RNA–Protein interactions for RNA: ENST00000361901.6

CALD1-202, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,114 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-202ENST00000361901 CHIC2Q9UKJ5 165 aa13.3□□□□□ -0.28
CALD1-202ENST00000361901 POLA1P09884 1462 aaPredicted RBP13.3□□□□□ -0.28
CALD1-202ENST00000361901 MTUS2Q5JR59 1369 aa13.3□□□□□ -0.28
CALD1-202ENST00000361901 FHOD3Q2V2M9 1422 aa13.29□□□□□ -0.28
CALD1-202ENST00000361901 TRIM52Q96A61 297 aa13.28□□□□□ -0.28
CALD1-202ENST00000361901 PRXQ9BXM0 1461 aa13.26□□□□□ -0.29
CALD1-202ENST00000361901 GAPVD1Q14C86 1478 aa13.25□□□□□ -0.29
CALD1-202ENST00000361901 MYT1LQ9UL68 1186 aa13.25□□□□□ -0.29
CALD1-202ENST00000361901 ANP32EQ9BTT0 268 aa13.24□□□□□ -0.29
CALD1-202ENST00000361901 KIF21BO75037 1637 aa13.24□□□□□ -0.29
CALD1-202ENST00000361901 DIEXFQ68CQ4 756 aaKnown RBP13.21□□□□□ -0.29
CALD1-202ENST00000361901 URB2Q14146 1524 aaKnown RBP13.21□□□□□ -0.3
CALD1-202ENST00000361901 ARAP1Q96P48 1450 aa13.21□□□□□ -0.3
CALD1-202ENST00000361901 CDK11AQ9UQ88 783 aaPredicted RBP13.2□□□□□ -0.3
CALD1-202ENST00000361901 DNMBPQ6XZF7 1577 aa13.19□□□□□ -0.3
CALD1-202ENST00000361901 BIVM-ERCC5R4GMW8 1640 aa13.19□□□□□ -0.3
CALD1-202ENST00000361901 LAMC3Q9Y6N6 1575 aa13.18□□□□□ -0.3
CALD1-202ENST00000361901 RRP7BPQ9NSQ0 103 aa13.18□□□□□ -0.3
CALD1-202ENST00000361901 FHAD1B1AJZ9 1412 aa13.18□□□□□ -0.3
CALD1-202ENST00000361901 ARHGAP35Q9NRY4 1499 aa13.16□□□□□ -0.3
CALD1-202ENST00000361901 CCNB3Q8WWL7 1395 aa13.15□□□□□ -0.3
CALD1-202ENST00000361901 ERICH3Q5RHP9 1530 aa13.14□□□□□ -0.31
CALD1-202ENST00000361901 KCNH8Q96L42 1107 aa13.14□□□□□ -0.31
CALD1-202ENST00000361901 MRC2Q9UBG0 1479 aa13.13□□□□□ -0.31
CALD1-202ENST00000361901 ABCA10Q8WWZ4 1543 aa13.11□□□□□ -0.31
CALD1-202ENST00000361901 ZNF316A6NFI3 1004 aaPredicted RBP13.11□□□□□ -0.31
CALD1-202ENST00000361901 JPH4Q96JJ6 628 aa13.11□□□□□ -0.31
CALD1-202ENST00000361901 CNGB1Q14028 1251 aaPredicted RBP13.1□□□□□ -0.31
CALD1-202ENST00000361901 ZNF608Q9ULD9 1512 aaPredicted RBP13.08□□□□□ -0.32
CALD1-202ENST00000361901 FMN1Q68DA7 1419 aa13.08□□□□□ -0.32
CALD1-202ENST00000361901 PLEKHD1A6NEE1 506 aa13.08□□□□□ -0.32
CALD1-202ENST00000361901 POLR3GLQ9BT43 218 aa13.07□□□□□ -0.32
CALD1-202ENST00000361901 SIN3AQ96ST3 1273 aa13.06□□□□□ -0.32
CALD1-202ENST00000361901 ZNF326Q5BKZ1 582 aaKnown RBP13.06□□□□□ -0.32
CALD1-202ENST00000361901 HIRIP3Q9BW71 556 aaPredicted RBP13.05□□□□□ -0.32
CALD1-202ENST00000361901 CFDP1Q9UEE9 299 aaPredicted RBP13.04□□□□□ -0.32
CALD1-202ENST00000361901 GRIN2BQ13224 1484 aa13.04□□□□□ -0.32
CALD1-202ENST00000361901 KIF21AQ7Z4S6 1674 aa13.03□□□□□ -0.32
CALD1-202ENST00000361901 PHLDB1Q86UU1 1377 aa13.01□□□□□ -0.33
CALD1-202ENST00000361901 SNAPC4Q5SXM2 1469 aa13□□□□□ -0.33
CALD1-202ENST00000361901 IFT140Q96RY7 1462 aa13□□□□□ -0.33
CALD1-202ENST00000361901 RAB3GAP2Q9H2M9 1393 aa12.98□□□□□ -0.33
CALD1-202ENST00000361901 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.98□□□□□ -0.334e-7■■■■□ 20
CALD1-202ENST00000361901 CARMIL2Q6F5E8 1435 aa12.96□□□□□ -0.33
CALD1-202ENST00000361901 TSPY4P0CV99 314 aa12.96□□□□□ -0.33
CALD1-202ENST00000361901 TSPY10P0CW01 314 aa12.96□□□□□ -0.33
CALD1-202ENST00000361901 LRRC9Q6ZRR7 1453 aa12.95□□□□□ -0.34
CALD1-202ENST00000361901 FOXD1Q16676 465 aa12.94□□□□□ -0.34
CALD1-202ENST00000361901 TONSLQ96HA7 1378 aa12.94□□□□□ -0.34
CALD1-202ENST00000361901 NPM1P06748 294 aaKnown RBP eCLIP12.94□□□□□ -0.34
CALD1-202ENST00000361901 PRDM2Q13029 1718 aa12.93□□□□□ -0.34
CALD1-202ENST00000361901 SLC4A1APQ9BWU0 796 aaKnown RBP12.93□□□□□ -0.34
CALD1-202ENST00000361901 SETD5Q9C0A6 1442 aa12.93□□□□□ -0.34
CALD1-202ENST00000361901 ZNF644Q9H582 1327 aaPredicted RBP12.93□□□□□ -0.34
CALD1-202ENST00000361901 CASKIN1Q8WXD9 1431 aa12.92□□□□□ -0.34
CALD1-202ENST00000361901 DDX10Q13206 875 aaKnown RBP12.89□□□□□ -0.35
CALD1-202ENST00000361901 DHX57Q6P158 1386 aaKnown RBP12.88□□□□□ -0.35
CALD1-202ENST00000361901 CUL7Q14999 1698 aa12.88□□□□□ -0.35
CALD1-202ENST00000361901 PTPRGP23470 1445 aa12.87□□□□□ -0.35
CALD1-202ENST00000361901 MIER1Q8N108 512 aa12.87□□□□□ -0.35
CALD1-202ENST00000361901 PCF11O94913 1555 aaKnown RBP12.87□□□□□ -0.35
CALD1-202ENST00000361901 HNRNPMP52272 730 aaKnown RBP eCLIP12.86□□□□□ -0.35
CALD1-202ENST00000361901 BCANQ96GW7 911 aa12.86□□□□□ -0.35
CALD1-202ENST00000361901 TIAM1Q13009 1591 aa12.86□□□□□ -0.35
CALD1-202ENST00000361901 KDM2AQ9Y2K7 1162 aa12.85□□□□□ -0.35
CALD1-202ENST00000361901 FYCO1Q9BQS8 1478 aa12.85□□□□□ -0.35
CALD1-202ENST00000361901 EFCAB5A4FU69 1503 aa12.84□□□□□ -0.35
CALD1-202ENST00000361901 CDK13Q14004 1512 aaKnown RBP12.83□□□□□ -0.36
CALD1-202ENST00000361901 GRIN2AQ12879 1464 aa12.83□□□□□ -0.36
CALD1-202ENST00000361901 NCOA2Q15596 1464 aa12.83□□□□□ -0.36
CALD1-202ENST00000361901 FGD6Q6ZV73 1430 aa12.83□□□□□ -0.36
CALD1-202ENST00000361901 PRG4Q92954 1404 aaPredicted RBP12.83□□□□□ -0.36
CALD1-202ENST00000361901 IQGAP2Q13576 1575 aa12.83□□□□□ -0.36
CALD1-202ENST00000361901 RRBP1Q9P2E9 1410 aaKnown RBP12.82□□□□□ -0.36
CALD1-202ENST00000361901 KIAA0586Q9BVV6 1533 aa12.82□□□□□ -0.36
CALD1-202ENST00000361901 CCDC18Q5T9S5 1454 aa12.81□□□□□ -0.36
CALD1-202ENST00000361901 RGL3Q3MIN7 710 aa12.8□□□□□ -0.36
CALD1-202ENST00000361901 SYNJ2O15056 1496 aa12.79□□□□□ -0.36
CALD1-202ENST00000361901 MYOM3Q5VTT5 1437 aa12.79□□□□□ -0.36
CALD1-202ENST00000361901 PLB1Q6P1J6 1458 aa12.79□□□□□ -0.36
CALD1-202ENST00000361901 CLSPNQ9HAW4 1339 aa12.79□□□□□ -0.36
CALD1-202ENST00000361901 NEFLP07196 543 aa12.78□□□□□ -0.36
CALD1-202ENST00000361901 SENP3Q9H4L4 574 aaPredicted RBP12.78□□□□□ -0.36
CALD1-202ENST00000361901 MPHOSPH9Q99550 1183 aa12.77□□□□□ -0.36
CALD1-202ENST00000361901 ANO8Q9HCE9 1232 aaPredicted RBP12.77□□□□□ -0.36
CALD1-202ENST00000361901 TARBP1Q13395 1621 aaKnown RBP12.77□□□□□ -0.37
CALD1-202ENST00000361901 EIF5BO60841 1220 aaKnown RBP12.77□□□□□ -0.37
CALD1-202ENST00000361901 ABCA5Q8WWZ7 1642 aa12.77□□□□□ -0.37
CALD1-202ENST00000361901 WDR62O43379 1518 aa12.76□□□□□ -0.37
CALD1-202ENST00000361901 EPRSP07814 1512 aaKnown RBP12.76□□□□□ -0.37
CALD1-202ENST00000361901 OSCARQ8IYS5 282 aa12.75□□□□□ -0.37
CALD1-202ENST00000361901 MAGI1Q96QZ7 1491 aaPredicted RBP12.75□□□□□ -0.37
CALD1-202ENST00000361901 CHGAP10645 457 aaKnown RBP12.75□□□□□ -0.37
CALD1-202ENST00000361901 EIF4G3O43432 1585 aaKnown RBP12.75□□□□□ -0.37
CALD1-202ENST00000361901 TSHZ2Q9NRE2 1034 aa12.74□□□□□ -0.37
CALD1-202ENST00000361901 PKD2Q13563 968 aa12.74□□□□□ -0.37
CALD1-202ENST00000361901 ANP32CO43423 234 aa12.73□□□□□ -0.37
CALD1-202ENST00000361901 ADAMTS12P58397 1594 aa12.73□□□□□ -0.37
CALD1-202ENST00000361901 CTTNBP2Q8WZ74 1663 aa12.72□□□□□ -0.37
CALD1-202ENST00000361901 CYB5RLQ6IPT4 315 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms