RNA–Protein interactions for RNA: ENST00000375224.1

UBR4-202, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 3,475 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-202ENST00000375224 SCAF1Q9H7N4 1312 aaKnown RBP12.34□□□□□ -0.43
UBR4-202ENST00000375224 TARBP1Q13395 1621 aaKnown RBP12.33□□□□□ -0.44
UBR4-202ENST00000375224 TDRD9Q8NDG6 1382 aaKnown RBP12.32□□□□□ -0.44
UBR4-202ENST00000375224 KANK4Q5T7N3 995 aaPredicted RBP12.29□□□□□ -0.44
UBR4-202ENST00000375224 PRKCSHP14314 528 aaPredicted RBP12.29□□□□□ -0.44
UBR4-202ENST00000375224 HNRNPUL2Q1KMD3 747 aaKnown RBP12.29□□□□□ -0.44
UBR4-202ENST00000375224 TIAM1Q13009 1591 aa12.28□□□□□ -0.44
UBR4-202ENST00000375224 RRBP1Q9P2E9 1410 aaKnown RBP12.27□□□□□ -0.44
UBR4-202ENST00000375224 ERICH6Q7L0X2 663 aa12.27□□□□□ -0.44
UBR4-202ENST00000375224 AQRO60306 1485 aaKnown RBP eCLIP12.27□□□□□ -0.457e-8■■■■■ 33.4
UBR4-202ENST00000375224 WDR62O43379 1518 aa12.26□□□□□ -0.45
UBR4-202ENST00000375224 PBRM1Q86U86 1689 aa12.26□□□□□ -0.45
UBR4-202ENST00000375224 IFT140Q96RY7 1462 aa12.25□□□□□ -0.45
UBR4-202ENST00000375224 FYCO1Q9BQS8 1478 aa12.25□□□□□ -0.45
UBR4-202ENST00000375224 FMN1Q68DA7 1419 aa12.25□□□□□ -0.45
UBR4-202ENST00000375224 CFAP43Q8NDM7 1665 aa12.24□□□□□ -0.45
UBR4-202ENST00000375224 CASKIN1Q8WXD9 1431 aa12.24□□□□□ -0.45
UBR4-202ENST00000375224 LRRC9Q6ZRR7 1453 aa12.23□□□□□ -0.45
UBR4-202ENST00000375224 FHOD3Q2V2M9 1422 aa12.23□□□□□ -0.45
UBR4-202ENST00000375224 PCF11O94913 1555 aaKnown RBP12.23□□□□□ -0.45
UBR4-202ENST00000375224 GRIN2BQ13224 1484 aa12.23□□□□□ -0.45
UBR4-202ENST00000375224 CCNB3Q8WWL7 1395 aa12.22□□□□□ -0.45
UBR4-202ENST00000375224 SAMD9Q5K651 1589 aa12.22□□□□□ -0.45
UBR4-202ENST00000375224 P3H3Q8IVL6 736 aa12.21□□□□□ -0.45
UBR4-202ENST00000375224 ADAMTS12P58397 1594 aa12.2□□□□□ -0.46
UBR4-202ENST00000375224 ERCC6Q03468 1493 aa12.2□□□□□ -0.46
UBR4-202ENST00000375224 BCL11AQ9H165 835 aa12.2□□□□□ -0.46
UBR4-202ENST00000375224 CLSPNQ9HAW4 1339 aa12.18□□□□□ -0.46
UBR4-202ENST00000375224 ATP1B4Q9UN42 357 aaPredicted RBP12.17□□□□□ -0.46
UBR4-202ENST00000375224 THOC2Q8NI27 1593 aaKnown RBP12.16□□□□□ -0.46
UBR4-202ENST00000375224 IQGAP2Q13576 1575 aa12.15□□□□□ -0.46
UBR4-202ENST00000375224 SNAPC4Q5SXM2 1469 aa12.15□□□□□ -0.46
UBR4-202ENST00000375224 ZNF608Q9ULD9 1512 aaPredicted RBP12.12□□□□□ -0.47
UBR4-202ENST00000375224 PHLDB1Q86UU1 1377 aa12.11□□□□□ -0.47
UBR4-202ENST00000375224 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.11□□□□□ -0.47
UBR4-202ENST00000375224 EIF4G3O43432 1585 aaKnown RBP12.11□□□□□ -0.47
UBR4-202ENST00000375224 UGGT2Q9NYU1 1516 aa12.1□□□□□ -0.47
UBR4-202ENST00000375224 CCDC18Q5T9S5 1454 aa12.09□□□□□ -0.47
UBR4-202ENST00000375224 MAGI1Q96QZ7 1491 aaPredicted RBP12.09□□□□□ -0.47
UBR4-202ENST00000375224 MTUS2Q5JR59 1369 aa12.09□□□□□ -0.47
UBR4-202ENST00000375224 KIAA0586Q9BVV6 1533 aa12.09□□□□□ -0.47
UBR4-202ENST00000375224 CENPBP07199 599 aaPredicted RBP12.09□□□□□ -0.47
UBR4-202ENST00000375224 DHX57Q6P158 1386 aaKnown RBP12.08□□□□□ -0.47
UBR4-202ENST00000375224 HECW1Q76N89 1606 aa12.07□□□□□ -0.48
UBR4-202ENST00000375224 GRIN2AQ12879 1464 aa12.07□□□□□ -0.48
UBR4-202ENST00000375224 EHBP1L1Q8N3D4 1523 aa12.06□□□□□ -0.48
UBR4-202ENST00000375224 FAM50AQ14320 339 aaKnown RBP12.06□□□□□ -0.48
UBR4-202ENST00000375224 ITGAEP38570 1179 aa12.05□□□□□ -0.48
UBR4-202ENST00000375224 SUPT6HQ7KZ85 1726 aaKnown RBP12.05□□□□□ -0.48
UBR4-202ENST00000375224 LRRIQ1Q96JM4 1722 aa12.05□□□□□ -0.48
UBR4-202ENST00000375224 SETD5Q9C0A6 1442 aa12.04□□□□□ -0.48
UBR4-202ENST00000375224 SYNJ2O15056 1496 aa12.04□□□□□ -0.48
UBR4-202ENST00000375224 ZNF316A6NFI3 1004 aaPredicted RBP12.03□□□□□ -0.48
UBR4-202ENST00000375224 FGD6Q6ZV73 1430 aa12.03□□□□□ -0.48
UBR4-202ENST00000375224 RAB3GAP2Q9H2M9 1393 aa12.02□□□□□ -0.49
UBR4-202ENST00000375224 CHMP7Q8WUX9 453 aaPredicted RBP12.02□□□□□ -0.49
UBR4-202ENST00000375224 NCOA2Q15596 1464 aa12.01□□□□□ -0.49
UBR4-202ENST00000375224 KIAA0556O60303 1618 aa12.01□□□□□ -0.49
UBR4-202ENST00000375224 MYOM3Q5VTT5 1437 aa12□□□□□ -0.49
UBR4-202ENST00000375224 EPRSP07814 1512 aaKnown RBP12□□□□□ -0.49
UBR4-202ENST00000375224 DIEXFQ68CQ4 756 aaKnown RBP12□□□□□ -0.49
UBR4-202ENST00000375224 DISP1Q96F81 1524 aa11.99□□□□□ -0.49
UBR4-202ENST00000375224 ARHGEF11O15085 1522 aa11.98□□□□□ -0.49
UBR4-202ENST00000375224 NUP160Q12769 1436 aa11.96□□□□□ -0.49
UBR4-202ENST00000375224 CEP170Q5SW79 1584 aa11.96□□□□□ -0.5
UBR4-202ENST00000375224 CARMIL2Q6F5E8 1435 aa11.95□□□□□ -0.5
UBR4-202ENST00000375224 RAPGEF6Q8TEU7 1601 aa11.94□□□□□ -0.5
UBR4-202ENST00000375224 MAGI3Q5TCQ9 1506 aa11.94□□□□□ -0.5
UBR4-202ENST00000375224 CDK11AQ9UQ88 783 aaPredicted RBP11.94□□□□□ -0.5
UBR4-202ENST00000375224 PTPN23Q9H3S7 1636 aa11.94□□□□□ -0.5
UBR4-202ENST00000375224 FBLN2P98095 1184 aa11.93□□□□□ -0.5
UBR4-202ENST00000375224 MIA2Q96PC5 1412 aa11.93□□□□□ -0.5
UBR4-202ENST00000375224 TCOF1Q13428 1488 aaKnown RBP11.93□□□□□ -0.5
UBR4-202ENST00000375224 CDK13Q14004 1512 aaKnown RBP11.92□□□□□ -0.5
UBR4-202ENST00000375224 HFM1A2PYH4 1435 aa11.91□□□□□ -0.5
UBR4-202ENST00000375224 ACIN1Q9UKV3 1341 aaKnown RBP11.91□□□□□ -0.5
UBR4-202ENST00000375224 JPH4Q96JJ6 628 aa11.91□□□□□ -0.5
UBR4-202ENST00000375224 MAPKBP1O60336 1514 aa11.91□□□□□ -0.5
UBR4-202ENST00000375224 NUP153P49790 1475 aaKnown RBP11.9□□□□□ -0.5
UBR4-202ENST00000375224 TIMELESSQ9UNS1 1208 aa11.9□□□□□ -0.51
UBR4-202ENST00000375224 GTF3C3Q9Y5Q9 886 aa11.88□□□□□ -0.51
UBR4-202ENST00000375224 AKNAQ7Z591 1439 aa11.87□□□□□ -0.51
UBR4-202ENST00000375224 PTPRKQ15262 1439 aa11.86□□□□□ -0.51
UBR4-202ENST00000375224 NAIPQ13075 1403 aa11.85□□□□□ -0.51
UBR4-202ENST00000375224 UACAQ9BZF9 1416 aa11.85□□□□□ -0.51
UBR4-202ENST00000375224 TROQ12816 1431 aaPredicted RBP11.85□□□□□ -0.51
UBR4-202ENST00000375224 ARID3CA6NKF2 412 aa11.83□□□□□ -0.52
UBR4-202ENST00000375224 GCC2Q8IWJ2 1684 aa11.83□□□□□ -0.52
UBR4-202ENST00000375224 PLB1Q6P1J6 1458 aa11.83□□□□□ -0.52
UBR4-202ENST00000375224 ADCY10Q96PN6 1610 aa11.82□□□□□ -0.52
UBR4-202ENST00000375224 ITSN2Q9NZM3 1697 aa11.82□□□□□ -0.52
UBR4-202ENST00000375224 ABCA8O94911 1581 aa11.82□□□□□ -0.52
UBR4-202ENST00000375224 SLC24A1O60721 1099 aa11.8□□□□□ -0.52
UBR4-202ENST00000375224 ROCK1Q13464 1354 aa11.8□□□□□ -0.52
UBR4-202ENST00000375224 CHD1O14646 1710 aa11.79□□□□□ -0.52
UBR4-202ENST00000375224 DNMT1P26358 1616 aaKnown RBP11.79□□□□□ -0.52
UBR4-202ENST00000375224 PRG4Q92954 1404 aaPredicted RBP11.79□□□□□ -0.52
UBR4-202ENST00000375224 PLEKHD1A6NEE1 506 aa11.78□□□□□ -0.52
UBR4-202ENST00000375224 NEUROD1Q13562 356 aa11.78□□□□□ -0.52
UBR4-202ENST00000375224 DAPK1P53355 1430 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms