RNA–Protein interactions for RNA: ENST00000372064.8

VEGFA-204, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 2,909 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-204ENST00000372064 TDRD9Q8NDG6 1382 aaKnown RBP30.69■■■□□ 2.5
VEGFA-204ENST00000372064 CCNB3Q8WWL7 1395 aa30.69■■■□□ 2.5
VEGFA-204ENST00000372064 KIF21AQ7Z4S6 1674 aa30.68■■■□□ 2.5
VEGFA-204ENST00000372064 CFAP43Q8NDM7 1665 aa30.66■■■□□ 2.5
VEGFA-204ENST00000372064 DIEXFQ68CQ4 756 aaKnown RBP30.64■■■□□ 2.5
VEGFA-204ENST00000372064 PCF11O94913 1555 aaKnown RBP30.64■■■□□ 2.5
VEGFA-204ENST00000372064 LRRC9Q6ZRR7 1453 aa30.64■■■□□ 2.5
VEGFA-204ENST00000372064 CLSPNQ9HAW4 1339 aa30.64■■■□□ 2.5
VEGFA-204ENST00000372064 DHX57Q6P158 1386 aaKnown RBP30.61■■■□□ 2.49
VEGFA-204ENST00000372064 ZNF316A6NFI3 1004 aaPredicted RBP30.6■■■□□ 2.49
VEGFA-204ENST00000372064 GAPVD1Q14C86 1478 aa30.6■■■□□ 2.49
VEGFA-204ENST00000372064 FHOD3Q2V2M9 1422 aa30.6■■■□□ 2.49
VEGFA-204ENST00000372064 AQRO60306 1485 aaKnown RBP eCLIP30.57■■■□□ 2.481e-8■■■■■ 26.8
VEGFA-204ENST00000372064 FYCO1Q9BQS8 1478 aa30.56■■■□□ 2.48
VEGFA-204ENST00000372064 TARBP1Q13395 1621 aaKnown RBP30.53■■■□□ 2.48
VEGFA-204ENST00000372064 CASKIN1Q8WXD9 1431 aa30.52■■■□□ 2.48
VEGFA-204ENST00000372064 ATP1B4Q9UN42 357 aaPredicted RBP30.51■■■□□ 2.47
VEGFA-204ENST00000372064 ITGAEP38570 1179 aa30.46■■■□□ 2.47
VEGFA-204ENST00000372064 SAMD9Q5K651 1589 aa30.46■■■□□ 2.47
VEGFA-204ENST00000372064 PHLDB1Q86UU1 1377 aa30.46■■■□□ 2.47
VEGFA-204ENST00000372064 FMN1Q68DA7 1419 aa30.43■■■□□ 2.46
VEGFA-204ENST00000372064 SNAPC4Q5SXM2 1469 aa30.4■■■□□ 2.46
VEGFA-204ENST00000372064 MRC2Q9UBG0 1479 aa30.37■■■□□ 2.45
VEGFA-204ENST00000372064 PBRM1Q86U86 1689 aa30.34■■■□□ 2.45
VEGFA-204ENST00000372064 RAB3GAP2Q9H2M9 1393 aa30.3■■■□□ 2.44
VEGFA-204ENST00000372064 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.27■■■□□ 2.443e-7■■□□□ 14.3
VEGFA-204ENST00000372064 FAM50AQ14320 339 aaKnown RBP30.27■■■□□ 2.44
VEGFA-204ENST00000372064 THOC2Q8NI27 1593 aaKnown RBP30.26■■■□□ 2.44
VEGFA-204ENST00000372064 SETD5Q9C0A6 1442 aa30.25■■■□□ 2.43
VEGFA-204ENST00000372064 GRIN2BQ13224 1484 aa30.24■■■□□ 2.43
VEGFA-204ENST00000372064 LRRIQ1Q96JM4 1722 aa30.24■■■□□ 2.43
VEGFA-204ENST00000372064 ADAMTS12P58397 1594 aa30.23■■■□□ 2.43
VEGFA-204ENST00000372064 MAPKBP1O60336 1514 aa30.19■■■□□ 2.42
VEGFA-204ENST00000372064 SCAF1Q9H7N4 1312 aaKnown RBP30.19■■■□□ 2.42
VEGFA-204ENST00000372064 WDR62O43379 1518 aa30.16■■■□□ 2.42
VEGFA-204ENST00000372064 ACIN1Q9UKV3 1341 aaKnown RBP30.14■■■□□ 2.42
VEGFA-204ENST00000372064 MTUS2Q5JR59 1369 aa30.14■■■□□ 2.42
VEGFA-204ENST00000372064 ZNF608Q9ULD9 1512 aaPredicted RBP30.14■■■□□ 2.41
VEGFA-204ENST00000372064 FGD6Q6ZV73 1430 aa30.13■■■□□ 2.41
VEGFA-204ENST00000372064 IFT140Q96RY7 1462 aa30.13■■■□□ 2.41
VEGFA-204ENST00000372064 IQGAP2Q13576 1575 aa30.12■■■□□ 2.41
VEGFA-204ENST00000372064 EHBP1L1Q8N3D4 1523 aa30.07■■■□□ 2.4
VEGFA-204ENST00000372064 NEUROD1Q13562 356 aa30.06■■■□□ 2.4
VEGFA-204ENST00000372064 CENPBP07199 599 aaPredicted RBP30.05■■■□□ 2.4
VEGFA-204ENST00000372064 SUPT6HQ7KZ85 1726 aaKnown RBP30.04■■■□□ 2.4
VEGFA-204ENST00000372064 CCDC18Q5T9S5 1454 aa30.04■■■□□ 2.4
VEGFA-204ENST00000372064 NCOA2Q15596 1464 aa30.04■■■□□ 2.4
VEGFA-204ENST00000372064 MIER1Q8N108 512 aa30.01■■■□□ 2.39
VEGFA-204ENST00000372064 HECW1Q76N89 1606 aa30.01■■■□□ 2.39
VEGFA-204ENST00000372064 ARHGEF11O15085 1522 aa30.01■■■□□ 2.39
VEGFA-204ENST00000372064 UGGT2Q9NYU1 1516 aa29.99■■■□□ 2.39
VEGFA-204ENST00000372064 MYOM3Q5VTT5 1437 aa29.99■■■□□ 2.39
VEGFA-204ENST00000372064 ERCC6Q03468 1493 aa29.98■■■□□ 2.39
VEGFA-204ENST00000372064 MAGI3Q5TCQ9 1506 aa29.97■■■□□ 2.39
VEGFA-204ENST00000372064 EIF4G3O43432 1585 aaKnown RBP29.91■■■□□ 2.38
VEGFA-204ENST00000372064 PTPRKQ15262 1439 aa29.9■■■□□ 2.38
VEGFA-204ENST00000372064 EPRSP07814 1512 aaKnown RBP29.89■■■□□ 2.38
VEGFA-204ENST00000372064 HFM1A2PYH4 1435 aa29.89■■■□□ 2.38
VEGFA-204ENST00000372064 KIAA0586Q9BVV6 1533 aa29.88■■■□□ 2.37
VEGFA-204ENST00000372064 PTPN23Q9H3S7 1636 aa29.87■■■□□ 2.37
VEGFA-204ENST00000372064 GRIN2AQ12879 1464 aa29.84■■■□□ 2.37
VEGFA-204ENST00000372064 TCOF1Q13428 1488 aaKnown RBP29.83■■■□□ 2.37
VEGFA-204ENST00000372064 SIN3AQ96ST3 1273 aa29.83■■■□□ 2.37
VEGFA-204ENST00000372064 KIAA0556O60303 1618 aa29.82■■■□□ 2.36
VEGFA-204ENST00000372064 TIMELESSQ9UNS1 1208 aa29.82■■■□□ 2.36
VEGFA-204ENST00000372064 CDK13Q14004 1512 aaKnown RBP29.81■■■□□ 2.36
VEGFA-204ENST00000372064 DISP1Q96F81 1524 aa29.81■■■□□ 2.36
VEGFA-204ENST00000372064 ARID3CA6NKF2 412 aa29.8■■■□□ 2.36
VEGFA-204ENST00000372064 NAIPQ13075 1403 aa29.78■■■□□ 2.36
VEGFA-204ENST00000372064 UACAQ9BZF9 1416 aa29.76■■■□□ 2.35
VEGFA-204ENST00000372064 MAGI1Q96QZ7 1491 aaPredicted RBP29.76■■■□□ 2.35
VEGFA-204ENST00000372064 YTHDC1Q96MU7 727 aaKnown RBP29.72■■■□□ 2.35
VEGFA-204ENST00000372064 MIA2Q96PC5 1412 aa29.72■■■□□ 2.35
VEGFA-204ENST00000372064 CHMP7Q8WUX9 453 aaPredicted RBP29.71■■■□□ 2.35
VEGFA-204ENST00000372064 GTF3C3Q9Y5Q9 886 aa29.68■■■□□ 2.34
VEGFA-204ENST00000372064 SYNJ2O15056 1496 aa29.68■■■□□ 2.34
VEGFA-204ENST00000372064 GCC2Q8IWJ2 1684 aa29.67■■■□□ 2.34
VEGFA-204ENST00000372064 AKNAQ7Z591 1439 aa29.66■■■□□ 2.34
VEGFA-204ENST00000372064 RAPGEF6Q8TEU7 1601 aa29.66■■■□□ 2.34
VEGFA-204ENST00000372064 NUP153P49790 1475 aaKnown RBP29.65■■■□□ 2.34
VEGFA-204ENST00000372064 FBLN2P98095 1184 aa29.65■■■□□ 2.34
VEGFA-204ENST00000372064 CEP170Q5SW79 1584 aa29.64■■■□□ 2.34
VEGFA-204ENST00000372064 CHIC2Q9UKJ5 165 aa29.61■■■□□ 2.33
VEGFA-204ENST00000372064 RRP7BPQ9NSQ0 103 aa29.59■■■□□ 2.33
VEGFA-204ENST00000372064 PPP1R15AO75807 674 aaPredicted RBP29.59■■■□□ 2.33
VEGFA-204ENST00000372064 NUP160Q12769 1436 aa29.54■■■□□ 2.32
VEGFA-204ENST00000372064 JPH4Q96JJ6 628 aa29.5■■■□□ 2.31
VEGFA-204ENST00000372064 CDK11AQ9UQ88 783 aaPredicted RBP29.49■■■□□ 2.31
VEGFA-204ENST00000372064 TONSLQ96HA7 1378 aa29.49■■■□□ 2.31
VEGFA-204ENST00000372064 PLB1Q6P1J6 1458 aa29.48■■■□□ 2.31
VEGFA-204ENST00000372064 KDM6BO15054 1643 aa29.47■■■□□ 2.31
VEGFA-204ENST00000372064 DNMT1P26358 1616 aaKnown RBP29.46■■■□□ 2.31
VEGFA-204ENST00000372064 DENND4BO75064 1496 aaPredicted RBP29.45■■■□□ 2.31
VEGFA-204ENST00000372064 CARMIL2Q6F5E8 1435 aa29.45■■■□□ 2.3
VEGFA-204ENST00000372064 DAPK1P53355 1430 aa29.44■■■□□ 2.3
VEGFA-204ENST00000372064 ROCK1Q13464 1354 aa29.44■■■□□ 2.3
VEGFA-204ENST00000372064 PRG4Q92954 1404 aaPredicted RBP29.43■■■□□ 2.3
VEGFA-204ENST00000372064 KDM5BQ9UGL1 1544 aa29.43■■■□□ 2.3
VEGFA-204ENST00000372064 TROQ12816 1431 aaPredicted RBP29.42■■■□□ 2.3
VEGFA-204ENST00000372064 ZNF644Q9H582 1327 aaPredicted RBP29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms