RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 CDK11AQ9UQ88 783 aaPredicted RBP22.25■■□□□ 1.15
CKAP4-201ENST00000378026 SETD5Q9C0A6 1442 aa22.24■■□□□ 1.15
CKAP4-201ENST00000378026 ATP1B4Q9UN42 357 aaPredicted RBP22.23■■□□□ 1.15
CKAP4-201ENST00000378026 HNRNPUQ00839 825 aaKnown RBP eCLIP22.22■■□□□ 1.15
CKAP4-201ENST00000378026 ERICH3Q5RHP9 1530 aa22.19■■□□□ 1.14
CKAP4-201ENST00000378026 TOP2BQ02880 1626 aa22.19■■□□□ 1.14
CKAP4-201ENST00000378026 ARHGAP35Q9NRY4 1499 aa22.17■■□□□ 1.14
CKAP4-201ENST00000378026 ATAD2BQ9ULI0 1458 aa22.15■■□□□ 1.14
CKAP4-201ENST00000378026 FANCIQ9NVI1 1328 aa22.14■■□□□ 1.13
CKAP4-201ENST00000378026 P3H3Q8IVL6 736 aa22.11■■□□□ 1.13
CKAP4-201ENST00000378026 PEG3Q9GZU2 1588 aa22.11■■□□□ 1.13
CKAP4-201ENST00000378026 PHLDB1Q86UU1 1377 aa22.1■■□□□ 1.13
CKAP4-201ENST00000378026 KIF27Q86VH2 1401 aa22.07■■□□□ 1.12
CKAP4-201ENST00000378026 BICRAQ9NZM4 1560 aa22.04■■□□□ 1.12
CKAP4-201ENST00000378026 TONSLQ96HA7 1378 aa22.04■■□□□ 1.12
CKAP4-201ENST00000378026 DEKP35659 375 aaKnown RBP22.02■■□□□ 1.12
CKAP4-201ENST00000378026 TIMELESSQ9UNS1 1208 aa22.02■■□□□ 1.12
CKAP4-201ENST00000378026 B4GALNT3Q6L9W6 998 aa22■■□□□ 1.11
CKAP4-201ENST00000378026 BIVM-ERCC5R4GMW8 1640 aa21.99■■□□□ 1.11
CKAP4-201ENST00000378026 NBR1Q14596 966 aa21.99■■□□□ 1.11
CKAP4-201ENST00000378026 TIAM1Q13009 1591 aa21.97■■□□□ 1.11
CKAP4-201ENST00000378026 LRRC9Q6ZRR7 1453 aa21.96■■□□□ 1.11
CKAP4-201ENST00000378026 CUX1P39880 1505 aa21.95■■□□□ 1.1
CKAP4-201ENST00000378026 PPP4R2Q9NY27 417 aa21.94■■□□□ 1.1
CKAP4-201ENST00000378026 CCDC184Q52MB2 194 aa21.92■■□□□ 1.1
CKAP4-201ENST00000378026 FAM9BQ8IZU0 186 aa21.92■■□□□ 1.1
CKAP4-201ENST00000378026 PAK3O75914 559 aaPredicted RBP21.84■■□□□ 1.09
CKAP4-201ENST00000378026 CNGB1Q14028 1251 aaPredicted RBP21.83■■□□□ 1.08
CKAP4-201ENST00000378026 WASHC2AQ641Q2 1341 aa21.82■■□□□ 1.08
CKAP4-201ENST00000378026 IGF1RP08069 1367 aa21.82■■□□□ 1.08
CKAP4-201ENST00000378026 NOP58Q9Y2X3 529 aaKnown RBP21.82■■□□□ 1.08
CKAP4-201ENST00000378026 HSPA5P11021 654 aaKnown RBP21.82■■□□□ 1.08
CKAP4-201ENST00000378026 MYT1LQ9UL68 1186 aa21.81■■□□□ 1.08
CKAP4-201ENST00000378026 CARMIL1Q5VZK9 1371 aa21.78■■□□□ 1.08
CKAP4-201ENST00000378026 MAP3K1Q13233 1512 aa21.77■■□□□ 1.08
CKAP4-201ENST00000378026 MRS2Q9HD23 443 aa21.77■■□□□ 1.08
CKAP4-201ENST00000378026 ERICH6BQ5W0A0 696 aa21.77■■□□□ 1.08
CKAP4-201ENST00000378026 SENP3-EIF4A1A0A087X0R7 540 aa21.76■■□□□ 1.07
CKAP4-201ENST00000378026 PRKCSHP14314 528 aaPredicted RBP21.76■■□□□ 1.07
CKAP4-201ENST00000378026 CCDC18Q5T9S5 1454 aa21.74■■□□□ 1.07
CKAP4-201ENST00000378026 FHAD1B1AJZ9 1412 aa21.74■■□□□ 1.07
CKAP4-201ENST00000378026 FHOD3Q2V2M9 1422 aa21.73■■□□□ 1.07
CKAP4-201ENST00000378026 PCF11O94913 1555 aaKnown RBP21.71■■□□□ 1.07
CKAP4-201ENST00000378026 EIF4G2P78344 907 aaKnown RBP eCLIP21.69■■□□□ 1.06
CKAP4-201ENST00000378026 ANO8Q9HCE9 1232 aaPredicted RBP21.68■■□□□ 1.06
CKAP4-201ENST00000378026 C11orf95C9JLR9 678 aaPredicted RBP21.67■■□□□ 1.06
CKAP4-201ENST00000378026 PTPRKQ15262 1439 aa21.67■■□□□ 1.06
CKAP4-201ENST00000378026 PRKRIP1Q9H875 184 aaPredicted RBP21.67■■□□□ 1.06
CKAP4-201ENST00000378026 CHIC2Q9UKJ5 165 aa21.67■■□□□ 1.06
CKAP4-201ENST00000378026 RRP7BPQ9NSQ0 103 aa21.66■■□□□ 1.06
CKAP4-201ENST00000378026 UACAQ9BZF9 1416 aa21.66■■□□□ 1.06
CKAP4-201ENST00000378026 AQRO60306 1485 aaKnown RBP eCLIP21.65■■□□□ 1.06
CKAP4-201ENST00000378026 RTL5Q5HYW3 569 aaPredicted RBP21.64■■□□□ 1.05
CKAP4-201ENST00000378026 FGD6Q6ZV73 1430 aa21.63■■□□□ 1.05
CKAP4-201ENST00000378026 ZBED9Q6R2W3 1325 aa21.63■■□□□ 1.05
CKAP4-201ENST00000378026 ANP32AP39687 249 aaKnown RBP21.62■■□□□ 1.05
CKAP4-201ENST00000378026 CCDC136Q96JN2 1154 aa21.62■■□□□ 1.05
CKAP4-201ENST00000378026 MTUS2Q5JR59 1369 aa21.6■■□□□ 1.05
CKAP4-201ENST00000378026 CFAP43Q8NDM7 1665 aa21.6■■□□□ 1.05
CKAP4-201ENST00000378026 FOXD1Q16676 465 aa21.6■■□□□ 1.05
CKAP4-201ENST00000378026 CNTLNQ9NXG0 1405 aa21.6■■□□□ 1.05
CKAP4-201ENST00000378026 ZBTB47Q9UFB7 747 aaPredicted RBP21.59■■□□□ 1.05
CKAP4-201ENST00000378026 RTN4Q9NQC3 1192 aaKnown RBP21.59■■□□□ 1.05
CKAP4-201ENST00000378026 AKNAQ7Z591 1439 aa21.58■■□□□ 1.05
CKAP4-201ENST00000378026 POLR3GLQ9BT43 218 aa21.58■■□□□ 1.04
CKAP4-201ENST00000378026 HFM1A2PYH4 1435 aa21.58■■□□□ 1.04
CKAP4-201ENST00000378026 IPO9Q96P70 1041 aaKnown RBP21.57■■□□□ 1.04
CKAP4-201ENST00000378026 CFTRP13569 1480 aa21.56■■□□□ 1.04
CKAP4-201ENST00000378026 NPM2Q86SE8 214 aaKnown RBP21.56■■□□□ 1.04
CKAP4-201ENST00000378026 NAIPQ13075 1403 aa21.55■■□□□ 1.04
CKAP4-201ENST00000378026 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.55■■□□□ 1.04
CKAP4-201ENST00000378026 KDM5BQ9UGL1 1544 aa21.55■■□□□ 1.04
CKAP4-201ENST00000378026 L3MBTL2Q969R5 705 aa21.55■■□□□ 1.04
CKAP4-201ENST00000378026 PTPN23Q9H3S7 1636 aa21.54■■□□□ 1.04
CKAP4-201ENST00000378026 SALL2Q9Y467 1007 aaPredicted RBP21.54■■□□□ 1.04
CKAP4-201ENST00000378026 IL27Q8NEV9 243 aa21.53■■□□□ 1.04
CKAP4-201ENST00000378026 CCDC7Q96M83 1385 aa21.52■■□□□ 1.04
CKAP4-201ENST00000378026 CASKIN1Q8WXD9 1431 aa21.5■■□□□ 1.03
CKAP4-201ENST00000378026 FGD5Q6ZNL6 1462 aa21.5■■□□□ 1.03
CKAP4-201ENST00000378026 FYCO1Q9BQS8 1478 aa21.5■■□□□ 1.03
CKAP4-201ENST00000378026 FMN1Q68DA7 1419 aa21.5■■□□□ 1.03
CKAP4-201ENST00000378026 NCOA2Q15596 1464 aa21.47■■□□□ 1.03
CKAP4-201ENST00000378026 NCAPD3P42695 1498 aa21.46■■□□□ 1.03
CKAP4-201ENST00000378026 LAS1LQ9Y4W2 734 aaKnown RBP21.46■■□□□ 1.03
CKAP4-201ENST00000378026 NBPF8Q3BBV2 869 aa21.44■■□□□ 1.02
CKAP4-201ENST00000378026 NUDCQ9Y266 331 aa21.44■■□□□ 1.02
CKAP4-201ENST00000378026 KIF7Q2M1P5 1343 aa21.44■■□□□ 1.02
CKAP4-201ENST00000378026 MPHOSPH9Q99550 1183 aa21.43■■□□□ 1.02
CKAP4-201ENST00000378026 NCOA1Q15788 1441 aa21.42■■□□□ 1.02
CKAP4-201ENST00000378026 HMGXB3Q12766 1538 aa21.39■■□□□ 1.01
CKAP4-201ENST00000378026 MYOM3Q5VTT5 1437 aa21.39■■□□□ 1.01
CKAP4-201ENST00000378026 ARID3CA6NKF2 412 aa21.38■■□□□ 1.01
CKAP4-201ENST00000378026 SMG6Q86US8 1419 aaKnown RBP21.38■■□□□ 1.01
CKAP4-201ENST00000378026 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.37■■□□□ 1.01
CKAP4-201ENST00000378026 NEFMP07197 916 aa21.37■■□□□ 1.01
CKAP4-201ENST00000378026 ZNF326Q5BKZ1 582 aaKnown RBP21.37■■□□□ 1.01
CKAP4-201ENST00000378026 DENND4BO75064 1496 aaPredicted RBP21.36■■□□□ 1.01
CKAP4-201ENST00000378026 RAD54L2Q9Y4B4 1467 aa21.34■■□□□ 1.01
CKAP4-201ENST00000378026 EFCAB5A4FU69 1503 aa21.3■■□□□ 1
CKAP4-201ENST00000378026 SNAPC4Q5SXM2 1469 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms