RNA–Protein interactions for RNA: ENST00000395354.1

LMNB1-202, Transcript of lamin B1, humanhuman

TSL 1 (best) BASIC

Gene LMNB1, Length 1,572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-202ENST00000395354 CEP170Q5SW79 1584 aa30.83■■■□□ 2.53
LMNB1-202ENST00000395354 KIAA0586Q9BVV6 1533 aa30.75■■■□□ 2.51
LMNB1-202ENST00000395354 TNIKQ9UKE5 1360 aa30.74■■■□□ 2.51
LMNB1-202ENST00000395354 CLASP1Q7Z460 1538 aa30.69■■■□□ 2.5
LMNB1-202ENST00000395354 CTTNBP2Q8WZ74 1663 aa30.68■■■□□ 2.5
LMNB1-202ENST00000395354 JPH4Q96JJ6 628 aa30.65■■■□□ 2.5
LMNB1-202ENST00000395354 IQGAP2Q13576 1575 aa30.64■■■□□ 2.49
LMNB1-202ENST00000395354 RANGAP1P46060 587 aaPredicted RBP30.58■■■□□ 2.49
LMNB1-202ENST00000395354 CEP162Q5TB80 1403 aa30.53■■■□□ 2.48
LMNB1-202ENST00000395354 SHROOM2Q13796 1616 aa30.52■■■□□ 2.48
LMNB1-202ENST00000395354 UGGT2Q9NYU1 1516 aa30.5■■■□□ 2.47
LMNB1-202ENST00000395354 PRG4Q92954 1404 aaPredicted RBP30.49■■■□□ 2.47
LMNB1-202ENST00000395354 CARMIL2Q6F5E8 1435 aa30.41■■■□□ 2.46
LMNB1-202ENST00000395354 DISP1Q96F81 1524 aa30.4■■■□□ 2.46
LMNB1-202ENST00000395354 P3H3Q8IVL6 736 aa30.39■■■□□ 2.46
LMNB1-202ENST00000395354 DNAJC5Q9H3Z4 198 aa30.39■■■□□ 2.46
LMNB1-202ENST00000395354 ERCC6L2Q5T890 1561 aa30.38■■■□□ 2.45
LMNB1-202ENST00000395354 CLIP1P30622 1438 aa30.36■■■□□ 2.45
LMNB1-202ENST00000395354 ARHGEF11O15085 1522 aa30.34■■■□□ 2.45
LMNB1-202ENST00000395354 SAMD9Q5K651 1589 aa30.34■■■□□ 2.45
LMNB1-202ENST00000395354 KIAA0556O60303 1618 aa30.33■■■□□ 2.45
LMNB1-202ENST00000395354 EFCAB5A4FU69 1503 aa30.32■■■□□ 2.44
LMNB1-202ENST00000395354 ARHGAP35Q9NRY4 1499 aa30.31■■■□□ 2.44
LMNB1-202ENST00000395354 TTBK1Q5TCY1 1321 aaPredicted RBP30.27■■■□□ 2.44
LMNB1-202ENST00000395354 RIMBP3CA6NJZ7 1639 aa30.27■■■□□ 2.44
LMNB1-202ENST00000395354 RIMBP3BA6NNM3 1639 aa30.27■■■□□ 2.44
LMNB1-202ENST00000395354 RIMBP3Q9UFD9 1639 aa30.27■■■□□ 2.44
LMNB1-202ENST00000395354 FHOD3Q2V2M9 1422 aa30.24■■■□□ 2.43
LMNB1-202ENST00000395354 PTPRGP23470 1445 aa30.23■■■□□ 2.43
LMNB1-202ENST00000395354 ARAP1Q96P48 1450 aa30.18■■■□□ 2.42
LMNB1-202ENST00000395354 TRIM26Q12899 539 aaPredicted RBP30.16■■■□□ 2.42
LMNB1-202ENST00000395354 CYB5RLQ6IPT4 315 aa30.14■■■□□ 2.42
LMNB1-202ENST00000395354 PCGF6Q9BYE7 350 aa30.09■■■□□ 2.41
LMNB1-202ENST00000395354 FMN1Q68DA7 1419 aa30.08■■■□□ 2.41
LMNB1-202ENST00000395354 VPS8Q8N3P4 1428 aa30.05■■■□□ 2.4
LMNB1-202ENST00000395354 PLB1Q6P1J6 1458 aa30.02■■■□□ 2.4
LMNB1-202ENST00000395354 UACAQ9BZF9 1416 aa30.02■■■□□ 2.4
LMNB1-202ENST00000395354 ABCA8O94911 1581 aa29.97■■■□□ 2.39
LMNB1-202ENST00000395354 ATP1B4Q9UN42 357 aaPredicted RBP29.96■■■□□ 2.39
LMNB1-202ENST00000395354 RAPGEF6Q8TEU7 1601 aa29.94■■■□□ 2.38
LMNB1-202ENST00000395354 UHRF1BP1LA0JNW5 1464 aa29.91■■■□□ 2.38
LMNB1-202ENST00000395354 CASKIN1Q8WXD9 1431 aa29.91■■■□□ 2.38
LMNB1-202ENST00000395354 ABCC2Q92887 1545 aa29.91■■■□□ 2.38
LMNB1-202ENST00000395354 ADCY10Q96PN6 1610 aa29.88■■■□□ 2.37
LMNB1-202ENST00000395354 PCF11O94913 1555 aaKnown RBP29.87■■■□□ 2.37
LMNB1-202ENST00000395354 ARID3CA6NKF2 412 aa29.86■■■□□ 2.37
LMNB1-202ENST00000395354 NUP153P49790 1475 aaKnown RBP29.85■■■□□ 2.37
LMNB1-202ENST00000395354 FYCO1Q9BQS8 1478 aa29.84■■■□□ 2.37
LMNB1-202ENST00000395354 NPM1P06748 294 aaKnown RBP eCLIP29.83■■■□□ 2.37
LMNB1-202ENST00000395354 HECW1Q76N89 1606 aa29.82■■■□□ 2.36
LMNB1-202ENST00000395354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.79■■■□□ 2.36
LMNB1-202ENST00000395354 HNRNPUL2Q1KMD3 747 aaKnown RBP29.79■■■□□ 2.36
LMNB1-202ENST00000395354 ATP10BO94823 1461 aa29.78■■■□□ 2.36
LMNB1-202ENST00000395354 KDM5BQ9UGL1 1544 aa29.78■■■□□ 2.36
LMNB1-202ENST00000395354 PPARGC1BQ86YN6 1023 aaKnown RBP29.77■■■□□ 2.36
LMNB1-202ENST00000395354 EPRSP07814 1512 aaKnown RBP29.76■■■□□ 2.35
LMNB1-202ENST00000395354 APLP2Q06481 763 aa29.74■■■□□ 2.35
LMNB1-202ENST00000395354 LRRIQ1Q96JM4 1722 aa29.71■■■□□ 2.35
LMNB1-202ENST00000395354 ZCCHC11Q5TAX3 1644 aaKnown RBP29.71■■■□□ 2.35
LMNB1-202ENST00000395354 CDK13Q14004 1512 aaKnown RBP29.71■■■□□ 2.35
LMNB1-202ENST00000395354 CCDC18Q5T9S5 1454 aa29.7■■■□□ 2.35
LMNB1-202ENST00000395354 CDK11AQ9UQ88 783 aaPredicted RBP29.65■■■□□ 2.34
LMNB1-202ENST00000395354 PLEKHD1A6NEE1 506 aa29.64■■■□□ 2.33
LMNB1-202ENST00000395354 ASXL2Q76L83 1435 aa29.59■■■□□ 2.33
LMNB1-202ENST00000395354 MAP3K1Q13233 1512 aa29.58■■■□□ 2.33
LMNB1-202ENST00000395354 TIAM1Q13009 1591 aa29.58■■■□□ 2.33
LMNB1-202ENST00000395354 MAPKBP1O60336 1514 aa29.57■■■□□ 2.32
LMNB1-202ENST00000395354 CFAP43Q8NDM7 1665 aa29.54■■■□□ 2.32
LMNB1-202ENST00000395354 KCNH8Q96L42 1107 aa29.53■■■□□ 2.32
LMNB1-202ENST00000395354 KANK4Q5T7N3 995 aaPredicted RBP29.52■■■□□ 2.32
LMNB1-202ENST00000395354 WDR7Q9Y4E6 1490 aa29.52■■■□□ 2.32
LMNB1-202ENST00000395354 MTUS2Q5JR59 1369 aa29.52■■■□□ 2.32
LMNB1-202ENST00000395354 MAGI3Q5TCQ9 1506 aa29.5■■■□□ 2.31
LMNB1-202ENST00000395354 TROQ12816 1431 aaPredicted RBP29.49■■■□□ 2.31
LMNB1-202ENST00000395354 LRRC9Q6ZRR7 1453 aa29.47■■■□□ 2.31
LMNB1-202ENST00000395354 HRCP23327 699 aa29.45■■■□□ 2.31
LMNB1-202ENST00000395354 EHBP1L1Q8N3D4 1523 aa29.41■■■□□ 2.3
LMNB1-202ENST00000395354 ABCC10Q5T3U5 1492 aa29.38■■■□□ 2.29
LMNB1-202ENST00000395354 FAM69CQ0P6D2 419 aa29.37■■■□□ 2.29
LMNB1-202ENST00000395354 KIF14Q15058 1648 aa29.34■■■□□ 2.29
LMNB1-202ENST00000395354 DIP2BQ9P265 1576 aa29.32■■■□□ 2.28
LMNB1-202ENST00000395354 TRHP20396 242 aaPredicted RBP29.31■■■□□ 2.28
LMNB1-202ENST00000395354 SUPT6HQ7KZ85 1726 aaKnown RBP29.3■■■□□ 2.28
LMNB1-202ENST00000395354 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.29■■■□□ 2.281e-6■□□□□ 10.8
LMNB1-202ENST00000395354 GLI2P10070 1586 aa29.29■■■□□ 2.28
LMNB1-202ENST00000395354 NCOA2Q15596 1464 aa29.28■■■□□ 2.28
LMNB1-202ENST00000395354 ABCA9Q8IUA7 1624 aa29.26■■■□□ 2.27
LMNB1-202ENST00000395354 KIF13AQ9H1H9 1805 aa29.25■■■□□ 2.27
LMNB1-202ENST00000395354 TTC37Q6PGP7 1564 aa29.24■■■□□ 2.27
LMNB1-202ENST00000395354 CCNB3Q8WWL7 1395 aa29.23■■■□□ 2.27
LMNB1-202ENST00000395354 CD109Q6YHK3 1445 aa29.22■■■□□ 2.27
LMNB1-202ENST00000395354 RRBP1Q9P2E9 1410 aaKnown RBP29.2■■■□□ 2.26
LMNB1-202ENST00000395354 MAP3K4Q9Y6R4 1608 aa29.17■■■□□ 2.26
LMNB1-202ENST00000395354 GPATCH8Q9UKJ3 1502 aaKnown RBP29.17■■■□□ 2.26
LMNB1-202ENST00000395354 PHLDB1Q86UU1 1377 aa29.16■■■□□ 2.26
LMNB1-202ENST00000395354 PLCH2O75038 1416 aa29.16■■■□□ 2.26
LMNB1-202ENST00000395354 CFDP1Q9UEE9 299 aaPredicted RBP29.13■■■□□ 2.25
LMNB1-202ENST00000395354 MYO5CQ9NQX4 1742 aa29.13■■■□□ 2.25
LMNB1-202ENST00000395354 CDC42BPAQ5VT25 1732 aa29.13■■■□□ 2.25
LMNB1-202ENST00000395354 ZEB1P37275 1124 aaPredicted RBP29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms