RNA–Protein interactions for RNA: ENST00000394114.2

CASC3-202, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 2

Gene CASC3, Length 2,792 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-202ENST00000394114 CHIC1Q5VXU3 224 aa14.4□□□□□ -0.1
CASC3-202ENST00000394114 AEBP2Q6ZN18 517 aaPredicted RBP13.81□□□□□ -0.2
CASC3-202ENST00000394114 NISCHQ9Y2I1 1504 aa12.96□□□□□ -0.33
CASC3-202ENST00000394114 PHF23Q9BUL5 403 aaPredicted RBP12.81□□□□□ -0.36
CASC3-202ENST00000394114 PLPPR3Q6T4P5 718 aa12.11□□□□□ -0.47
CASC3-202ENST00000394114 EHMT2Q96KQ7 1210 aa12.07□□□□□ -0.48
CASC3-202ENST00000394114 SLC24A1O60721 1099 aa11.7□□□□□ -0.54
CASC3-202ENST00000394114 KCNA4P22459 653 aa11.68□□□□□ -0.54
CASC3-202ENST00000394114 CSRNP3Q8WYN3 585 aa11.52□□□□□ -0.56
CASC3-202ENST00000394114 SENP3Q9H4L4 574 aaPredicted RBP11.5□□□□□ -0.57
CASC3-202ENST00000394114 ADRA2BP18089 450 aa11.34□□□□□ -0.59
CASC3-202ENST00000394114 SLC4A1APQ9BWU0 796 aaKnown RBP11.26□□□□□ -0.61
CASC3-202ENST00000394114 CCDC180Q9P1Z9 1646 aa11.23□□□□□ -0.61
CASC3-202ENST00000394114 RTN4Q9NQC3 1192 aaKnown RBP11.16□□□□□ -0.62
CASC3-202ENST00000394114 AMER1Q5JTC6 1135 aaPredicted RBP11.12□□□□□ -0.63
CASC3-202ENST00000394114 PPP6R1Q9UPN7 881 aa10.98□□□□□ -0.65
CASC3-202ENST00000394114 DCAF8L2P0C7V8 631 aa10.89□□□□□ -0.67
CASC3-202ENST00000394114 ZCCHC6Q5VYS8 1495 aaKnown RBP10.89□□□□□ -0.67
CASC3-202ENST00000394114 ZBTB22O15209 634 aa10.81□□□□□ -0.68
CASC3-202ENST00000394114 PPP4R3CPQ6ZMV5 832 aa10.79□□□□□ -0.68
CASC3-202ENST00000394114 SHROOM4Q9ULL8 1493 aa10.79□□□□□ -0.68
CASC3-202ENST00000394114 NCBP3Q53F19 620 aaKnown RBP10.75□□□□□ -0.69
CASC3-202ENST00000394114 ABCC9O60706 1549 aa10.74□□□□□ -0.69
CASC3-202ENST00000394114 FOXD1Q16676 465 aa10.68□□□□□ -0.7
CASC3-202ENST00000394114 NPM3O75607 178 aaKnown RBP10.66□□□□□ -0.7
CASC3-202ENST00000394114 DCAF1Q9Y4B6 1507 aa10.63□□□□□ -0.71
CASC3-202ENST00000394114 SCRIBQ14160 1630 aa10.47□□□□□ -0.73
CASC3-202ENST00000394114 MYO15BQ96JP2 1530 aa10.46□□□□□ -0.73
CASC3-202ENST00000394114 NACADO15069 1562 aa10.46□□□□□ -0.74
CASC3-202ENST00000394114 FOXD4L1Q9NU39 408 aa10.44□□□□□ -0.74
CASC3-202ENST00000394114 SUPT5HO00267 1087 aaKnown RBP10.39□□□□□ -0.75
CASC3-202ENST00000394114 RB1CC1Q8TDY2 1594 aa10.39□□□□□ -0.75
CASC3-202ENST00000394114 FKBP8Q14318 412 aa10.31□□□□□ -0.76
CASC3-202ENST00000394114 CNKSR2Q8WXI2 1034 aa10.27□□□□□ -0.76
CASC3-202ENST00000394114 DNAJC5BQ9UF47 199 aa10.26□□□□□ -0.77
CASC3-202ENST00000394114 UNC13AQ9UPW8 1703 aa10.24□□□□□ -0.77
CASC3-202ENST00000394114 PRKCSHP14314 528 aaPredicted RBP10.22□□□□□ -0.77
CASC3-202ENST00000394114 PLCB2Q00722 1185 aa10.21□□□□□ -0.77
CASC3-202ENST00000394114 PABPN1Q86U42 306 aaKnown RBP eCLIP10.19□□□□□ -0.785e-6■■■■□ 22.2
CASC3-202ENST00000394114 PIAS4Q8N2W9 510 aaPredicted RBP10.19□□□□□ -0.78
CASC3-202ENST00000394114 BCANQ96GW7 911 aa10.16□□□□□ -0.78
CASC3-202ENST00000394114 CECR2Q9BXF3 1484 aa10.14□□□□□ -0.79
CASC3-202ENST00000394114 TAOK2Q9UL54 1235 aa10.14□□□□□ -0.79
CASC3-202ENST00000394114 BICRAQ9NZM4 1560 aa10.11□□□□□ -0.79
CASC3-202ENST00000394114 RSF1Q96T23 1441 aaPredicted RBP10.1□□□□□ -0.79
CASC3-202ENST00000394114 MROH2BQ7Z745 1585 aa10.06□□□□□ -0.8
CASC3-202ENST00000394114 HAP1P54257 671 aaPredicted RBP10.02□□□□□ -0.81
CASC3-202ENST00000394114 DAXXQ9UER7 740 aaPredicted RBP10.01□□□□□ -0.81
CASC3-202ENST00000394114 WIZO95785 1651 aa10.01□□□□□ -0.81
CASC3-202ENST00000394114 ATXN8OSP0DMR3 200 aa10□□□□□ -0.81
CASC3-202ENST00000394114 BAZ1AQ9NRL2 1556 aaPredicted RBP9.99□□□□□ -0.81
CASC3-202ENST00000394114 SCAF1Q9H7N4 1312 aaKnown RBP9.99□□□□□ -0.81
CASC3-202ENST00000394114 SMARCA4P51532 1647 aa9.97□□□□□ -0.81
CASC3-202ENST00000394114 VSIG10Q8N0Z9 540 aa9.93□□□□□ -0.82
CASC3-202ENST00000394114 TPRNQ4KMQ1 711 aa9.93□□□□□ -0.82
CASC3-202ENST00000394114 SLC4A2P04920 1241 aa9.85□□□□□ -0.83
CASC3-202ENST00000394114 RNF216Q9NWF9 866 aaPredicted RBP9.85□□□□□ -0.83
CASC3-202ENST00000394114 ARXQ96QS3 562 aa9.84□□□□□ -0.83
CASC3-202ENST00000394114 TIMELESSQ9UNS1 1208 aa9.84□□□□□ -0.83
CASC3-202ENST00000394114 TOP2AP11388 1531 aaKnown RBP9.83□□□□□ -0.84
CASC3-202ENST00000394114 EIF4G1Q04637 1599 aaKnown RBP9.8□□□□□ -0.84
CASC3-202ENST00000394114 MYCNP04198 464 aaPredicted RBP9.8□□□□□ -0.84
CASC3-202ENST00000394114 ATAD2BQ9ULI0 1458 aa9.79□□□□□ -0.84
CASC3-202ENST00000394114 PEG3Q9GZU2 1588 aa9.78□□□□□ -0.84
CASC3-202ENST00000394114 CCDC88BA6NC98 1476 aa9.77□□□□□ -0.85
CASC3-202ENST00000394114 SMARCA2P51531 1590 aa9.77□□□□□ -0.85
CASC3-202ENST00000394114 BAZ1BQ9UIG0 1483 aaKnown RBP9.76□□□□□ -0.85
CASC3-202ENST00000394114 TULP1O00294 542 aaPredicted RBP9.74□□□□□ -0.85
CASC3-202ENST00000394114 KDM2AQ9Y2K7 1162 aa9.74□□□□□ -0.85
CASC3-202ENST00000394114 MSH5O43196 834 aa9.71□□□□□ -0.86
CASC3-202ENST00000394114 TRIM41Q8WV44 630 aa9.7□□□□□ -0.86
CASC3-202ENST00000394114 MAPK8IP2Q13387 824 aaPredicted RBP9.69□□□□□ -0.86
CASC3-202ENST00000394114 CC2D2AQ9P2K1 1620 aa9.66□□□□□ -0.86
CASC3-202ENST00000394114 NCAPD3P42695 1498 aa9.66□□□□□ -0.86
CASC3-202ENST00000394114 FBXO3Q9UK99 471 aa9.66□□□□□ -0.86
CASC3-202ENST00000394114 HMGXB3Q12766 1538 aa9.65□□□□□ -0.87
CASC3-202ENST00000394114 ABCC8Q09428 1581 aa9.64□□□□□ -0.87
CASC3-202ENST00000394114 FBLN2P98095 1184 aa9.64□□□□□ -0.87
CASC3-202ENST00000394114 DNAJC5Q9H3Z4 198 aa9.64□□□□□ -0.87
CASC3-202ENST00000394114 FAM9AQ8IZU1 332 aaPredicted RBP9.63□□□□□ -0.87
CASC3-202ENST00000394114 GTF3C3Q9Y5Q9 886 aa9.63□□□□□ -0.87
CASC3-202ENST00000394114 ERICH6Q7L0X2 663 aa9.6□□□□□ -0.87
CASC3-202ENST00000394114 LOC105371045A0A1W2PR82 267 aa9.58□□□□□ -0.88
CASC3-202ENST00000394114 PKD2Q13563 968 aa9.57□□□□□ -0.88
CASC3-202ENST00000394114 HOXD11P31277 338 aaPredicted RBP9.56□□□□□ -0.88
CASC3-202ENST00000394114 HOMEZQ8IX15 550 aa9.55□□□□□ -0.88
CASC3-202ENST00000394114 BBXQ8WY36 941 aaPredicted RBP9.54□□□□□ -0.88
CASC3-202ENST00000394114 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.54□□□□□ -0.88
CASC3-202ENST00000394114 VASPP50552 380 aaPredicted RBP9.53□□□□□ -0.88
CASC3-202ENST00000394114 ATF5Q9Y2D1 282 aaPredicted RBP9.52□□□□□ -0.89
CASC3-202ENST00000394114 WRNQ14191 1432 aaPredicted RBP eCLIP9.51□□□□□ -0.89
CASC3-202ENST00000394114 IFNLR1Q8IU57 520 aaPredicted RBP9.5□□□□□ -0.89
CASC3-202ENST00000394114 PAXIP1Q6ZW49 1069 aaPredicted RBP9.49□□□□□ -0.89
CASC3-202ENST00000394114 SYNJ1O43426 1573 aa9.49□□□□□ -0.89
CASC3-202ENST00000394114 CFTRP13569 1480 aa9.48□□□□□ -0.89
CASC3-202ENST00000394114 SOGA1O94964 1423 aa9.46□□□□□ -0.9
CASC3-202ENST00000394114 CADPSQ9ULU8 1353 aa9.45□□□□□ -0.9
CASC3-202ENST00000394114 CFAP44Q96MT7 982 aa9.45□□□□□ -0.9
CASC3-202ENST00000394114 NESP48681 1621 aa9.45□□□□□ -0.9
CASC3-202ENST00000394114 TMEM132AQ24JP5 1023 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms