RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 STAG3Q9UJ98 1225 aa26.41■■□□□ 1.82
SHANK1-203ENST00000391813 SUPT16HQ9Y5B9 1047 aaKnown RBP26.39■■□□□ 1.81
SHANK1-203ENST00000391813 MRS2Q9HD23 443 aa26.36■■□□□ 1.81
SHANK1-203ENST00000391813 CEP164Q9UPV0 1460 aa26.34■■□□□ 1.81
SHANK1-203ENST00000391813 DDRGK1Q96HY6 314 aa26.33■■□□□ 1.81
SHANK1-203ENST00000391813 CADPSQ9ULU8 1353 aa26.31■■□□□ 1.8
SHANK1-203ENST00000391813 HSP90AA1P07900 732 aaKnown RBP26.31■■□□□ 1.8
SHANK1-203ENST00000391813 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.3■■□□□ 1.8
SHANK1-203ENST00000391813 TMC1Q8TDI8 760 aa26.3■■□□□ 1.8
SHANK1-203ENST00000391813 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
SHANK1-203ENST00000391813 IRX6P78412 446 aaPredicted RBP26.3■■□□□ 1.8
SHANK1-203ENST00000391813 KCNH8Q96L42 1107 aa26.29■■□□□ 1.8
SHANK1-203ENST00000391813 CUX2O14529 1486 aa26.27■■□□□ 1.8
SHANK1-203ENST00000391813 CHGAP10645 457 aaKnown RBP26.26■■□□□ 1.79
SHANK1-203ENST00000391813 ATAD2BQ9ULI0 1458 aa26.25■■□□□ 1.79
SHANK1-203ENST00000391813 PPM1GO15355 546 aaPredicted RBP26.25■■□□□ 1.79
SHANK1-203ENST00000391813 CARMIL1Q5VZK9 1371 aa26.23■■□□□ 1.79
SHANK1-203ENST00000391813 NEFMP07197 916 aa26.23■■□□□ 1.79
SHANK1-203ENST00000391813 TOP2AP11388 1531 aaKnown RBP26.2■■□□□ 1.78
SHANK1-203ENST00000391813 ERICH6BQ5W0A0 696 aa26.19■■□□□ 1.78
SHANK1-203ENST00000391813 CHIC2Q9UKJ5 165 aa26.18■■□□□ 1.78
SHANK1-203ENST00000391813 TNIKQ9UKE5 1360 aa26.18■■□□□ 1.78
SHANK1-203ENST00000391813 PPP4R2Q9NY27 417 aa26.17■■□□□ 1.78
SHANK1-203ENST00000391813 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.16■■□□□ 1.78
SHANK1-203ENST00000391813 SOGA1O94964 1423 aa26.16■■□□□ 1.78
SHANK1-203ENST00000391813 NOP58Q9Y2X3 529 aaKnown RBP26.14■■□□□ 1.78
SHANK1-203ENST00000391813 CEP162Q5TB80 1403 aa26.12■■□□□ 1.77
SHANK1-203ENST00000391813 EIF4G2P78344 907 aaKnown RBP eCLIP26.11■■□□□ 1.77
SHANK1-203ENST00000391813 PLPPR3Q6T4P5 718 aa26.11■■□□□ 1.77
SHANK1-203ENST00000391813 BECN1Q14457 450 aa26.09■■□□□ 1.77
SHANK1-203ENST00000391813 CFDP1Q9UEE9 299 aaPredicted RBP26.09■■□□□ 1.77
SHANK1-203ENST00000391813 SMARCA4P51532 1647 aa26.06■■□□□ 1.76
SHANK1-203ENST00000391813 SALL2Q9Y467 1007 aaPredicted RBP26.06■■□□□ 1.76
SHANK1-203ENST00000391813 RBM19Q9Y4C8 960 aaKnown RBP26.05■■□□□ 1.76
SHANK1-203ENST00000391813 FHAD1B1AJZ9 1412 aa26.05■■□□□ 1.76
SHANK1-203ENST00000391813 CARMIL2Q6F5E8 1435 aa26.04■■□□□ 1.76
SHANK1-203ENST00000391813 TRIM44Q96DX7 344 aaPredicted RBP26.01■■□□□ 1.75
SHANK1-203ENST00000391813 ARXQ96QS3 562 aa26■■□□□ 1.75
SHANK1-203ENST00000391813 HIRIP3Q9BW71 556 aaPredicted RBP26■■□□□ 1.75
SHANK1-203ENST00000391813 DEKP35659 375 aaKnown RBP26■■□□□ 1.75
SHANK1-203ENST00000391813 TDRD9Q8NDG6 1382 aaKnown RBP26■■□□□ 1.75
SHANK1-203ENST00000391813 ABCC8Q09428 1581 aa25.97■■□□□ 1.75
SHANK1-203ENST00000391813 EIF4G1Q04637 1599 aaKnown RBP25.96■■□□□ 1.75
SHANK1-203ENST00000391813 WIZO95785 1651 aa25.95■■□□□ 1.74
SHANK1-203ENST00000391813 WDR43Q15061 677 aaKnown RBP eCLIP25.94■■□□□ 1.74
SHANK1-203ENST00000391813 ARID4BQ4LE39 1312 aaPredicted RBP25.93■■□□□ 1.74
SHANK1-203ENST00000391813 TSHZ2Q9NRE2 1034 aa25.9■■□□□ 1.74
SHANK1-203ENST00000391813 CCER2I3L3R5 266 aa25.89■■□□□ 1.74
SHANK1-203ENST00000391813 TRHP20396 242 aaPredicted RBP25.87■■□□□ 1.73
SHANK1-203ENST00000391813 RTN4Q9NQC3 1192 aaKnown RBP25.87■■□□□ 1.73
SHANK1-203ENST00000391813 NCAPD3P42695 1498 aa25.86■■□□□ 1.73
SHANK1-203ENST00000391813 RRP7BPQ9NSQ0 103 aa25.86■■□□□ 1.73
SHANK1-203ENST00000391813 FANCD2Q9BXW9 1451 aa25.86■■□□□ 1.73
SHANK1-203ENST00000391813 TNNT2P45379 298 aaPredicted RBP25.85■■□□□ 1.73
SHANK1-203ENST00000391813 CCNB3Q8WWL7 1395 aa25.84■■□□□ 1.73
SHANK1-203ENST00000391813 GOLGA6L22H0YM25 854 aa25.82■■□□□ 1.72
SHANK1-203ENST00000391813 TIMELESSQ9UNS1 1208 aa25.82■■□□□ 1.72
SHANK1-203ENST00000391813 PPP1R15AO75807 674 aaPredicted RBP25.82■■□□□ 1.72
SHANK1-203ENST00000391813 LAS1LQ9Y4W2 734 aaKnown RBP25.81■■□□□ 1.72
SHANK1-203ENST00000391813 NAP1L5Q96NT1 182 aaPredicted RBP25.76■■□□□ 1.71
SHANK1-203ENST00000391813 B4GALNT3Q6L9W6 998 aa25.75■■□□□ 1.71
SHANK1-203ENST00000391813 FMN1Q68DA7 1419 aa25.7■■□□□ 1.7
SHANK1-203ENST00000391813 SLC24A1O60721 1099 aa25.7■■□□□ 1.7
SHANK1-203ENST00000391813 KDM2AQ9Y2K7 1162 aa25.7■■□□□ 1.7
SHANK1-203ENST00000391813 RAPGEF2Q9Y4G8 1499 aa25.65■■□□□ 1.7
SHANK1-203ENST00000391813 JPH4Q96JJ6 628 aa25.64■■□□□ 1.69
SHANK1-203ENST00000391813 L1TD1Q5T7N2 865 aaKnown RBP25.63■■□□□ 1.69
SHANK1-203ENST00000391813 EFCAB2Q5VUJ9 269 aa25.61■■□□□ 1.69
SHANK1-203ENST00000391813 OSCARQ8IYS5 282 aa25.61■■□□□ 1.69
SHANK1-203ENST00000391813 NCLP19338 710 aaKnown RBP25.6■■□□□ 1.69
SHANK1-203ENST00000391813 MYH16Q9H6N6 1097 aa25.59■■□□□ 1.69
SHANK1-203ENST00000391813 KANK1Q14678 1352 aa25.58■■□□□ 1.69
SHANK1-203ENST00000391813 SIN3AQ96ST3 1273 aa25.56■■□□□ 1.68
SHANK1-203ENST00000391813 C14orf37Q86TY3 774 aa25.55■■□□□ 1.68
SHANK1-203ENST00000391813 VPS8Q8N3P4 1428 aa25.54■■□□□ 1.68
SHANK1-203ENST00000391813 PTMAP06454 111 aaKnown RBP25.52■■□□□ 1.68
SHANK1-203ENST00000391813 HDGFP51858 240 aaKnown RBP25.52■■□□□ 1.68
SHANK1-203ENST00000391813 RGL3Q3MIN7 710 aa25.49■■□□□ 1.67
SHANK1-203ENST00000391813 CDCA8Q53HL2 280 aa25.47■■□□□ 1.67
SHANK1-203ENST00000391813 RGS3P49796 1198 aa25.47■■□□□ 1.67
SHANK1-203ENST00000391813 DNTTIP2Q5QJE6 756 aaKnown RBP25.47■■□□□ 1.67
SHANK1-203ENST00000391813 TCERG1O14776 1098 aaKnown RBP25.45■■□□□ 1.66
SHANK1-203ENST00000391813 IPO9Q96P70 1041 aaKnown RBP25.45■■□□□ 1.66
SHANK1-203ENST00000391813 ARHGAP35Q9NRY4 1499 aa25.43■■□□□ 1.66
SHANK1-203ENST00000391813 RSPH4AQ5TD94 716 aa25.42■■□□□ 1.66
SHANK1-203ENST00000391813 GAPVD1Q14C86 1478 aa25.41■■□□□ 1.66
SHANK1-203ENST00000391813 USP35Q9P2H5 1018 aa25.39■■□□□ 1.66
SHANK1-203ENST00000391813 FGD5Q6ZNL6 1462 aa25.39■■□□□ 1.66
SHANK1-203ENST00000391813 PTPRGP23470 1445 aa25.39■■□□□ 1.65
SHANK1-203ENST00000391813 KNSTRNQ9Y448 316 aa25.37■■□□□ 1.65
SHANK1-203ENST00000391813 CARD11Q9BXL7 1154 aa25.36■■□□□ 1.65
SHANK1-203ENST00000391813 MLECQ14165 292 aa25.36■■□□□ 1.65
SHANK1-203ENST00000391813 HMGXB3Q12766 1538 aa25.35■■□□□ 1.65
SHANK1-203ENST00000391813 FANCIQ9NVI1 1328 aa25.35■■□□□ 1.65
SHANK1-203ENST00000391813 CC2D2AQ9P2K1 1620 aa25.35■■□□□ 1.65
SHANK1-203ENST00000391813 PNNQ9H307 717 aaKnown RBP25.35■■□□□ 1.65
SHANK1-203ENST00000391813 SENP3-EIF4A1A0A087X0R7 540 aa25.32■■□□□ 1.64
SHANK1-203ENST00000391813 CFTRP13569 1480 aa25.31■■□□□ 1.64
SHANK1-203ENST00000391813 GGT6Q6P531 493 aa25.31■■□□□ 1.64
SHANK1-203ENST00000391813 FTSJ3Q8IY81 847 aaKnown RBP25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms