RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 HRCP23327 699 aa22.82■■□□□ 1.24
HMGA1-203ENST00000374116 KIF21BO75037 1637 aa22.82■■□□□ 1.24
HMGA1-203ENST00000374116 UBTFP17480 764 aaKnown RBP22.78■■□□□ 1.24
HMGA1-203ENST00000374116 RANGAP1P46060 587 aaPredicted RBP22.78■■□□□ 1.24
HMGA1-203ENST00000374116 KIAA0586Q9BVV6 1533 aa22.77■■□□□ 1.24
HMGA1-203ENST00000374116 JPH4Q96JJ6 628 aa22.75■■□□□ 1.23
HMGA1-203ENST00000374116 GOLGA3Q08378 1498 aa22.74■■□□□ 1.23
HMGA1-203ENST00000374116 CTTNBP2Q8WZ74 1663 aa22.73■■□□□ 1.23
HMGA1-203ENST00000374116 ERCC6L2Q5T890 1561 aa22.72■■□□□ 1.23
HMGA1-203ENST00000374116 IQGAP2Q13576 1575 aa22.71■■□□□ 1.23
HMGA1-203ENST00000374116 ARHGEF11O15085 1522 aa22.69■■□□□ 1.22
HMGA1-203ENST00000374116 SHROOM2Q13796 1616 aa22.68■■□□□ 1.22
HMGA1-203ENST00000374116 PRG4Q92954 1404 aaPredicted RBP22.68■■□□□ 1.22
HMGA1-203ENST00000374116 RIMBP3CA6NJZ7 1639 aa22.67■■□□□ 1.22
HMGA1-203ENST00000374116 RIMBP3BA6NNM3 1639 aa22.67■■□□□ 1.22
HMGA1-203ENST00000374116 RIMBP3Q9UFD9 1639 aa22.67■■□□□ 1.22
HMGA1-203ENST00000374116 TTBK1Q5TCY1 1321 aaPredicted RBP22.65■■□□□ 1.22
HMGA1-203ENST00000374116 P3H3Q8IVL6 736 aa22.61■■□□□ 1.21
HMGA1-203ENST00000374116 CYB5RLQ6IPT4 315 aa22.57■■□□□ 1.2
HMGA1-203ENST00000374116 UGGT2Q9NYU1 1516 aa22.56■■□□□ 1.2
HMGA1-203ENST00000374116 DISP1Q96F81 1524 aa22.56■■□□□ 1.2
HMGA1-203ENST00000374116 ARAP1Q96P48 1450 aa22.54■■□□□ 1.2
HMGA1-203ENST00000374116 CARMIL2Q6F5E8 1435 aa22.51■■□□□ 1.19
HMGA1-203ENST00000374116 KIAA0556O60303 1618 aa22.51■■□□□ 1.19
HMGA1-203ENST00000374116 TNIKQ9UKE5 1360 aa22.51■■□□□ 1.19
HMGA1-203ENST00000374116 PCGF6Q9BYE7 350 aa22.5■■□□□ 1.19
HMGA1-203ENST00000374116 PELP1Q8IZL8 1130 aaKnown RBP22.45■■□□□ 1.19
HMGA1-203ENST00000374116 SAMD9Q5K651 1589 aa22.44■■□□□ 1.18
HMGA1-203ENST00000374116 FHOD3Q2V2M9 1422 aa22.44■■□□□ 1.18
HMGA1-203ENST00000374116 PTPRGP23470 1445 aa22.42■■□□□ 1.18
HMGA1-203ENST00000374116 ARHGAP35Q9NRY4 1499 aa22.41■■□□□ 1.18
HMGA1-203ENST00000374116 CLIP1P30622 1438 aa22.38■■□□□ 1.17
HMGA1-203ENST00000374116 CEP162Q5TB80 1403 aa22.38■■□□□ 1.17
HMGA1-203ENST00000374116 EFCAB5A4FU69 1503 aa22.35■■□□□ 1.17
HMGA1-203ENST00000374116 TRIM26Q12899 539 aaPredicted RBP22.34■■□□□ 1.17
HMGA1-203ENST00000374116 PLB1Q6P1J6 1458 aa22.33■■□□□ 1.16
HMGA1-203ENST00000374116 ARID3CA6NKF2 412 aa22.31■■□□□ 1.16
HMGA1-203ENST00000374116 ADCY10Q96PN6 1610 aa22.28■■□□□ 1.16
HMGA1-203ENST00000374116 UACAQ9BZF9 1416 aa22.27■■□□□ 1.15
HMGA1-203ENST00000374116 ATP1B4Q9UN42 357 aaPredicted RBP22.24■■□□□ 1.15
HMGA1-203ENST00000374116 ABCA8O94911 1581 aa22.22■■□□□ 1.15
HMGA1-203ENST00000374116 ABCC2Q92887 1545 aa22.2■■□□□ 1.14
HMGA1-203ENST00000374116 RAPGEF6Q8TEU7 1601 aa22.19■■□□□ 1.14
HMGA1-203ENST00000374116 FMN1Q68DA7 1419 aa22.18■■□□□ 1.14
HMGA1-203ENST00000374116 NPM1P06748 294 aaKnown RBP eCLIP22.15■■□□□ 1.14
HMGA1-203ENST00000374116 UHRF1BP1LA0JNW5 1464 aa22.15■■□□□ 1.14
HMGA1-203ENST00000374116 NUP153P49790 1475 aaKnown RBP22.13■■□□□ 1.13
HMGA1-203ENST00000374116 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.13■■□□□ 1.13
HMGA1-203ENST00000374116 HNRNPUL2Q1KMD3 747 aaKnown RBP22.13■■□□□ 1.13
HMGA1-203ENST00000374116 PCF11O94913 1555 aaKnown RBP22.13■■□□□ 1.13
HMGA1-203ENST00000374116 ZCCHC11Q5TAX3 1644 aaKnown RBP22.11■■□□□ 1.13
HMGA1-203ENST00000374116 ATP10BO94823 1461 aa22.09■■□□□ 1.13
HMGA1-203ENST00000374116 KDM5BQ9UGL1 1544 aa22.09■■□□□ 1.13
HMGA1-203ENST00000374116 LRRIQ1Q96JM4 1722 aa22.08■■□□□ 1.13
HMGA1-203ENST00000374116 CDK13Q14004 1512 aaKnown RBP22.08■■□□□ 1.13
HMGA1-203ENST00000374116 CASKIN1Q8WXD9 1431 aa22.06■■□□□ 1.12
HMGA1-203ENST00000374116 HECW1Q76N89 1606 aa22.05■■□□□ 1.12
HMGA1-203ENST00000374116 VPS8Q8N3P4 1428 aa22.04■■□□□ 1.12
HMGA1-203ENST00000374116 EPRSP07814 1512 aaKnown RBP22.03■■□□□ 1.12
HMGA1-203ENST00000374116 ASXL2Q76L83 1435 aa22.02■■□□□ 1.12
HMGA1-203ENST00000374116 TRHP20396 242 aaPredicted RBP22.01■■□□□ 1.11
HMGA1-203ENST00000374116 FYCO1Q9BQS8 1478 aa22.01■■□□□ 1.11
HMGA1-203ENST00000374116 KCNH8Q96L42 1107 aa21.99■■□□□ 1.11
HMGA1-203ENST00000374116 MAPKBP1O60336 1514 aa21.98■■□□□ 1.11
HMGA1-203ENST00000374116 PPARGC1BQ86YN6 1023 aaKnown RBP21.94■■□□□ 1.1
HMGA1-203ENST00000374116 PLEKHD1A6NEE1 506 aa21.92■■□□□ 1.1
HMGA1-203ENST00000374116 FAM69CQ0P6D2 419 aa21.92■■□□□ 1.1
HMGA1-203ENST00000374116 WDR7Q9Y4E6 1490 aa21.92■■□□□ 1.1
HMGA1-203ENST00000374116 CCDC18Q5T9S5 1454 aa21.9■■□□□ 1.1
HMGA1-203ENST00000374116 MAGI3Q5TCQ9 1506 aa21.89■■□□□ 1.1
HMGA1-203ENST00000374116 KIF13AQ9H1H9 1805 aa21.88■■□□□ 1.09
HMGA1-203ENST00000374116 ABCC10Q5T3U5 1492 aa21.87■■□□□ 1.09
HMGA1-203ENST00000374116 DIP2BQ9P265 1576 aa21.87■■□□□ 1.09
HMGA1-203ENST00000374116 CDK11AQ9UQ88 783 aaPredicted RBP21.85■■□□□ 1.09
HMGA1-203ENST00000374116 KANK4Q5T7N3 995 aaPredicted RBP21.84■■□□□ 1.09
HMGA1-203ENST00000374116 TIAM1Q13009 1591 aa21.82■■□□□ 1.08
HMGA1-203ENST00000374116 APLP2Q06481 763 aa21.82■■□□□ 1.08
HMGA1-203ENST00000374116 KIF14Q15058 1648 aa21.81■■□□□ 1.08
HMGA1-203ENST00000374116 CFAP43Q8NDM7 1665 aa21.81■■□□□ 1.08
HMGA1-203ENST00000374116 TSPOAP1O95153 1857 aa21.81■■□□□ 1.08
HMGA1-203ENST00000374116 MTUS2Q5JR59 1369 aa21.81■■□□□ 1.08
HMGA1-203ENST00000374116 TROQ12816 1431 aaPredicted RBP21.8■■□□□ 1.08
HMGA1-203ENST00000374116 ZEB1P37275 1124 aaPredicted RBP21.8■■□□□ 1.08
HMGA1-203ENST00000374116 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.76■■□□□ 1.072e-10■■□□□ 12.1
HMGA1-203ENST00000374116 TTC37Q6PGP7 1564 aa21.75■■□□□ 1.07
HMGA1-203ENST00000374116 GLI2P10070 1586 aa21.73■■□□□ 1.07
HMGA1-203ENST00000374116 MYT1Q01538 1121 aa21.73■■□□□ 1.07
HMGA1-203ENST00000374116 LRRC9Q6ZRR7 1453 aa21.73■■□□□ 1.07
HMGA1-203ENST00000374116 CD109Q6YHK3 1445 aa21.72■■□□□ 1.07
HMGA1-203ENST00000374116 MAP3K4Q9Y6R4 1608 aa21.72■■□□□ 1.07
HMGA1-203ENST00000374116 ABCA9Q8IUA7 1624 aa21.71■■□□□ 1.07
HMGA1-203ENST00000374116 MAP3K1Q13233 1512 aa21.71■■□□□ 1.07
HMGA1-203ENST00000374116 EHBP1L1Q8N3D4 1523 aa21.71■■□□□ 1.07
HMGA1-203ENST00000374116 PPRC1Q5VV67 1664 aaKnown RBP21.68■■□□□ 1.06
HMGA1-203ENST00000374116 NCOA2Q15596 1464 aa21.64■■□□□ 1.05
HMGA1-203ENST00000374116 SUPT6HQ7KZ85 1726 aaKnown RBP21.64■■□□□ 1.05
HMGA1-203ENST00000374116 MYO5CQ9NQX4 1742 aa21.62■■□□□ 1.05
HMGA1-203ENST00000374116 CDC42BPAQ5VT25 1732 aa21.61■■□□□ 1.05
HMGA1-203ENST00000374116 CCNB3Q8WWL7 1395 aa21.6■■□□□ 1.05
HMGA1-203ENST00000374116 PLCH2O75038 1416 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms