RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 JPH4Q96JJ6 628 aa32.39■■■□□ 2.78
CKS1B-203ENST00000368439 KIAA0586Q9BVV6 1533 aa32.37■■■□□ 2.77
CKS1B-203ENST00000368439 PRG4Q92954 1404 aaPredicted RBP32.36■■■□□ 2.77
CKS1B-203ENST00000368439 RAPGEF2Q9Y4G8 1499 aa32.24■■■□□ 2.75
CKS1B-203ENST00000368439 IQGAP2Q13576 1575 aa32.15■■■□□ 2.74
CKS1B-203ENST00000368439 PRXQ9BXM0 1461 aa32.1■■■□□ 2.73
CKS1B-203ENST00000368439 TRHP20396 242 aaPredicted RBP32.07■■■□□ 2.72
CKS1B-203ENST00000368439 CTTNBP2Q8WZ74 1663 aa32.01■■■□□ 2.71
CKS1B-203ENST00000368439 DISP1Q96F81 1524 aa31.99■■■□□ 2.71
CKS1B-203ENST00000368439 UGGT2Q9NYU1 1516 aa31.99■■■□□ 2.71
CKS1B-203ENST00000368439 CARMIL2Q6F5E8 1435 aa31.98■■■□□ 2.71
CKS1B-203ENST00000368439 ADCY10Q96PN6 1610 aa31.97■■■□□ 2.71
CKS1B-203ENST00000368439 CSRNP3Q8WYN3 585 aa31.94■■■□□ 2.7
CKS1B-203ENST00000368439 TNIKQ9UKE5 1360 aa31.93■■■□□ 2.7
CKS1B-203ENST00000368439 EEA1Q15075 1411 aa31.92■■■□□ 2.7
CKS1B-203ENST00000368439 PTPRGP23470 1445 aa31.92■■■□□ 2.7
CKS1B-203ENST00000368439 CHIC1Q5VXU3 224 aa31.91■■■□□ 2.7
CKS1B-203ENST00000368439 KIAA0556O60303 1618 aa31.88■■■□□ 2.69
CKS1B-203ENST00000368439 MAPKBP1O60336 1514 aa31.8■■■□□ 2.68
CKS1B-203ENST00000368439 KIF13AQ9H1H9 1805 aa31.8■■■□□ 2.68
CKS1B-203ENST00000368439 TTBK1Q5TCY1 1321 aaPredicted RBP31.78■■■□□ 2.68
CKS1B-203ENST00000368439 NPM1P06748 294 aaKnown RBP eCLIP31.76■■■□□ 2.67
CKS1B-203ENST00000368439 UHRF1BP1LA0JNW5 1464 aa31.74■■■□□ 2.67
CKS1B-203ENST00000368439 FAM9AQ8IZU1 332 aaPredicted RBP31.73■■■□□ 2.67
CKS1B-203ENST00000368439 GOLGA3Q08378 1498 aa31.72■■■□□ 2.67
CKS1B-203ENST00000368439 UACAQ9BZF9 1416 aa31.72■■■□□ 2.67
CKS1B-203ENST00000368439 ABCC2Q92887 1545 aa31.7■■■□□ 2.67
CKS1B-203ENST00000368439 KIF21BO75037 1637 aa31.68■■■□□ 2.66
CKS1B-203ENST00000368439 ABCC10Q5T3U5 1492 aa31.68■■■□□ 2.66
CKS1B-203ENST00000368439 DIP2BQ9P265 1576 aa31.65■■■□□ 2.66
CKS1B-203ENST00000368439 SAMD9Q5K651 1589 aa31.6■■■□□ 2.65
CKS1B-203ENST00000368439 KDM5BQ9UGL1 1544 aa31.59■■■□□ 2.65
CKS1B-203ENST00000368439 PLB1Q6P1J6 1458 aa31.57■■■□□ 2.64
CKS1B-203ENST00000368439 FAM69CQ0P6D2 419 aa31.56■■■□□ 2.64
CKS1B-203ENST00000368439 ABCA8O94911 1581 aa31.56■■■□□ 2.64
CKS1B-203ENST00000368439 ZCCHC11Q5TAX3 1644 aaKnown RBP31.54■■■□□ 2.64
CKS1B-203ENST00000368439 ASXL2Q76L83 1435 aa31.52■■■□□ 2.64
CKS1B-203ENST00000368439 P3H3Q8IVL6 736 aa31.47■■■□□ 2.63
CKS1B-203ENST00000368439 GLI2P10070 1586 aa31.43■■■□□ 2.62
CKS1B-203ENST00000368439 TSPOAP1O95153 1857 aa31.39■■■□□ 2.62
CKS1B-203ENST00000368439 EPRSP07814 1512 aaKnown RBP31.36■■■□□ 2.61
CKS1B-203ENST00000368439 RANGAP1P46060 587 aaPredicted RBP31.35■■■□□ 2.61
CKS1B-203ENST00000368439 EFCAB5A4FU69 1503 aa31.34■■■□□ 2.61
CKS1B-203ENST00000368439 FHOD3Q2V2M9 1422 aa31.33■■■□□ 2.61
CKS1B-203ENST00000368439 PPRC1Q5VV67 1664 aaKnown RBP31.32■■■□□ 2.6
CKS1B-203ENST00000368439 EHMT2Q96KQ7 1210 aa31.32■■■□□ 2.6
CKS1B-203ENST00000368439 WDR7Q9Y4E6 1490 aa31.32■■■□□ 2.6
CKS1B-203ENST00000368439 RAPGEF6Q8TEU7 1601 aa31.31■■■□□ 2.6
CKS1B-203ENST00000368439 UBTFP17480 764 aaKnown RBP31.29■■■□□ 2.6
CKS1B-203ENST00000368439 MAP3K4Q9Y6R4 1608 aa31.28■■■□□ 2.6
CKS1B-203ENST00000368439 ATP10BO94823 1461 aa31.27■■■□□ 2.6
CKS1B-203ENST00000368439 NUP153P49790 1475 aaKnown RBP31.21■■■□□ 2.59
CKS1B-203ENST00000368439 ARID3CA6NKF2 412 aa31.18■■■□□ 2.58
CKS1B-203ENST00000368439 KDM6BO15054 1643 aa31.17■■■□□ 2.58
CKS1B-203ENST00000368439 ARHGAP35Q9NRY4 1499 aa31.17■■■□□ 2.58
CKS1B-203ENST00000368439 CFAP43Q8NDM7 1665 aa31.13■■■□□ 2.57
CKS1B-203ENST00000368439 KCNH8Q96L42 1107 aa31.11■■■□□ 2.57
CKS1B-203ENST00000368439 TEX14Q8IWB6 1497 aa31.06■■■□□ 2.56
CKS1B-203ENST00000368439 MAGI3Q5TCQ9 1506 aa31.04■■■□□ 2.56
CKS1B-203ENST00000368439 CD109Q6YHK3 1445 aa31.04■■■□□ 2.56
CKS1B-203ENST00000368439 FMN1Q68DA7 1419 aa31.02■■■□□ 2.56
CKS1B-203ENST00000368439 ABCA9Q8IUA7 1624 aa31.02■■■□□ 2.56
CKS1B-203ENST00000368439 COL17A1Q9UMD9 1497 aaPredicted RBP31.01■■■□□ 2.56
CKS1B-203ENST00000368439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.99■■■□□ 2.55
CKS1B-203ENST00000368439 HNRNPUL2Q1KMD3 747 aaKnown RBP30.99■■■□□ 2.55
CKS1B-203ENST00000368439 CDK13Q14004 1512 aaKnown RBP30.94■■■□□ 2.54
CKS1B-203ENST00000368439 HECW1Q76N89 1606 aa30.94■■■□□ 2.54
CKS1B-203ENST00000368439 PLEKHD1A6NEE1 506 aa30.89■■■□□ 2.54
CKS1B-203ENST00000368439 LRRIQ1Q96JM4 1722 aa30.88■■■□□ 2.53
CKS1B-203ENST00000368439 CLIP1P30622 1438 aa30.83■■■□□ 2.53
CKS1B-203ENST00000368439 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.81■■■□□ 2.522e-6■■□□□ 13.9
CKS1B-203ENST00000368439 PCF11O94913 1555 aaKnown RBP30.8■■■□□ 2.52
CKS1B-203ENST00000368439 ATP1B4Q9UN42 357 aaPredicted RBP30.79■■■□□ 2.52
CKS1B-203ENST00000368439 ARAP3Q8WWN8 1544 aa30.78■■■□□ 2.52
CKS1B-203ENST00000368439 CASKIN1Q8WXD9 1431 aa30.78■■■□□ 2.52
CKS1B-203ENST00000368439 TTC37Q6PGP7 1564 aa30.78■■■□□ 2.52
CKS1B-203ENST00000368439 NEO1Q92859 1461 aa30.75■■■□□ 2.51
CKS1B-203ENST00000368439 PHLDB1Q86UU1 1377 aa30.74■■■□□ 2.51
CKS1B-203ENST00000368439 FYCO1Q9BQS8 1478 aa30.69■■■□□ 2.5
CKS1B-203ENST00000368439 CDK11AQ9UQ88 783 aaPredicted RBP30.67■■■□□ 2.5
CKS1B-203ENST00000368439 CCDC18Q5T9S5 1454 aa30.67■■■□□ 2.5
CKS1B-203ENST00000368439 KIF14Q15058 1648 aa30.66■■■□□ 2.5
CKS1B-203ENST00000368439 TROQ12816 1431 aaPredicted RBP30.66■■■□□ 2.5
CKS1B-203ENST00000368439 CEP162Q5TB80 1403 aa30.64■■■□□ 2.5
CKS1B-203ENST00000368439 AEBP2Q6ZN18 517 aaPredicted RBP30.63■■■□□ 2.49
CKS1B-203ENST00000368439 FANCAO15360 1455 aa30.62■■■□□ 2.49
CKS1B-203ENST00000368439 CFAP74Q9C0B2 1584 aa30.62■■■□□ 2.49
CKS1B-203ENST00000368439 KDM4FA0A1W2PPD8 638 aa30.61■■■□□ 2.49
CKS1B-203ENST00000368439 FRMPD1Q5SYB0 1578 aa30.61■■■□□ 2.49
CKS1B-203ENST00000368439 PLCH2O75038 1416 aa30.6■■■□□ 2.49
CKS1B-203ENST00000368439 MYO5CQ9NQX4 1742 aa30.59■■■□□ 2.49
CKS1B-203ENST00000368439 AKNAQ7Z591 1439 aa30.59■■■□□ 2.49
CKS1B-203ENST00000368439 LOC105371045A0A1W2PR82 267 aa30.59■■■□□ 2.49
CKS1B-203ENST00000368439 RAPGEF3O95398 923 aa30.57■■■□□ 2.48
CKS1B-203ENST00000368439 RICTORQ6R327 1708 aa30.55■■■□□ 2.48
CKS1B-203ENST00000368439 DENND4BO75064 1496 aaPredicted RBP30.5■■■□□ 2.47
CKS1B-203ENST00000368439 ADGRL1O94910 1474 aa30.5■■■□□ 2.47
CKS1B-203ENST00000368439 CDC42BPBQ9Y5S2 1711 aa30.47■■■□□ 2.47
CKS1B-203ENST00000368439 EFCAB2Q5VUJ9 269 aa30.42■■■□□ 2.46
CKS1B-203ENST00000368439 PREX2Q70Z35 1606 aa30.42■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms