RNA–Protein interactions for RNA: ENST00000394114.2

CASC3-202, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 2

Gene CASC3, Length 2,792 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-202ENST00000394114 RUSC2Q8N2Y8 1516 aa9.43□□□□□ -0.9
CASC3-202ENST00000394114 NPM1P06748 294 aaKnown RBP eCLIP9.43□□□□□ -0.9
CASC3-202ENST00000394114 PRDM2Q13029 1718 aa9.42□□□□□ -0.9
CASC3-202ENST00000394114 PROM2Q8N271 834 aa9.42□□□□□ -0.9
CASC3-202ENST00000394114 TOP2BQ02880 1626 aa9.4□□□□□ -0.9
CASC3-202ENST00000394114 CUX1P39880 1505 aa9.4□□□□□ -0.91
CASC3-202ENST00000394114 TSHZ2Q9NRE2 1034 aa9.4□□□□□ -0.91
CASC3-202ENST00000394114 NBR1Q14596 966 aa9.38□□□□□ -0.91
CASC3-202ENST00000394114 BIVM-ERCC5R4GMW8 1640 aa9.38□□□□□ -0.91
CASC3-202ENST00000394114 SPDYE4A6NLX3 237 aa9.37□□□□□ -0.91
CASC3-202ENST00000394114 FANCD2Q9BXW9 1451 aa9.37□□□□□ -0.91
CASC3-202ENST00000394114 DMRT2Q9Y5R5 561 aa9.36□□□□□ -0.91
CASC3-202ENST00000394114 SPRYD3Q8NCJ5 442 aa9.35□□□□□ -0.91
CASC3-202ENST00000394114 LAMC3Q9Y6N6 1575 aa9.34□□□□□ -0.91
CASC3-202ENST00000394114 EEA1Q15075 1411 aa9.32□□□□□ -0.92
CASC3-202ENST00000394114 C14orf37Q86TY3 774 aa9.32□□□□□ -0.92
CASC3-202ENST00000394114 UBTFP17480 764 aaKnown RBP9.3□□□□□ -0.92
CASC3-202ENST00000394114 CEP164Q9UPV0 1460 aa9.3□□□□□ -0.92
CASC3-202ENST00000394114 KIF21AQ7Z4S6 1674 aa9.3□□□□□ -0.92
CASC3-202ENST00000394114 FGD5Q6ZNL6 1462 aa9.3□□□□□ -0.92
CASC3-202ENST00000394114 PDS5BQ9NTI5 1447 aa9.28□□□□□ -0.92
CASC3-202ENST00000394114 ECM2O94769 699 aaPredicted RBP9.27□□□□□ -0.93
CASC3-202ENST00000394114 TOPBP1Q92547 1522 aa9.27□□□□□ -0.93
CASC3-202ENST00000394114 DNMBPQ6XZF7 1577 aa9.27□□□□□ -0.93
CASC3-202ENST00000394114 SAMD1Q6SPF0 538 aaPredicted RBP9.26□□□□□ -0.93
CASC3-202ENST00000394114 CUX2O14529 1486 aa9.26□□□□□ -0.93
CASC3-202ENST00000394114 GOLGA3Q08378 1498 aa9.26□□□□□ -0.93
CASC3-202ENST00000394114 URB2Q14146 1524 aaKnown RBP9.26□□□□□ -0.93
CASC3-202ENST00000394114 RAD54L2Q9Y4B4 1467 aa9.25□□□□□ -0.93
CASC3-202ENST00000394114 KIF27Q86VH2 1401 aa9.25□□□□□ -0.93
CASC3-202ENST00000394114 RANGAP1P46060 587 aaPredicted RBP9.25□□□□□ -0.93
CASC3-202ENST00000394114 RAPGEF2Q9Y4G8 1499 aa9.25□□□□□ -0.93
CASC3-202ENST00000394114 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.24□□□□□ -0.93
CASC3-202ENST00000394114 HNRNPUL2Q1KMD3 747 aaKnown RBP9.24□□□□□ -0.93
CASC3-202ENST00000394114 POLA1P09884 1462 aaPredicted RBP9.24□□□□□ -0.93
CASC3-202ENST00000394114 KIF21BO75037 1637 aa9.23□□□□□ -0.93
CASC3-202ENST00000394114 CEP162Q5TB80 1403 aa9.22□□□□□ -0.93
CASC3-202ENST00000394114 TNIKQ9UKE5 1360 aa9.22□□□□□ -0.93
CASC3-202ENST00000394114 PPARGC1BQ86YN6 1023 aaKnown RBP9.21□□□□□ -0.94
CASC3-202ENST00000394114 POTEDQ86YR6 584 aa9.2□□□□□ -0.94
CASC3-202ENST00000394114 RGL2O15211 777 aa9.19□□□□□ -0.94
CASC3-202ENST00000394114 PCGF6Q9BYE7 350 aa9.19□□□□□ -0.94
CASC3-202ENST00000394114 ZNF219Q9P2Y4 722 aaPredicted RBP9.19□□□□□ -0.94
CASC3-202ENST00000394114 ERCC6Q03468 1493 aa9.18□□□□□ -0.94
CASC3-202ENST00000394114 PRXQ9BXM0 1461 aa9.18□□□□□ -0.94
CASC3-202ENST00000394114 SPOCK2Q92563 424 aa9.18□□□□□ -0.94
CASC3-202ENST00000394114 IGF1RP08069 1367 aa9.17□□□□□ -0.94
CASC3-202ENST00000394114 TDRD9Q8NDG6 1382 aaKnown RBP9.17□□□□□ -0.94
CASC3-202ENST00000394114 PODXL2Q9NZ53 605 aa9.17□□□□□ -0.94
CASC3-202ENST00000394114 MRC2Q9UBG0 1479 aa9.17□□□□□ -0.94
CASC3-202ENST00000394114 ABCA10Q8WWZ4 1543 aa9.16□□□□□ -0.94
CASC3-202ENST00000394114 MKRN4PQ13434 485 aaPredicted RBP9.15□□□□□ -0.94
CASC3-202ENST00000394114 TTBK1Q5TCY1 1321 aaPredicted RBP9.15□□□□□ -0.94
CASC3-202ENST00000394114 ERICH3Q5RHP9 1530 aa9.15□□□□□ -0.95
CASC3-202ENST00000394114 CLIP1P30622 1438 aa9.14□□□□□ -0.95
CASC3-202ENST00000394114 WDR97A6NE52 1622 aa9.14□□□□□ -0.95
CASC3-202ENST00000394114 CARMIL1Q5VZK9 1371 aa9.14□□□□□ -0.95
CASC3-202ENST00000394114 TARBP1Q13395 1621 aaKnown RBP9.12□□□□□ -0.95
CASC3-202ENST00000394114 GAPVD1Q14C86 1478 aa9.11□□□□□ -0.95
CASC3-202ENST00000394114 WDR62O43379 1518 aa9.1□□□□□ -0.95
CASC3-202ENST00000394114 ABCA5Q8WWZ7 1642 aa9.1□□□□□ -0.95
CASC3-202ENST00000394114 AQRO60306 1485 aaKnown RBP eCLIP9.09□□□□□ -0.953e-7■■■■□ 22.1
CASC3-202ENST00000394114 TRIM26Q12899 539 aaPredicted RBP9.09□□□□□ -0.95
CASC3-202ENST00000394114 CHGAP10645 457 aaKnown RBP9.08□□□□□ -0.96
CASC3-202ENST00000394114 THOC2Q8NI27 1593 aaKnown RBP9.08□□□□□ -0.96
CASC3-202ENST00000394114 KLHL34Q8N239 644 aa9.08□□□□□ -0.96
CASC3-202ENST00000394114 ZNF608Q9ULD9 1512 aaPredicted RBP9.08□□□□□ -0.96
CASC3-202ENST00000394114 U3KPZ7 1027 aaPredicted RBP9.07□□□□□ -0.96
CASC3-202ENST00000394114 CUL7Q14999 1698 aa9.06□□□□□ -0.96
CASC3-202ENST00000394114 PELP1Q8IZL8 1130 aaKnown RBP9.06□□□□□ -0.96
CASC3-202ENST00000394114 MYT1Q01538 1121 aa9.05□□□□□ -0.96
CASC3-202ENST00000394114 PBRM1Q86U86 1689 aa9.05□□□□□ -0.96
CASC3-202ENST00000394114 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.05□□□□□ -0.96
CASC3-202ENST00000394114 IFT140Q96RY7 1462 aa9.04□□□□□ -0.96
CASC3-202ENST00000394114 VPS8Q8N3P4 1428 aa9.04□□□□□ -0.96
CASC3-202ENST00000394114 P3H3Q8IVL6 736 aa9.04□□□□□ -0.96
CASC3-202ENST00000394114 ARAP1Q96P48 1450 aa9.04□□□□□ -0.96
CASC3-202ENST00000394114 ARHGAP35Q9NRY4 1499 aa9.03□□□□□ -0.96
CASC3-202ENST00000394114 EIF4G3O43432 1585 aaKnown RBP9.01□□□□□ -0.97
CASC3-202ENST00000394114 GRIN2BQ13224 1484 aa9□□□□□ -0.97
CASC3-202ENST00000394114 CTTNBP2Q8WZ74 1663 aa9□□□□□ -0.97
CASC3-202ENST00000394114 APLP2Q06481 763 aa9□□□□□ -0.97
CASC3-202ENST00000394114 ADAMTS12P58397 1594 aa8.99□□□□□ -0.97
CASC3-202ENST00000394114 SNAPC4Q5SXM2 1469 aa8.98□□□□□ -0.97
CASC3-202ENST00000394114 HS6ST3Q8IZP7 471 aa8.98□□□□□ -0.97
CASC3-202ENST00000394114 FHAD1B1AJZ9 1412 aa8.97□□□□□ -0.97
CASC3-202ENST00000394114 FHOD3Q2V2M9 1422 aa8.97□□□□□ -0.97
CASC3-202ENST00000394114 ATP1B4Q9UN42 357 aaPredicted RBP8.96□□□□□ -0.97
CASC3-202ENST00000394114 BRPF1P55201 1214 aaPredicted RBP8.94□□□□□ -0.98
CASC3-202ENST00000394114 KANK4Q5T7N3 995 aaPredicted RBP8.94□□□□□ -0.98
CASC3-202ENST00000394114 CHMP7Q8WUX9 453 aaPredicted RBP8.93□□□□□ -0.98
CASC3-202ENST00000394114 NPM2Q86SE8 214 aaKnown RBP8.92□□□□□ -0.98
CASC3-202ENST00000394114 GRIN2AQ12879 1464 aa8.91□□□□□ -0.98
CASC3-202ENST00000394114 EFCAB5A4FU69 1503 aa8.91□□□□□ -0.98
CASC3-202ENST00000394114 PCF11O94913 1555 aaKnown RBP8.9□□□□□ -0.98
CASC3-202ENST00000394114 IQGAP2Q13576 1575 aa8.9□□□□□ -0.98
CASC3-202ENST00000394114 MAGI1Q96QZ7 1491 aaPredicted RBP8.9□□□□□ -0.98
CASC3-202ENST00000394114 SYNJ2O15056 1496 aa8.89□□□□□ -0.99
CASC3-202ENST00000394114 SAMD9Q5K651 1589 aa8.89□□□□□ -0.99
CASC3-202ENST00000394114 HRCP23327 699 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms