RNA–Protein interactions for RNA: ENST00000378133.4

PCDHA1-201, Transcript of protocadherin alpha 1, humanhuman

BASIC

Gene PCDHA1, Length 2,726 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-201ENST00000378133 TOPBP1Q92547 1522 aa24.14■■□□□ 1.46
PCDHA1-201ENST00000378133 ITGAEP38570 1179 aa24.14■■□□□ 1.45
PCDHA1-201ENST00000378133 URB2Q14146 1524 aaKnown RBP24.13■■□□□ 1.45
PCDHA1-201ENST00000378133 CCNB3Q8WWL7 1395 aa24.13■■□□□ 1.45
PCDHA1-201ENST00000378133 SUPT16HQ9Y5B9 1047 aaKnown RBP24.08■■□□□ 1.45
PCDHA1-201ENST00000378133 CARMIL1Q5VZK9 1371 aa24.05■■□□□ 1.44
PCDHA1-201ENST00000378133 POLA1P09884 1462 aaPredicted RBP24.04■■□□□ 1.44
PCDHA1-201ENST00000378133 RAD54L2Q9Y4B4 1467 aa24■■□□□ 1.43
PCDHA1-201ENST00000378133 TIAM1Q13009 1591 aa23.95■■□□□ 1.42
PCDHA1-201ENST00000378133 RAB3GAP2Q9H2M9 1393 aa23.94■■□□□ 1.42
PCDHA1-201ENST00000378133 MRC2Q9UBG0 1479 aa23.94■■□□□ 1.42
PCDHA1-201ENST00000378133 P3H3Q8IVL6 736 aa23.93■■□□□ 1.42
PCDHA1-201ENST00000378133 ABCA10Q8WWZ4 1543 aa23.91■■□□□ 1.42
PCDHA1-201ENST00000378133 MAP3K1Q13233 1512 aa23.91■■□□□ 1.42
PCDHA1-201ENST00000378133 LRRC9Q6ZRR7 1453 aa23.89■■□□□ 1.42
PCDHA1-201ENST00000378133 TSHZ2Q9NRE2 1034 aa23.89■■□□□ 1.42
PCDHA1-201ENST00000378133 ATP1B4Q9UN42 357 aaPredicted RBP23.88■■□□□ 1.41
PCDHA1-201ENST00000378133 WDR97A6NE52 1622 aa23.87■■□□□ 1.41
PCDHA1-201ENST00000378133 PHLDB1Q86UU1 1377 aa23.87■■□□□ 1.41
PCDHA1-201ENST00000378133 PRKCSHP14314 528 aaPredicted RBP23.86■■□□□ 1.41
PCDHA1-201ENST00000378133 ERCC6Q03468 1493 aa23.86■■□□□ 1.41
PCDHA1-201ENST00000378133 FAM50AQ14320 339 aaKnown RBP23.85■■□□□ 1.41
PCDHA1-201ENST00000378133 FHAD1B1AJZ9 1412 aa23.83■■□□□ 1.41
PCDHA1-201ENST00000378133 SETD5Q9C0A6 1442 aa23.83■■□□□ 1.41
PCDHA1-201ENST00000378133 WDR62O43379 1518 aa23.82■■□□□ 1.4
PCDHA1-201ENST00000378133 ANP32EQ9BTT0 268 aa23.82■■□□□ 1.4
PCDHA1-201ENST00000378133 MAPKBP1O60336 1514 aa23.82■■□□□ 1.4
PCDHA1-201ENST00000378133 TARBP1Q13395 1621 aaKnown RBP23.8■■□□□ 1.4
PCDHA1-201ENST00000378133 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
PCDHA1-201ENST00000378133 PCF11O94913 1555 aaKnown RBP23.76■■□□□ 1.39
PCDHA1-201ENST00000378133 FHOD3Q2V2M9 1422 aa23.76■■□□□ 1.39
PCDHA1-201ENST00000378133 SIN3AQ96ST3 1273 aa23.75■■□□□ 1.39
PCDHA1-201ENST00000378133 ABCA5Q8WWZ7 1642 aa23.74■■□□□ 1.39
PCDHA1-201ENST00000378133 TDRD9Q8NDG6 1382 aaKnown RBP23.74■■□□□ 1.39
PCDHA1-201ENST00000378133 CFAP43Q8NDM7 1665 aa23.71■■□□□ 1.39
PCDHA1-201ENST00000378133 GAPVD1Q14C86 1478 aa23.67■■□□□ 1.38
PCDHA1-201ENST00000378133 KCNH8Q96L42 1107 aa23.64■■□□□ 1.37
PCDHA1-201ENST00000378133 FYCO1Q9BQS8 1478 aa23.64■■□□□ 1.37
PCDHA1-201ENST00000378133 CASKIN1Q8WXD9 1431 aa23.63■■□□□ 1.37
PCDHA1-201ENST00000378133 IFT140Q96RY7 1462 aa23.63■■□□□ 1.37
PCDHA1-201ENST00000378133 CUL7Q14999 1698 aa23.62■■□□□ 1.37
PCDHA1-201ENST00000378133 EFCAB5A4FU69 1503 aa23.61■■□□□ 1.37
PCDHA1-201ENST00000378133 AQRO60306 1485 aaKnown RBP eCLIP23.6■■□□□ 1.37
PCDHA1-201ENST00000378133 ZNF608Q9ULD9 1512 aaPredicted RBP23.59■■□□□ 1.37
PCDHA1-201ENST00000378133 DDX10Q13206 875 aaKnown RBP23.59■■□□□ 1.37
PCDHA1-201ENST00000378133 BCANQ96GW7 911 aa23.59■■□□□ 1.37
PCDHA1-201ENST00000378133 PBRM1Q86U86 1689 aa23.57■■□□□ 1.36
PCDHA1-201ENST00000378133 CTTNBP2Q8WZ74 1663 aa23.55■■□□□ 1.36
PCDHA1-201ENST00000378133 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.54■■□□□ 1.36
PCDHA1-201ENST00000378133 TIMELESSQ9UNS1 1208 aa23.54■■□□□ 1.36
PCDHA1-201ENST00000378133 FMN1Q68DA7 1419 aa23.54■■□□□ 1.36
PCDHA1-201ENST00000378133 FKBP8Q14318 412 aa23.53■■□□□ 1.36
PCDHA1-201ENST00000378133 HIRIP3Q9BW71 556 aaPredicted RBP23.52■■□□□ 1.36
PCDHA1-201ENST00000378133 PPP1R15AO75807 674 aaPredicted RBP23.51■■□□□ 1.35
PCDHA1-201ENST00000378133 FGD6Q6ZV73 1430 aa23.5■■□□□ 1.35
PCDHA1-201ENST00000378133 MTUS2Q5JR59 1369 aa23.5■■□□□ 1.35
PCDHA1-201ENST00000378133 EIF4G3O43432 1585 aaKnown RBP23.49■■□□□ 1.35
PCDHA1-201ENST00000378133 SNAPC4Q5SXM2 1469 aa23.48■■□□□ 1.35
PCDHA1-201ENST00000378133 GRIN2BQ13224 1484 aa23.47■■□□□ 1.35
PCDHA1-201ENST00000378133 ADAMTS12P58397 1594 aa23.43■■□□□ 1.34
PCDHA1-201ENST00000378133 PTPRKQ15262 1439 aa23.43■■□□□ 1.34
PCDHA1-201ENST00000378133 CCDC18Q5T9S5 1454 aa23.4■■□□□ 1.34
PCDHA1-201ENST00000378133 NEFLP07196 543 aa23.39■■□□□ 1.33
PCDHA1-201ENST00000378133 RBM19Q9Y4C8 960 aaKnown RBP23.38■■□□□ 1.33
PCDHA1-201ENST00000378133 TONSLQ96HA7 1378 aa23.38■■□□□ 1.33
PCDHA1-201ENST00000378133 SAMD9Q5K651 1589 aa23.37■■□□□ 1.33
PCDHA1-201ENST00000378133 HFM1A2PYH4 1435 aa23.37■■□□□ 1.33
PCDHA1-201ENST00000378133 LRRIQ1Q96JM4 1722 aa23.37■■□□□ 1.33
PCDHA1-201ENST00000378133 NCOA2Q15596 1464 aa23.36■■□□□ 1.33
PCDHA1-201ENST00000378133 UACAQ9BZF9 1416 aa23.34■■□□□ 1.33
PCDHA1-201ENST00000378133 MYOM3Q5VTT5 1437 aa23.33■■□□□ 1.33
PCDHA1-201ENST00000378133 PTPN23Q9H3S7 1636 aa23.32■■□□□ 1.32
PCDHA1-201ENST00000378133 NAIPQ13075 1403 aa23.31■■□□□ 1.32
PCDHA1-201ENST00000378133 ANP32CO43423 234 aa23.31■■□□□ 1.32
PCDHA1-201ENST00000378133 SUPT6HQ7KZ85 1726 aaKnown RBP23.27■■□□□ 1.32
PCDHA1-201ENST00000378133 CCER2I3L3R5 266 aa23.26■■□□□ 1.31
PCDHA1-201ENST00000378133 TRIM52Q96A61 297 aa23.26■■□□□ 1.31
PCDHA1-201ENST00000378133 MAGI1Q96QZ7 1491 aaPredicted RBP23.25■■□□□ 1.31
PCDHA1-201ENST00000378133 RRP7BPQ9NSQ0 103 aa23.25■■□□□ 1.31
PCDHA1-201ENST00000378133 CHIC2Q9UKJ5 165 aa23.24■■□□□ 1.31
PCDHA1-201ENST00000378133 EHBP1L1Q8N3D4 1523 aa23.24■■□□□ 1.31
PCDHA1-201ENST00000378133 MAGI3Q5TCQ9 1506 aa23.22■■□□□ 1.31
PCDHA1-201ENST00000378133 UGGT2Q9NYU1 1516 aa23.21■■□□□ 1.31
PCDHA1-201ENST00000378133 GRIN2AQ12879 1464 aa23.21■■□□□ 1.31
PCDHA1-201ENST00000378133 SYNJ2O15056 1496 aa23.18■■□□□ 1.3
PCDHA1-201ENST00000378133 ARHGEF11O15085 1522 aa23.17■■□□□ 1.3
PCDHA1-201ENST00000378133 ARID3CA6NKF2 412 aa23.16■■□□□ 1.3
PCDHA1-201ENST00000378133 IQGAP2Q13576 1575 aa23.15■■□□□ 1.3
PCDHA1-201ENST00000378133 ERICH6Q7L0X2 663 aa23.13■■□□□ 1.29
PCDHA1-201ENST00000378133 CHMP7Q8WUX9 453 aaPredicted RBP23.12■■□□□ 1.29
PCDHA1-201ENST00000378133 KDM5BQ9UGL1 1544 aa23.12■■□□□ 1.29
PCDHA1-201ENST00000378133 CEP170Q5SW79 1584 aa23.1■■□□□ 1.29
PCDHA1-201ENST00000378133 MSH5O43196 834 aa23.1■■□□□ 1.29
PCDHA1-201ENST00000378133 FBLN2P98095 1184 aa23.1■■□□□ 1.29
PCDHA1-201ENST00000378133 TCOF1Q13428 1488 aaKnown RBP23.1■■□□□ 1.29
PCDHA1-201ENST00000378133 EPRSP07814 1512 aaKnown RBP23.1■■□□□ 1.29
PCDHA1-201ENST00000378133 HECW1Q76N89 1606 aa23.08■■□□□ 1.29
PCDHA1-201ENST00000378133 KIAA0586Q9BVV6 1533 aa23.07■■□□□ 1.28
PCDHA1-201ENST00000378133 DENND4BO75064 1496 aaPredicted RBP23.07■■□□□ 1.28
PCDHA1-201ENST00000378133 CDK13Q14004 1512 aaKnown RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 206.4 ms