RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 AEBP2Q6ZN18 517 aaPredicted RBP24.3■■□□□ 1.48
CXCL12-202ENST00000374426 KIF13AQ9H1H9 1805 aa24.28■■□□□ 1.48
CXCL12-202ENST00000374426 KIF27Q86VH2 1401 aa24.28■■□□□ 1.48
CXCL12-202ENST00000374426 KIAA0586Q9BVV6 1533 aa24.26■■□□□ 1.47
CXCL12-202ENST00000374426 CUL7Q14999 1698 aa24.23■■□□□ 1.47
CXCL12-202ENST00000374426 ADCY10Q96PN6 1610 aa24.2■■□□□ 1.46
CXCL12-202ENST00000374426 ABCC10Q5T3U5 1492 aa24.19■■□□□ 1.46
CXCL12-202ENST00000374426 NPM1P06748 294 aaKnown RBP eCLIP24.19■■□□□ 1.46
CXCL12-202ENST00000374426 MAPKBP1O60336 1514 aa24.19■■□□□ 1.46
CXCL12-202ENST00000374426 FAM69CQ0P6D2 419 aa24.18■■□□□ 1.46
CXCL12-202ENST00000374426 CARMIL1Q5VZK9 1371 aa24.14■■□□□ 1.45
CXCL12-202ENST00000374426 DIP2BQ9P265 1576 aa24.12■■□□□ 1.45
CXCL12-202ENST00000374426 PTPRGP23470 1445 aa24.07■■□□□ 1.44
CXCL12-202ENST00000374426 TNIKQ9UKE5 1360 aa24.01■■□□□ 1.43
CXCL12-202ENST00000374426 CARMIL2Q6F5E8 1435 aa24.01■■□□□ 1.43
CXCL12-202ENST00000374426 TTBK1Q5TCY1 1321 aaPredicted RBP24■■□□□ 1.43
CXCL12-202ENST00000374426 IQGAP2Q13576 1575 aa23.99■■□□□ 1.43
CXCL12-202ENST00000374426 ABCC2Q92887 1545 aa23.95■■□□□ 1.43
CXCL12-202ENST00000374426 KDM6BO15054 1643 aa23.92■■□□□ 1.42
CXCL12-202ENST00000374426 TSPOAP1O95153 1857 aa23.92■■□□□ 1.42
CXCL12-202ENST00000374426 DISP1Q96F81 1524 aa23.92■■□□□ 1.42
CXCL12-202ENST00000374426 UHRF1BP1LA0JNW5 1464 aa23.9■■□□□ 1.42
CXCL12-202ENST00000374426 RAPGEF2Q9Y4G8 1499 aa23.89■■□□□ 1.42
CXCL12-202ENST00000374426 ASXL2Q76L83 1435 aa23.89■■□□□ 1.41
CXCL12-202ENST00000374426 UACAQ9BZF9 1416 aa23.87■■□□□ 1.41
CXCL12-202ENST00000374426 PLB1Q6P1J6 1458 aa23.87■■□□□ 1.41
CXCL12-202ENST00000374426 UGGT2Q9NYU1 1516 aa23.85■■□□□ 1.41
CXCL12-202ENST00000374426 GLI2P10070 1586 aa23.82■■□□□ 1.4
CXCL12-202ENST00000374426 KDM5BQ9UGL1 1544 aa23.79■■□□□ 1.4
CXCL12-202ENST00000374426 KDM4FA0A1W2PPD8 638 aa23.79■■□□□ 1.4
CXCL12-202ENST00000374426 KIAA0556O60303 1618 aa23.78■■□□□ 1.4
CXCL12-202ENST00000374426 PPRC1Q5VV67 1664 aaKnown RBP23.78■■□□□ 1.4
CXCL12-202ENST00000374426 EPRSP07814 1512 aaKnown RBP23.74■■□□□ 1.39
CXCL12-202ENST00000374426 ZCCHC11Q5TAX3 1644 aaKnown RBP23.72■■□□□ 1.39
CXCL12-202ENST00000374426 MAP3K4Q9Y6R4 1608 aa23.69■■□□□ 1.38
CXCL12-202ENST00000374426 COL17A1Q9UMD9 1497 aaPredicted RBP23.68■■□□□ 1.38
CXCL12-202ENST00000374426 CTTNBP2Q8WZ74 1663 aa23.67■■□□□ 1.38
CXCL12-202ENST00000374426 PRXQ9BXM0 1461 aa23.64■■□□□ 1.38
CXCL12-202ENST00000374426 WDR7Q9Y4E6 1490 aa23.63■■□□□ 1.37
CXCL12-202ENST00000374426 GOLGA3Q08378 1498 aa23.62■■□□□ 1.37
CXCL12-202ENST00000374426 TEX14Q8IWB6 1497 aa23.62■■□□□ 1.37
CXCL12-202ENST00000374426 ABCA8O94911 1581 aa23.59■■□□□ 1.37
CXCL12-202ENST00000374426 ADGRL1O94910 1474 aa23.56■■□□□ 1.36
CXCL12-202ENST00000374426 KCNH8Q96L42 1107 aa23.5■■□□□ 1.35
CXCL12-202ENST00000374426 CD109Q6YHK3 1445 aa23.5■■□□□ 1.35
CXCL12-202ENST00000374426 MAGI3Q5TCQ9 1506 aa23.49■■□□□ 1.35
CXCL12-202ENST00000374426 CFAP43Q8NDM7 1665 aa23.47■■□□□ 1.35
CXCL12-202ENST00000374426 P3H3Q8IVL6 736 aa23.43■■□□□ 1.34
CXCL12-202ENST00000374426 ARID3CA6NKF2 412 aa23.41■■□□□ 1.34
CXCL12-202ENST00000374426 CSRNP3Q8WYN3 585 aa23.41■■□□□ 1.34
CXCL12-202ENST00000374426 ATP10BO94823 1461 aa23.4■■□□□ 1.34
CXCL12-202ENST00000374426 FAM9AQ8IZU1 332 aaPredicted RBP23.37■■□□□ 1.33
CXCL12-202ENST00000374426 SAMD9Q5K651 1589 aa23.36■■□□□ 1.33
CXCL12-202ENST00000374426 ARAP3Q8WWN8 1544 aa23.32■■□□□ 1.32
CXCL12-202ENST00000374426 ABCA9Q8IUA7 1624 aa23.29■■□□□ 1.32
CXCL12-202ENST00000374426 RAPGEF6Q8TEU7 1601 aa23.29■■□□□ 1.32
CXCL12-202ENST00000374426 HECW2Q9P2P5 1572 aa23.27■■□□□ 1.32
CXCL12-202ENST00000374426 EEA1Q15075 1411 aa23.26■■□□□ 1.31
CXCL12-202ENST00000374426 KIF21BO75037 1637 aa23.24■■□□□ 1.31
CXCL12-202ENST00000374426 NUP153P49790 1475 aaKnown RBP23.24■■□□□ 1.31
CXCL12-202ENST00000374426 PHLDB1Q86UU1 1377 aa23.23■■□□□ 1.31
CXCL12-202ENST00000374426 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.22■■□□□ 1.31
CXCL12-202ENST00000374426 RANGAP1P46060 587 aaPredicted RBP23.22■■□□□ 1.31
CXCL12-202ENST00000374426 HNRNPUL2Q1KMD3 747 aaKnown RBP23.22■■□□□ 1.31
CXCL12-202ENST00000374426 FHOD3Q2V2M9 1422 aa23.22■■□□□ 1.31
CXCL12-202ENST00000374426 NEO1Q92859 1461 aa23.18■■□□□ 1.3
CXCL12-202ENST00000374426 RAPGEF3O95398 923 aa23.18■■□□□ 1.3
CXCL12-202ENST00000374426 ILDR1Q86SU0 546 aaPredicted RBP23.18■■□□□ 1.3
CXCL12-202ENST00000374426 FRMPD1Q5SYB0 1578 aa23.11■■□□□ 1.29
CXCL12-202ENST00000374426 PLEKHD1A6NEE1 506 aa23.1■■□□□ 1.29
CXCL12-202ENST00000374426 EFCAB5A4FU69 1503 aa23.09■■□□□ 1.29
CXCL12-202ENST00000374426 ADAMTSL3P82987 1691 aa23.08■■□□□ 1.29
CXCL12-202ENST00000374426 PTPRMP28827 1452 aa23.05■■□□□ 1.28
CXCL12-202ENST00000374426 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.03■■□□□ 1.28
CXCL12-202ENST00000374426 AKNAQ7Z591 1439 aa23.02■■□□□ 1.28
CXCL12-202ENST00000374426 FANCAO15360 1455 aa23.02■■□□□ 1.28
CXCL12-202ENST00000374426 DENND4BO75064 1496 aaPredicted RBP23.02■■□□□ 1.28
CXCL12-202ENST00000374426 BCORL1Q5H9F3 1711 aa23■■□□□ 1.27
CXCL12-202ENST00000374426 TTC37Q6PGP7 1564 aa23■■□□□ 1.27
CXCL12-202ENST00000374426 ARID4BQ4LE39 1312 aaPredicted RBP23■■□□□ 1.27
CXCL12-202ENST00000374426 RICTORQ6R327 1708 aa22.99■■□□□ 1.27
CXCL12-202ENST00000374426 CDK13Q14004 1512 aaKnown RBP22.99■■□□□ 1.27
CXCL12-202ENST00000374426 ARHGEF40Q8TER5 1519 aa22.99■■□□□ 1.27
CXCL12-202ENST00000374426 CFAP74Q9C0B2 1584 aa22.97■■□□□ 1.27
CXCL12-202ENST00000374426 MADDQ8WXG6 1647 aa22.97■■□□□ 1.27
CXCL12-202ENST00000374426 EHMT2Q96KQ7 1210 aa22.94■■□□□ 1.26
CXCL12-202ENST00000374426 UBTFP17480 764 aaKnown RBP22.93■■□□□ 1.26
CXCL12-202ENST00000374426 ZMYM4Q5VZL5 1548 aa22.92■■□□□ 1.26
CXCL12-202ENST00000374426 ARHGAP35Q9NRY4 1499 aa22.9■■□□□ 1.26
CXCL12-202ENST00000374426 PLCH2O75038 1416 aa22.9■■□□□ 1.26
CXCL12-202ENST00000374426 FMN1Q68DA7 1419 aa22.9■■□□□ 1.26
CXCL12-202ENST00000374426 YEATS2Q9ULM3 1422 aa22.9■■□□□ 1.26
CXCL12-202ENST00000374426 ZFYVE16Q7Z3T8 1539 aa22.87■■□□□ 1.25
CXCL12-202ENST00000374426 ATP1B4Q9UN42 357 aaPredicted RBP22.87■■□□□ 1.25
CXCL12-202ENST00000374426 HECW1Q76N89 1606 aa22.86■■□□□ 1.25
CXCL12-202ENST00000374426 MAGI2Q86UL8 1455 aa22.86■■□□□ 1.25
CXCL12-202ENST00000374426 PCF11O94913 1555 aaKnown RBP22.86■■□□□ 1.25
CXCL12-202ENST00000374426 SCAPERQ9BY12 1400 aa22.86■■□□□ 1.25
CXCL12-202ENST00000374426 CHIC1Q5VXU3 224 aa22.86■■□□□ 1.25
CXCL12-202ENST00000374426 RIMS1Q86UR5 1692 aaKnown RBP22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms