RNA–Protein interactions for RNA: ENST00000354828.7

GABPA-201, Transcript of GA binding protein transcription factor subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABPA, Length 5,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPA-201ENST00000354828 CLSPNQ9HAW4 1339 aa13.46□□□□□ -0.26
GABPA-201ENST00000354828 GOLGA3Q08378 1498 aa13.45□□□□□ -0.26
GABPA-201ENST00000354828 MLECQ14165 292 aa13.44□□□□□ -0.26
GABPA-201ENST00000354828 SOGA1O94964 1423 aa13.44□□□□□ -0.26
GABPA-201ENST00000354828 TDRD9Q8NDG6 1382 aaKnown RBP13.44□□□□□ -0.26
GABPA-201ENST00000354828 NCAPD3P42695 1498 aa13.43□□□□□ -0.26
GABPA-201ENST00000354828 DIEXFQ68CQ4 756 aaKnown RBP13.43□□□□□ -0.26
GABPA-201ENST00000354828 A0A0G2JS52 829 aa13.42□□□□□ -0.26
GABPA-201ENST00000354828 CARMIL1Q5VZK9 1371 aa13.42□□□□□ -0.26
GABPA-201ENST00000354828 ZBTB47Q9UFB7 747 aaPredicted RBP13.41□□□□□ -0.26
GABPA-201ENST00000354828 CEP164Q9UPV0 1460 aa13.41□□□□□ -0.26
GABPA-201ENST00000354828 BCL11AQ9H165 835 aa13.4□□□□□ -0.26
GABPA-201ENST00000354828 ZBTB7CA1YPR0 619 aa13.39□□□□□ -0.27
GABPA-201ENST00000354828 HAP1P54257 671 aaPredicted RBP13.38□□□□□ -0.27
GABPA-201ENST00000354828 CANXP27824 592 aaKnown RBP13.37□□□□□ -0.27
GABPA-201ENST00000354828 ABCC8Q09428 1581 aa13.37□□□□□ -0.27
GABPA-201ENST00000354828 FANCD2Q9BXW9 1451 aa13.37□□□□□ -0.27
GABPA-201ENST00000354828 CARMIL2Q6F5E8 1435 aa13.35□□□□□ -0.27
GABPA-201ENST00000354828 RGL3Q3MIN7 710 aa13.35□□□□□ -0.27
GABPA-201ENST00000354828 CEP162Q5TB80 1403 aa13.33□□□□□ -0.28
GABPA-201ENST00000354828 TNIKQ9UKE5 1360 aa13.32□□□□□ -0.28
GABPA-201ENST00000354828 CYB5RLQ6IPT4 315 aa13.32□□□□□ -0.28
GABPA-201ENST00000354828 OSCARQ8IYS5 282 aa13.32□□□□□ -0.28
GABPA-201ENST00000354828 CCNB3Q8WWL7 1395 aa13.3□□□□□ -0.28
GABPA-201ENST00000354828 CC2D2AQ9P2K1 1620 aa13.27□□□□□ -0.28
GABPA-201ENST00000354828 GGT6Q6P531 493 aa13.26□□□□□ -0.29
GABPA-201ENST00000354828 LMOD2Q6P5Q4 547 aa13.26□□□□□ -0.29
GABPA-201ENST00000354828 ZNF316A6NFI3 1004 aaPredicted RBP13.26□□□□□ -0.29
GABPA-201ENST00000354828 TMC1Q8TDI8 760 aa13.25□□□□□ -0.29
GABPA-201ENST00000354828 BICRAQ9NZM4 1560 aa13.24□□□□□ -0.29
GABPA-201ENST00000354828 DNAJC5BQ9UF47 199 aa13.24□□□□□ -0.29
GABPA-201ENST00000354828 NPM2Q86SE8 214 aaKnown RBP13.23□□□□□ -0.29
GABPA-201ENST00000354828 JPH4Q96JJ6 628 aa13.23□□□□□ -0.29
GABPA-201ENST00000354828 FHAD1B1AJZ9 1412 aa13.22□□□□□ -0.29
GABPA-201ENST00000354828 POGKQ9P215 609 aa13.21□□□□□ -0.29
GABPA-201ENST00000354828 HDGFP51858 240 aaKnown RBP13.21□□□□□ -0.3
GABPA-201ENST00000354828 EFCAB2Q5VUJ9 269 aa13.2□□□□□ -0.3
GABPA-201ENST00000354828 KANK1Q14678 1352 aa13.2□□□□□ -0.3
GABPA-201ENST00000354828 ACIN1Q9UKV3 1341 aaKnown RBP13.19□□□□□ -0.3
GABPA-201ENST00000354828 HMGXB3Q12766 1538 aa13.17□□□□□ -0.3
GABPA-201ENST00000354828 MYT1Q01538 1121 aa13.17□□□□□ -0.3
GABPA-201ENST00000354828 AEBP2Q6ZN18 517 aaPredicted RBP13.16□□□□□ -0.3
GABPA-201ENST00000354828 SALL2Q9Y467 1007 aaPredicted RBP13.15□□□□□ -0.3
GABPA-201ENST00000354828 DDX10Q13206 875 aaKnown RBP13.15□□□□□ -0.3
GABPA-201ENST00000354828 NESP48681 1621 aa13.14□□□□□ -0.31
GABPA-201ENST00000354828 CFTRP13569 1480 aa13.14□□□□□ -0.31
GABPA-201ENST00000354828 WDR43Q15061 677 aaKnown RBP eCLIP13.14□□□□□ -0.31
GABPA-201ENST00000354828 RAPGEF2Q9Y4G8 1499 aa13.14□□□□□ -0.31
GABPA-201ENST00000354828 FGD5Q6ZNL6 1462 aa13.13□□□□□ -0.31
GABPA-201ENST00000354828 PPM1GO15355 546 aaPredicted RBP13.11□□□□□ -0.31
GABPA-201ENST00000354828 EIF4G2P78344 907 aaKnown RBP eCLIP13.11□□□□□ -0.31
GABPA-201ENST00000354828 FAM9BQ8IZU0 186 aa13.11□□□□□ -0.31
GABPA-201ENST00000354828 HIRIP3Q9BW71 556 aaPredicted RBP13.1□□□□□ -0.31
GABPA-201ENST00000354828 RAD54L2Q9Y4B4 1467 aa13.1□□□□□ -0.31
GABPA-201ENST00000354828 GAPVD1Q14C86 1478 aa13.09□□□□□ -0.31
GABPA-201ENST00000354828 CDCA8Q53HL2 280 aa13.08□□□□□ -0.32
GABPA-201ENST00000354828 CARD11Q9BXL7 1154 aa13.08□□□□□ -0.32
GABPA-201ENST00000354828 ARXQ96QS3 562 aa13.07□□□□□ -0.32
GABPA-201ENST00000354828 PTPRGP23470 1445 aa13.07□□□□□ -0.32
GABPA-201ENST00000354828 FMN1Q68DA7 1419 aa13.06□□□□□ -0.32
GABPA-201ENST00000354828 KIF3BO15066 747 aa13.06□□□□□ -0.32
GABPA-201ENST00000354828 FAM69CQ0P6D2 419 aa13.05□□□□□ -0.32
GABPA-201ENST00000354828 AQRO60306 1485 aaKnown RBP eCLIP13.04□□□□□ -0.32
GABPA-201ENST00000354828 MRC2Q9UBG0 1479 aa13.04□□□□□ -0.32
GABPA-201ENST00000354828 SAFB2Q14151 953 aaKnown RBP eCLIP13.04□□□□□ -0.32
GABPA-201ENST00000354828 HNRNPMP52272 730 aaKnown RBP eCLIP13.03□□□□□ -0.32
GABPA-201ENST00000354828 SPAG9O60271 1321 aaKnown RBP13.03□□□□□ -0.32
GABPA-201ENST00000354828 IGF1RP08069 1367 aa13.03□□□□□ -0.32
GABPA-201ENST00000354828 STK26Q9P289 416 aa13.02□□□□□ -0.32
GABPA-201ENST00000354828 RUSC2Q8N2Y8 1516 aa13.02□□□□□ -0.33
GABPA-201ENST00000354828 VPS8Q8N3P4 1428 aa13.02□□□□□ -0.33
GABPA-201ENST00000354828 KNSTRNQ9Y448 316 aa13.02□□□□□ -0.33
GABPA-201ENST00000354828 DCAF11Q8TEB1 546 aa13.02□□□□□ -0.33
GABPA-201ENST00000354828 CFAP53Q96M91 514 aa13.01□□□□□ -0.33
GABPA-201ENST00000354828 HNRNPUQ00839 825 aaKnown RBP eCLIP13.01□□□□□ -0.33
GABPA-201ENST00000354828 EID1Q9Y6B2 187 aa13.01□□□□□ -0.33
GABPA-201ENST00000354828 WASHC2CQ9Y4E1 1318 aa13.01□□□□□ -0.33
GABPA-201ENST00000354828 MRS2Q9HD23 443 aa13□□□□□ -0.33
GABPA-201ENST00000354828 SOX12O15370 315 aa13□□□□□ -0.33
GABPA-201ENST00000354828 FHOD3Q2V2M9 1422 aa13□□□□□ -0.33
GABPA-201ENST00000354828 SRPK2P78362 688 aaKnown RBP12.99□□□□□ -0.33
GABPA-201ENST00000354828 ARHGAP35Q9NRY4 1499 aa12.98□□□□□ -0.33
GABPA-201ENST00000354828 PKD2Q13563 968 aa12.97□□□□□ -0.33
GABPA-201ENST00000354828 UNC13AQ9UPW8 1703 aa12.96□□□□□ -0.33
GABPA-201ENST00000354828 GRIN2BQ13224 1484 aa12.96□□□□□ -0.33
GABPA-201ENST00000354828 TNNT2P45379 298 aaPredicted RBP12.95□□□□□ -0.34
GABPA-201ENST00000354828 TOPBP1Q92547 1522 aa12.95□□□□□ -0.34
GABPA-201ENST00000354828 IFT140Q96RY7 1462 aa12.95□□□□□ -0.34
GABPA-201ENST00000354828 NPHP1O15259 732 aa12.95□□□□□ -0.34
GABPA-201ENST00000354828 SIN3AQ96ST3 1273 aa12.95□□□□□ -0.34
GABPA-201ENST00000354828 KANK4Q5T7N3 995 aaPredicted RBP12.95□□□□□ -0.34
GABPA-201ENST00000354828 PAK3O75914 559 aaPredicted RBP12.94□□□□□ -0.34
GABPA-201ENST00000354828 ANKRD30AQ9BXX3 1397 aa12.94□□□□□ -0.34
GABPA-201ENST00000354828 RSPH4AQ5TD94 716 aa12.94□□□□□ -0.34
GABPA-201ENST00000354828 NUP155O75694 1391 aa12.93□□□□□ -0.34
GABPA-201ENST00000354828 LAMC3Q9Y6N6 1575 aa12.92□□□□□ -0.34
GABPA-201ENST00000354828 NUTM2DQ5VT03 806 aaPredicted RBP12.91□□□□□ -0.34
GABPA-201ENST00000354828 NUDCQ9Y266 331 aa12.91□□□□□ -0.34
GABPA-201ENST00000354828 CCDC9Q9Y3X0 531 aaKnown RBP12.91□□□□□ -0.34
GABPA-201ENST00000354828 POLA1P09884 1462 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms