RNA–Protein interactions for RNA: ENST00000361901.6

CALD1-202, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,114 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-202ENST00000361901 NISCHQ9Y2I1 1504 aa18.55■□□□□ 0.56
CALD1-202ENST00000361901 DCAF8L2P0C7V8 631 aa16.88■□□□□ 0.29
CALD1-202ENST00000361901 SHROOM4Q9ULL8 1493 aa16.43■□□□□ 0.22
CALD1-202ENST00000361901 SUPT5HO00267 1087 aaKnown RBP16.1■□□□□ 0.17
CALD1-202ENST00000361901 ABCC9O60706 1549 aa15.63■□□□□ 0.09
CALD1-202ENST00000361901 CCDC180Q9P1Z9 1646 aa15.59■□□□□ 0.09
CALD1-202ENST00000361901 ZCCHC6Q5VYS8 1495 aaKnown RBP15.48■□□□□ 0.07
CALD1-202ENST00000361901 PELP1Q8IZL8 1130 aaKnown RBP15.21■□□□□ 0.02
CALD1-202ENST00000361901 EHMT2Q96KQ7 1210 aa15.19■□□□□ 0.02
CALD1-202ENST00000361901 PABPN1Q86U42 306 aaKnown RBP eCLIP15.16■□□□□ 0.02
CALD1-202ENST00000361901 SCRIBQ14160 1630 aa15.11■□□□□ 0.01
CALD1-202ENST00000361901 FAM9AQ8IZU1 332 aaPredicted RBP15.04■□□□□ -0
CALD1-202ENST00000361901 CHIC1Q5VXU3 224 aa14.95□□□□□ -0.02
CALD1-202ENST00000361901 MYT1Q01538 1121 aa14.9□□□□□ -0.02
CALD1-202ENST00000361901 TRIM41Q8WV44 630 aa14.89□□□□□ -0.03
CALD1-202ENST00000361901 DCAF1Q9Y4B6 1507 aa14.88□□□□□ -0.03
CALD1-202ENST00000361901 NACADO15069 1562 aa14.79□□□□□ -0.04
CALD1-202ENST00000361901 RB1CC1Q8TDY2 1594 aa14.76□□□□□ -0.05
CALD1-202ENST00000361901 LOC105371045A0A1W2PR82 267 aa14.76□□□□□ -0.05
CALD1-202ENST00000361901 CECR2Q9BXF3 1484 aa14.67□□□□□ -0.06
CALD1-202ENST00000361901 RSF1Q96T23 1441 aaPredicted RBP14.67□□□□□ -0.06
CALD1-202ENST00000361901 RANGAP1P46060 587 aaPredicted RBP14.56□□□□□ -0.08
CALD1-202ENST00000361901 MYO15BQ96JP2 1530 aa14.54□□□□□ -0.08
CALD1-202ENST00000361901 TTBK1Q5TCY1 1321 aaPredicted RBP14.54□□□□□ -0.08
CALD1-202ENST00000361901 PCGF6Q9BYE7 350 aa14.52□□□□□ -0.08
CALD1-202ENST00000361901 MROH2BQ7Z745 1585 aa14.48□□□□□ -0.09
CALD1-202ENST00000361901 PPARGC1BQ86YN6 1023 aaKnown RBP14.46□□□□□ -0.09
CALD1-202ENST00000361901 HRCP23327 699 aa14.44□□□□□ -0.1
CALD1-202ENST00000361901 UBTFP17480 764 aaKnown RBP14.43□□□□□ -0.1
CALD1-202ENST00000361901 WIZO95785 1651 aa14.33□□□□□ -0.12
CALD1-202ENST00000361901 BAZ1AQ9NRL2 1556 aaPredicted RBP14.33□□□□□ -0.12
CALD1-202ENST00000361901 APLP2Q06481 763 aa14.17□□□□□ -0.14
CALD1-202ENST00000361901 BAZ1BQ9UIG0 1483 aaKnown RBP14.17□□□□□ -0.14
CALD1-202ENST00000361901 CCDC88BA6NC98 1476 aa14.16□□□□□ -0.14
CALD1-202ENST00000361901 SMARCA4P51532 1647 aa14.14□□□□□ -0.15
CALD1-202ENST00000361901 ATP1B4Q9UN42 357 aaPredicted RBP14.11□□□□□ -0.15
CALD1-202ENST00000361901 CSRNP3Q8WYN3 585 aa14.1□□□□□ -0.15
CALD1-202ENST00000361901 TRIM26Q12899 539 aaPredicted RBP14.07□□□□□ -0.16
CALD1-202ENST00000361901 ABCC8Q09428 1581 aa14.06□□□□□ -0.16
CALD1-202ENST00000361901 BICRAQ9NZM4 1560 aa14.06□□□□□ -0.16
CALD1-202ENST00000361901 UNC13AQ9UPW8 1703 aa14.05□□□□□ -0.16
CALD1-202ENST00000361901 ATAD2BQ9ULI0 1458 aa14.04□□□□□ -0.16
CALD1-202ENST00000361901 TOP2AP11388 1531 aaKnown RBP14.03□□□□□ -0.16
CALD1-202ENST00000361901 WRNQ14191 1432 aaPredicted RBP eCLIP13.98□□□□□ -0.17
CALD1-202ENST00000361901 SCAF1Q9H7N4 1312 aaKnown RBP13.97□□□□□ -0.17
CALD1-202ENST00000361901 SOGA1O94964 1423 aa13.95□□□□□ -0.18
CALD1-202ENST00000361901 SMARCA2P51531 1590 aa13.95□□□□□ -0.18
CALD1-202ENST00000361901 CCER1Q8TC90 406 aaPredicted RBP13.9□□□□□ -0.18
CALD1-202ENST00000361901 P3H3Q8IVL6 736 aa13.88□□□□□ -0.19
CALD1-202ENST00000361901 EIF4G1Q04637 1599 aaKnown RBP13.87□□□□□ -0.19
CALD1-202ENST00000361901 HNRNPUL2Q1KMD3 747 aaKnown RBP13.87□□□□□ -0.19
CALD1-202ENST00000361901 ITGAEP38570 1179 aa13.84□□□□□ -0.19
CALD1-202ENST00000361901 RUSC2Q8N2Y8 1516 aa13.82□□□□□ -0.2
CALD1-202ENST00000361901 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.82□□□□□ -0.2
CALD1-202ENST00000361901 CENPBP07199 599 aaPredicted RBP13.8□□□□□ -0.2
CALD1-202ENST00000361901 DNAJC5BQ9UF47 199 aa13.79□□□□□ -0.2
CALD1-202ENST00000361901 FBLN2P98095 1184 aa13.76□□□□□ -0.21
CALD1-202ENST00000361901 NCAPD3P42695 1498 aa13.75□□□□□ -0.21
CALD1-202ENST00000361901 CEP162Q5TB80 1403 aa13.73□□□□□ -0.21
CALD1-202ENST00000361901 CADPSQ9ULU8 1353 aa13.72□□□□□ -0.21
CALD1-202ENST00000361901 GTF3C3Q9Y5Q9 886 aa13.71□□□□□ -0.22
CALD1-202ENST00000361901 ARID3CA6NKF2 412 aa13.7□□□□□ -0.22
CALD1-202ENST00000361901 EEA1Q15075 1411 aa13.68□□□□□ -0.22
CALD1-202ENST00000361901 GOLGA3Q08378 1498 aa13.68□□□□□ -0.22
CALD1-202ENST00000361901 BCL11AQ9H165 835 aa13.67□□□□□ -0.22
CALD1-202ENST00000361901 CC2D2AQ9P2K1 1620 aa13.67□□□□□ -0.22
CALD1-202ENST00000361901 CLIP1P30622 1438 aa13.67□□□□□ -0.22
CALD1-202ENST00000361901 TNIKQ9UKE5 1360 aa13.65□□□□□ -0.22
CALD1-202ENST00000361901 KIF27Q86VH2 1401 aa13.65□□□□□ -0.22
CALD1-202ENST00000361901 ZEB1P37275 1124 aaPredicted RBP13.64□□□□□ -0.23
CALD1-202ENST00000361901 CUX2O14529 1486 aa13.64□□□□□ -0.23
CALD1-202ENST00000361901 CEP164Q9UPV0 1460 aa13.62□□□□□ -0.23
CALD1-202ENST00000361901 NESP48681 1621 aa13.61□□□□□ -0.23
CALD1-202ENST00000361901 ACIN1Q9UKV3 1341 aaKnown RBP13.6□□□□□ -0.23
CALD1-202ENST00000361901 SYNJ1O43426 1573 aa13.6□□□□□ -0.23
CALD1-202ENST00000361901 FAM50AQ14320 339 aaKnown RBP13.59□□□□□ -0.23
CALD1-202ENST00000361901 ERICH6Q7L0X2 663 aa13.59□□□□□ -0.23
CALD1-202ENST00000361901 PEG3Q9GZU2 1588 aa13.58□□□□□ -0.23
CALD1-202ENST00000361901 TDRD9Q8NDG6 1382 aaKnown RBP13.58□□□□□ -0.24
CALD1-202ENST00000361901 RAPGEF2Q9Y4G8 1499 aa13.57□□□□□ -0.24
CALD1-202ENST00000361901 FANCD2Q9BXW9 1451 aa13.57□□□□□ -0.24
CALD1-202ENST00000361901 HMGXB3Q12766 1538 aa13.55□□□□□ -0.24
CALD1-202ENST00000361901 CFTRP13569 1480 aa13.55□□□□□ -0.24
CALD1-202ENST00000361901 CARMIL1Q5VZK9 1371 aa13.54□□□□□ -0.24
CALD1-202ENST00000361901 PDS5BQ9NTI5 1447 aa13.5□□□□□ -0.25
CALD1-202ENST00000361901 ERCC6Q03468 1493 aa13.5□□□□□ -0.25
CALD1-202ENST00000361901 PRKCSHP14314 528 aaPredicted RBP13.5□□□□□ -0.25
CALD1-202ENST00000361901 NEUROD1Q13562 356 aa13.49□□□□□ -0.25
CALD1-202ENST00000361901 RAD54L2Q9Y4B4 1467 aa13.49□□□□□ -0.25
CALD1-202ENST00000361901 FGD5Q6ZNL6 1462 aa13.47□□□□□ -0.25
CALD1-202ENST00000361901 YTHDC1Q96MU7 727 aaKnown RBP13.47□□□□□ -0.25
CALD1-202ENST00000361901 CUX1P39880 1505 aa13.46□□□□□ -0.25
CALD1-202ENST00000361901 CHMP7Q8WUX9 453 aaPredicted RBP13.45□□□□□ -0.26
CALD1-202ENST00000361901 KANK4Q5T7N3 995 aaPredicted RBP13.43□□□□□ -0.26
CALD1-202ENST00000361901 IGF1RP08069 1367 aa13.42□□□□□ -0.26
CALD1-202ENST00000361901 TOP2BQ02880 1626 aa13.39□□□□□ -0.27
CALD1-202ENST00000361901 VPS8Q8N3P4 1428 aa13.37□□□□□ -0.27
CALD1-202ENST00000361901 ZNF777Q9ULD5 760 aaPredicted RBP13.32□□□□□ -0.28
CALD1-202ENST00000361901 TOPBP1Q92547 1522 aa13.31□□□□□ -0.28
CALD1-202ENST00000361901 AQRO60306 1485 aaKnown RBP eCLIP13.3□□□□□ -0.285e-16■■□□□ 11.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms