RNA–Protein interactions for RNA: ENST00000378133.4

PCDHA1-201, Transcript of protocadherin alpha 1, humanhuman

BASIC

Gene PCDHA1, Length 2,726 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-201ENST00000378133 NISCHQ9Y2I1 1504 aa33.79■■■■□ 3
PCDHA1-201ENST00000378133 CCDC180Q9P1Z9 1646 aa29.4■■■□□ 2.3
PCDHA1-201ENST00000378133 SHROOM4Q9ULL8 1493 aa29.03■■■□□ 2.24
PCDHA1-201ENST00000378133 ZCCHC6Q5VYS8 1495 aaKnown RBP28.58■■■□□ 2.17
PCDHA1-201ENST00000378133 SUPT5HO00267 1087 aaKnown RBP28.55■■■□□ 2.16
PCDHA1-201ENST00000378133 DCAF8L2P0C7V8 631 aa28.17■■■□□ 2.1
PCDHA1-201ENST00000378133 ABCC9O60706 1549 aa27.9■■■□□ 2.06
PCDHA1-201ENST00000378133 DCAF1Q9Y4B6 1507 aa27.86■■■□□ 2.05
PCDHA1-201ENST00000378133 CHIC1Q5VXU3 224 aa27.77■■■□□ 2.04
PCDHA1-201ENST00000378133 MYO15BQ96JP2 1530 aa27.66■■■□□ 2.02
PCDHA1-201ENST00000378133 HRCP23327 699 aa27.65■■■□□ 2.02
PCDHA1-201ENST00000378133 NACADO15069 1562 aa27.37■■□□□ 1.97
PCDHA1-201ENST00000378133 PCGF6Q9BYE7 350 aa27.23■■□□□ 1.95
PCDHA1-201ENST00000378133 SCRIBQ14160 1630 aa27.15■■□□□ 1.94
PCDHA1-201ENST00000378133 RB1CC1Q8TDY2 1594 aa27.15■■□□□ 1.94
PCDHA1-201ENST00000378133 PPARGC1BQ86YN6 1023 aaKnown RBP27.03■■□□□ 1.92
PCDHA1-201ENST00000378133 LOC105371045A0A1W2PR82 267 aa27.02■■□□□ 1.92
PCDHA1-201ENST00000378133 RSF1Q96T23 1441 aaPredicted RBP26.82■■□□□ 1.88
PCDHA1-201ENST00000378133 UNC13AQ9UPW8 1703 aa26.71■■□□□ 1.87
PCDHA1-201ENST00000378133 PELP1Q8IZL8 1130 aaKnown RBP26.57■■□□□ 1.84
PCDHA1-201ENST00000378133 TRIM41Q8WV44 630 aa26.55■■□□□ 1.84
PCDHA1-201ENST00000378133 TRIM26Q12899 539 aaPredicted RBP26.5■■□□□ 1.83
PCDHA1-201ENST00000378133 BICRAQ9NZM4 1560 aa26.42■■□□□ 1.82
PCDHA1-201ENST00000378133 CECR2Q9BXF3 1484 aa26.41■■□□□ 1.82
PCDHA1-201ENST00000378133 FAM9AQ8IZU1 332 aaPredicted RBP26.39■■□□□ 1.82
PCDHA1-201ENST00000378133 PABPN1Q86U42 306 aaKnown RBP eCLIP26.33■■□□□ 1.81
PCDHA1-201ENST00000378133 MROH2BQ7Z745 1585 aa26.3■■□□□ 1.8
PCDHA1-201ENST00000378133 EHMT2Q96KQ7 1210 aa26.21■■□□□ 1.79
PCDHA1-201ENST00000378133 ZEB1P37275 1124 aaPredicted RBP26.2■■□□□ 1.79
PCDHA1-201ENST00000378133 WIZO95785 1651 aa26.17■■□□□ 1.78
PCDHA1-201ENST00000378133 BAZ1AQ9NRL2 1556 aaPredicted RBP26.05■■□□□ 1.76
PCDHA1-201ENST00000378133 SMARCA4P51532 1647 aa25.98■■□□□ 1.75
PCDHA1-201ENST00000378133 SCAF1Q9H7N4 1312 aaKnown RBP25.96■■□□□ 1.75
PCDHA1-201ENST00000378133 EIF4G1Q04637 1599 aaKnown RBP25.79■■□□□ 1.72
PCDHA1-201ENST00000378133 MYT1Q01538 1121 aa25.72■■□□□ 1.71
PCDHA1-201ENST00000378133 TOP2AP11388 1531 aaKnown RBP25.7■■□□□ 1.71
PCDHA1-201ENST00000378133 CCDC88BA6NC98 1476 aa25.67■■□□□ 1.7
PCDHA1-201ENST00000378133 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
PCDHA1-201ENST00000378133 PEG3Q9GZU2 1588 aa25.62■■□□□ 1.69
PCDHA1-201ENST00000378133 SMARCA2P51531 1590 aa25.59■■□□□ 1.69
PCDHA1-201ENST00000378133 ATAD2BQ9ULI0 1458 aa25.54■■□□□ 1.68
PCDHA1-201ENST00000378133 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.46■■□□□ 1.67
PCDHA1-201ENST00000378133 ACIN1Q9UKV3 1341 aaKnown RBP25.46■■□□□ 1.67
PCDHA1-201ENST00000378133 SOGA1O94964 1423 aa25.46■■□□□ 1.67
PCDHA1-201ENST00000378133 BAZ1BQ9UIG0 1483 aaKnown RBP25.38■■□□□ 1.65
PCDHA1-201ENST00000378133 CCER1Q8TC90 406 aaPredicted RBP25.38■■□□□ 1.65
PCDHA1-201ENST00000378133 TTBK1Q5TCY1 1321 aaPredicted RBP25.38■■□□□ 1.65
PCDHA1-201ENST00000378133 NEUROD1Q13562 356 aa25.37■■□□□ 1.65
PCDHA1-201ENST00000378133 CEP162Q5TB80 1403 aa25.37■■□□□ 1.65
PCDHA1-201ENST00000378133 CSRNP3Q8WYN3 585 aa25.35■■□□□ 1.65
PCDHA1-201ENST00000378133 WRNQ14191 1432 aaPredicted RBP eCLIP25.34■■□□□ 1.65
PCDHA1-201ENST00000378133 RUSC2Q8N2Y8 1516 aa25.33■■□□□ 1.65
PCDHA1-201ENST00000378133 TNIKQ9UKE5 1360 aa25.32■■□□□ 1.64
PCDHA1-201ENST00000378133 UBTFP17480 764 aaKnown RBP25.3■■□□□ 1.64
PCDHA1-201ENST00000378133 NCAPD3P42695 1498 aa25.28■■□□□ 1.64
PCDHA1-201ENST00000378133 EEA1Q15075 1411 aa25.27■■□□□ 1.64
PCDHA1-201ENST00000378133 HMGXB3Q12766 1538 aa25.25■■□□□ 1.63
PCDHA1-201ENST00000378133 CC2D2AQ9P2K1 1620 aa25.23■■□□□ 1.63
PCDHA1-201ENST00000378133 GTF3C3Q9Y5Q9 886 aa25.22■■□□□ 1.63
PCDHA1-201ENST00000378133 CENPBP07199 599 aaPredicted RBP25.21■■□□□ 1.63
PCDHA1-201ENST00000378133 DIEXFQ68CQ4 756 aaKnown RBP25.21■■□□□ 1.63
PCDHA1-201ENST00000378133 GOLGA3Q08378 1498 aa25.13■■□□□ 1.61
PCDHA1-201ENST00000378133 SYNJ1O43426 1573 aa25.04■■□□□ 1.6
PCDHA1-201ENST00000378133 CEP164Q9UPV0 1460 aa24.97■■□□□ 1.59
PCDHA1-201ENST00000378133 KIF21BO75037 1637 aa24.9■■□□□ 1.58
PCDHA1-201ENST00000378133 CLIP1P30622 1438 aa24.88■■□□□ 1.57
PCDHA1-201ENST00000378133 HNRNPUL2Q1KMD3 747 aaKnown RBP24.82■■□□□ 1.56
PCDHA1-201ENST00000378133 RAPGEF2Q9Y4G8 1499 aa24.81■■□□□ 1.56
PCDHA1-201ENST00000378133 RANGAP1P46060 587 aaPredicted RBP24.81■■□□□ 1.56
PCDHA1-201ENST00000378133 ZNF316A6NFI3 1004 aaPredicted RBP24.81■■□□□ 1.56
PCDHA1-201ENST00000378133 VPS8Q8N3P4 1428 aa24.77■■□□□ 1.56
PCDHA1-201ENST00000378133 APLP2Q06481 763 aa24.75■■□□□ 1.55
PCDHA1-201ENST00000378133 CFTRP13569 1480 aa24.74■■□□□ 1.55
PCDHA1-201ENST00000378133 YTHDC1Q96MU7 727 aaKnown RBP24.71■■□□□ 1.55
PCDHA1-201ENST00000378133 DNAJC5BQ9UF47 199 aa24.7■■□□□ 1.55
PCDHA1-201ENST00000378133 TOP2BQ02880 1626 aa24.7■■□□□ 1.54
PCDHA1-201ENST00000378133 CADPSQ9ULU8 1353 aa24.64■■□□□ 1.54
PCDHA1-201ENST00000378133 PRDM2Q13029 1718 aa24.62■■□□□ 1.53
PCDHA1-201ENST00000378133 BIVM-ERCC5R4GMW8 1640 aa24.58■■□□□ 1.53
PCDHA1-201ENST00000378133 MIER1Q8N108 512 aa24.57■■□□□ 1.52
PCDHA1-201ENST00000378133 NESP48681 1621 aa24.53■■□□□ 1.52
PCDHA1-201ENST00000378133 PRXQ9BXM0 1461 aa24.52■■□□□ 1.52
PCDHA1-201ENST00000378133 ERICH3Q5RHP9 1530 aa24.48■■□□□ 1.51
PCDHA1-201ENST00000378133 CUX1P39880 1505 aa24.46■■□□□ 1.51
PCDHA1-201ENST00000378133 ARAP1Q96P48 1450 aa24.44■■□□□ 1.5
PCDHA1-201ENST00000378133 KANK4Q5T7N3 995 aaPredicted RBP24.42■■□□□ 1.5
PCDHA1-201ENST00000378133 LAMC3Q9Y6N6 1575 aa24.42■■□□□ 1.5
PCDHA1-201ENST00000378133 FANCD2Q9BXW9 1451 aa24.4■■□□□ 1.5
PCDHA1-201ENST00000378133 KIF27Q86VH2 1401 aa24.4■■□□□ 1.5
PCDHA1-201ENST00000378133 DHX57Q6P158 1386 aaKnown RBP24.28■■□□□ 1.48
PCDHA1-201ENST00000378133 CLSPNQ9HAW4 1339 aa24.25■■□□□ 1.47
PCDHA1-201ENST00000378133 ARHGAP35Q9NRY4 1499 aa24.22■■□□□ 1.47
PCDHA1-201ENST00000378133 KIF21AQ7Z4S6 1674 aa24.21■■□□□ 1.47
PCDHA1-201ENST00000378133 PDS5BQ9NTI5 1447 aa24.21■■□□□ 1.47
PCDHA1-201ENST00000378133 RRBP1Q9P2E9 1410 aaKnown RBP24.2■■□□□ 1.46
PCDHA1-201ENST00000378133 BCL11AQ9H165 835 aa24.19■■□□□ 1.46
PCDHA1-201ENST00000378133 DNMBPQ6XZF7 1577 aa24.17■■□□□ 1.46
PCDHA1-201ENST00000378133 CUX2O14529 1486 aa24.15■■□□□ 1.46
PCDHA1-201ENST00000378133 FGD5Q6ZNL6 1462 aa24.15■■□□□ 1.46
PCDHA1-201ENST00000378133 IGF1RP08069 1367 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms