RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 KCNH8Q96L42 1107 aa30.27■■■□□ 2.44
UPF3A-202ENST00000375299 SETD5Q9C0A6 1442 aa30.26■■■□□ 2.43
UPF3A-202ENST00000375299 CARMIL1Q5VZK9 1371 aa30.24■■■□□ 2.43
UPF3A-202ENST00000375299 WDR97A6NE52 1622 aa30.2■■■□□ 2.43
UPF3A-202ENST00000375299 LRRC9Q6ZRR7 1453 aa30.19■■■□□ 2.42
UPF3A-202ENST00000375299 FANCD2Q9BXW9 1451 aa30.17■■■□□ 2.42
UPF3A-202ENST00000375299 CFAP43Q8NDM7 1665 aa30.13■■■□□ 2.41
UPF3A-202ENST00000375299 PHLDB1Q86UU1 1377 aa30.12■■■□□ 2.41
UPF3A-202ENST00000375299 ANP32EQ9BTT0 268 aa30.12■■■□□ 2.41
UPF3A-202ENST00000375299 DDX10Q13206 875 aaKnown RBP30.08■■■□□ 2.41
UPF3A-202ENST00000375299 DNMBPQ6XZF7 1577 aa30.06■■■□□ 2.4
UPF3A-202ENST00000375299 SIN3AQ96ST3 1273 aa30.06■■■□□ 2.4
UPF3A-202ENST00000375299 TIMELESSQ9UNS1 1208 aa30.05■■■□□ 2.4
UPF3A-202ENST00000375299 FHAD1B1AJZ9 1412 aa30.04■■■□□ 2.4
UPF3A-202ENST00000375299 PPP1R15AO75807 674 aaPredicted RBP30.03■■■□□ 2.4
UPF3A-202ENST00000375299 FKBP8Q14318 412 aa30.03■■■□□ 2.4
UPF3A-202ENST00000375299 BCANQ96GW7 911 aa30.03■■■□□ 2.4
UPF3A-202ENST00000375299 PCF11O94913 1555 aaKnown RBP30.01■■■□□ 2.39
UPF3A-202ENST00000375299 ABCA10Q8WWZ4 1543 aa30■■■□□ 2.39
UPF3A-202ENST00000375299 FAM50AQ14320 339 aaKnown RBP29.99■■■□□ 2.39
UPF3A-202ENST00000375299 RAD54L2Q9Y4B4 1467 aa29.99■■■□□ 2.39
UPF3A-202ENST00000375299 TOPBP1Q92547 1522 aa29.98■■■□□ 2.39
UPF3A-202ENST00000375299 POLA1P09884 1462 aaPredicted RBP29.96■■■□□ 2.39
UPF3A-202ENST00000375299 CCER2I3L3R5 266 aa29.95■■■□□ 2.38
UPF3A-202ENST00000375299 NESP48681 1621 aa29.94■■■□□ 2.38
UPF3A-202ENST00000375299 NEFLP07196 543 aa29.89■■■□□ 2.37
UPF3A-202ENST00000375299 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.87■■■□□ 2.37
UPF3A-202ENST00000375299 CUL7Q14999 1698 aa29.86■■■□□ 2.37
UPF3A-202ENST00000375299 ANP32CO43423 234 aa29.85■■■□□ 2.37
UPF3A-202ENST00000375299 P3H3Q8IVL6 736 aa29.85■■■□□ 2.37
UPF3A-202ENST00000375299 FYCO1Q9BQS8 1478 aa29.83■■■□□ 2.37
UPF3A-202ENST00000375299 EFCAB5A4FU69 1503 aa29.82■■■□□ 2.36
UPF3A-202ENST00000375299 FHOD3Q2V2M9 1422 aa29.81■■■□□ 2.36
UPF3A-202ENST00000375299 HIRIP3Q9BW71 556 aaPredicted RBP29.8■■■□□ 2.36
UPF3A-202ENST00000375299 CTTNBP2Q8WZ74 1663 aa29.78■■■□□ 2.36
UPF3A-202ENST00000375299 LAMC3Q9Y6N6 1575 aa29.77■■■□□ 2.36
UPF3A-202ENST00000375299 TRIM52Q96A61 297 aa29.77■■■□□ 2.36
UPF3A-202ENST00000375299 AQRO60306 1485 aaKnown RBP eCLIP29.76■■■□□ 2.353e-6■□□□□ 10.3
UPF3A-202ENST00000375299 CASKIN1Q8WXD9 1431 aa29.76■■■□□ 2.35
UPF3A-202ENST00000375299 URB2Q14146 1524 aaKnown RBP29.75■■■□□ 2.35
UPF3A-202ENST00000375299 ATP1B4Q9UN42 357 aaPredicted RBP29.74■■■□□ 2.35
UPF3A-202ENST00000375299 RBM19Q9Y4C8 960 aaKnown RBP29.73■■■□□ 2.35
UPF3A-202ENST00000375299 TONSLQ96HA7 1378 aa29.71■■■□□ 2.35
UPF3A-202ENST00000375299 CCDC18Q5T9S5 1454 aa29.69■■■□□ 2.34
UPF3A-202ENST00000375299 FGD6Q6ZV73 1430 aa29.68■■■□□ 2.34
UPF3A-202ENST00000375299 ABCA5Q8WWZ7 1642 aa29.64■■■□□ 2.33
UPF3A-202ENST00000375299 UACAQ9BZF9 1416 aa29.64■■■□□ 2.33
UPF3A-202ENST00000375299 PTPN23Q9H3S7 1636 aa29.62■■■□□ 2.33
UPF3A-202ENST00000375299 HFM1A2PYH4 1435 aa29.62■■■□□ 2.33
UPF3A-202ENST00000375299 FMN1Q68DA7 1419 aa29.62■■■□□ 2.33
UPF3A-202ENST00000375299 TDRD9Q8NDG6 1382 aaKnown RBP29.59■■■□□ 2.33
UPF3A-202ENST00000375299 SNAPC4Q5SXM2 1469 aa29.58■■■□□ 2.33
UPF3A-202ENST00000375299 GAPVD1Q14C86 1478 aa29.56■■■□□ 2.32
UPF3A-202ENST00000375299 PDS5BQ9NTI5 1447 aa29.55■■■□□ 2.32
UPF3A-202ENST00000375299 PTPRKQ15262 1439 aa29.55■■■□□ 2.32
UPF3A-202ENST00000375299 SAMD9Q5K651 1589 aa29.54■■■□□ 2.32
UPF3A-202ENST00000375299 KDM5BQ9UGL1 1544 aa29.52■■■□□ 2.32
UPF3A-202ENST00000375299 MTUS2Q5JR59 1369 aa29.49■■■□□ 2.31
UPF3A-202ENST00000375299 NAIPQ13075 1403 aa29.49■■■□□ 2.31
UPF3A-202ENST00000375299 LRRIQ1Q96JM4 1722 aa29.47■■■□□ 2.31
UPF3A-202ENST00000375299 KIF21AQ7Z4S6 1674 aa29.46■■■□□ 2.31
UPF3A-202ENST00000375299 BCL11AQ9H165 835 aa29.46■■■□□ 2.31
UPF3A-202ENST00000375299 DNAJC5BQ9UF47 199 aa29.45■■■□□ 2.3
UPF3A-202ENST00000375299 MYOM3Q5VTT5 1437 aa29.43■■■□□ 2.3
UPF3A-202ENST00000375299 NCOA2Q15596 1464 aa29.43■■■□□ 2.3
UPF3A-202ENST00000375299 HNRNPUQ00839 825 aaKnown RBP eCLIP29.42■■■□□ 2.3
UPF3A-202ENST00000375299 GRIN2BQ13224 1484 aa29.42■■■□□ 2.3
UPF3A-202ENST00000375299 SUPT6HQ7KZ85 1726 aaKnown RBP29.41■■■□□ 2.3
UPF3A-202ENST00000375299 TARBP1Q13395 1621 aaKnown RBP29.4■■■□□ 2.3
UPF3A-202ENST00000375299 THOC2Q8NI27 1593 aaKnown RBP29.38■■■□□ 2.29
UPF3A-202ENST00000375299 EHBP1L1Q8N3D4 1523 aa29.36■■■□□ 2.29
UPF3A-202ENST00000375299 MSH5O43196 834 aa29.36■■■□□ 2.29
UPF3A-202ENST00000375299 FANCIQ9NVI1 1328 aa29.34■■■□□ 2.29
UPF3A-202ENST00000375299 HECW1Q76N89 1606 aa29.33■■■□□ 2.29
UPF3A-202ENST00000375299 WASHC2AQ641Q2 1341 aa29.32■■■□□ 2.28
UPF3A-202ENST00000375299 GCC2Q8IWJ2 1684 aa29.32■■■□□ 2.28
UPF3A-202ENST00000375299 CDK11AQ9UQ88 783 aaPredicted RBP29.32■■■□□ 2.28
UPF3A-202ENST00000375299 HSPA5P11021 654 aaKnown RBP29.3■■■□□ 2.28
UPF3A-202ENST00000375299 UGGT2Q9NYU1 1516 aa29.3■■■□□ 2.28
UPF3A-202ENST00000375299 ERICH6BQ5W0A0 696 aa29.28■■■□□ 2.28
UPF3A-202ENST00000375299 IRX6P78412 446 aaPredicted RBP29.27■■■□□ 2.28
UPF3A-202ENST00000375299 ARHGEF11O15085 1522 aa29.27■■■□□ 2.28
UPF3A-202ENST00000375299 PBRM1Q86U86 1689 aa29.25■■■□□ 2.27
UPF3A-202ENST00000375299 CNTLNQ9NXG0 1405 aa29.25■■■□□ 2.27
UPF3A-202ENST00000375299 DENND4BO75064 1496 aaPredicted RBP29.24■■■□□ 2.27
UPF3A-202ENST00000375299 TCOF1Q13428 1488 aaKnown RBP29.22■■■□□ 2.27
UPF3A-202ENST00000375299 MAGI3Q5TCQ9 1506 aa29.2■■■□□ 2.27
UPF3A-202ENST00000375299 EIF4G2P78344 907 aaKnown RBP eCLIP29.2■■■□□ 2.26
UPF3A-202ENST00000375299 AKNAQ7Z591 1439 aa29.19■■■□□ 2.26
UPF3A-202ENST00000375299 RRP7BPQ9NSQ0 103 aa29.17■■■□□ 2.26
UPF3A-202ENST00000375299 PPP4R2Q9NY27 417 aa29.17■■■□□ 2.26
UPF3A-202ENST00000375299 IQGAP2Q13576 1575 aa29.17■■■□□ 2.26
UPF3A-202ENST00000375299 ADAMTS12P58397 1594 aa29.16■■■□□ 2.26
UPF3A-202ENST00000375299 KDM6BO15054 1643 aa29.14■■■□□ 2.26
UPF3A-202ENST00000375299 NCOA1Q15788 1441 aa29.12■■■□□ 2.25
UPF3A-202ENST00000375299 CCDC184Q52MB2 194 aa29.11■■■□□ 2.25
UPF3A-202ENST00000375299 ERICH6Q7L0X2 663 aa29.11■■■□□ 2.25
UPF3A-202ENST00000375299 MRC2Q9UBG0 1479 aa29.11■■■□□ 2.25
UPF3A-202ENST00000375299 CHIC2Q9UKJ5 165 aa29.09■■■□□ 2.25
UPF3A-202ENST00000375299 CCDC7Q96M83 1385 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms