RNA–Protein interactions for RNA: ENST00000354828.7

GABPA-201, Transcript of GA binding protein transcription factor subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABPA, Length 5,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPA-201ENST00000354828 DCAF8L2P0C7V8 631 aa17.96■□□□□ 0.47
GABPA-201ENST00000354828 NISCHQ9Y2I1 1504 aa17.84■□□□□ 0.45
GABPA-201ENST00000354828 SUPT5HO00267 1087 aaKnown RBP16.46■□□□□ 0.23
GABPA-201ENST00000354828 SHROOM4Q9ULL8 1493 aa16.42■□□□□ 0.22
GABPA-201ENST00000354828 EHMT2Q96KQ7 1210 aa15.91■□□□□ 0.14
GABPA-201ENST00000354828 FAM9AQ8IZU1 332 aaPredicted RBP15.7■□□□□ 0.1
GABPA-201ENST00000354828 APLP2Q06481 763 aa15.55■□□□□ 0.08
GABPA-201ENST00000354828 ABCC9O60706 1549 aa15.5■□□□□ 0.07
GABPA-201ENST00000354828 RANGAP1P46060 587 aaPredicted RBP15.43■□□□□ 0.06
GABPA-201ENST00000354828 ATP1B4Q9UN42 357 aaPredicted RBP15.32■□□□□ 0.04
GABPA-201ENST00000354828 TRIM41Q8WV44 630 aa15.29■□□□□ 0.04
GABPA-201ENST00000354828 PABPN1Q86U42 306 aaKnown RBP eCLIP15.28■□□□□ 0.04
GABPA-201ENST00000354828 TTBK1Q5TCY1 1321 aaPredicted RBP15.24■□□□□ 0.03
GABPA-201ENST00000354828 UBTFP17480 764 aaKnown RBP15.15■□□□□ 0.02
GABPA-201ENST00000354828 CCDC180Q9P1Z9 1646 aa14.97□□□□□ -0.01
GABPA-201ENST00000354828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.96□□□□□ -0.02
GABPA-201ENST00000354828 HNRNPUL2Q1KMD3 747 aaKnown RBP14.96□□□□□ -0.02
GABPA-201ENST00000354828 MYT1LQ9UL68 1186 aa14.93□□□□□ -0.02
GABPA-201ENST00000354828 ZCCHC6Q5VYS8 1495 aaKnown RBP14.77□□□□□ -0.04
GABPA-201ENST00000354828 PCGF6Q9BYE7 350 aa14.76□□□□□ -0.05
GABPA-201ENST00000354828 FBLN2P98095 1184 aa14.73□□□□□ -0.05
GABPA-201ENST00000354828 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
GABPA-201ENST00000354828 PPARGC1BQ86YN6 1023 aaKnown RBP14.63□□□□□ -0.07
GABPA-201ENST00000354828 RB1CC1Q8TDY2 1594 aa14.6□□□□□ -0.07
GABPA-201ENST00000354828 CHIC1Q5VXU3 224 aa14.59□□□□□ -0.07
GABPA-201ENST00000354828 ITGAEP38570 1179 aa14.58□□□□□ -0.08
GABPA-201ENST00000354828 CCER1Q8TC90 406 aaPredicted RBP14.57□□□□□ -0.08
GABPA-201ENST00000354828 NACADO15069 1562 aa14.5□□□□□ -0.09
GABPA-201ENST00000354828 LOC105371045A0A1W2PR82 267 aa14.39□□□□□ -0.11
GABPA-201ENST00000354828 PELP1Q8IZL8 1130 aaKnown RBP14.31□□□□□ -0.12
GABPA-201ENST00000354828 POLR3GLQ9BT43 218 aa14.3□□□□□ -0.12
GABPA-201ENST00000354828 ARID3CA6NKF2 412 aa14.29□□□□□ -0.12
GABPA-201ENST00000354828 DCAF1Q9Y4B6 1507 aa14.28□□□□□ -0.12
GABPA-201ENST00000354828 FAM50AQ14320 339 aaKnown RBP14.28□□□□□ -0.12
GABPA-201ENST00000354828 ZEB1P37275 1124 aaPredicted RBP14.27□□□□□ -0.13
GABPA-201ENST00000354828 P3H3Q8IVL6 736 aa14.26□□□□□ -0.13
GABPA-201ENST00000354828 NPM1P06748 294 aaKnown RBP eCLIP14.24□□□□□ -0.13
GABPA-201ENST00000354828 SLC4A1APQ9BWU0 796 aaKnown RBP14.21□□□□□ -0.13
GABPA-201ENST00000354828 TRIM52Q96A61 297 aa14.19□□□□□ -0.14
GABPA-201ENST00000354828 TRIM26Q12899 539 aaPredicted RBP14.14□□□□□ -0.15
GABPA-201ENST00000354828 CNGB1Q14028 1251 aaPredicted RBP14.12□□□□□ -0.15
GABPA-201ENST00000354828 ESF1Q9H501 851 aaKnown RBP14.12□□□□□ -0.15
GABPA-201ENST00000354828 CHMP7Q8WUX9 453 aaPredicted RBP14.11□□□□□ -0.15
GABPA-201ENST00000354828 BCANQ96GW7 911 aa14.11□□□□□ -0.15
GABPA-201ENST00000354828 ZNF777Q9ULD5 760 aaPredicted RBP14.11□□□□□ -0.15
GABPA-201ENST00000354828 CSRNP3Q8WYN3 585 aa14.1□□□□□ -0.15
GABPA-201ENST00000354828 PLPPR3Q6T4P5 718 aa14.1□□□□□ -0.15
GABPA-201ENST00000354828 CDK11AQ9UQ88 783 aaPredicted RBP14.09□□□□□ -0.15
GABPA-201ENST00000354828 RSF1Q96T23 1441 aaPredicted RBP14.07□□□□□ -0.16
GABPA-201ENST00000354828 MYO15BQ96JP2 1530 aa14.04□□□□□ -0.16
GABPA-201ENST00000354828 BAZ1BQ9UIG0 1483 aaKnown RBP14.04□□□□□ -0.16
GABPA-201ENST00000354828 ERCC6Q03468 1493 aa14.01□□□□□ -0.17
GABPA-201ENST00000354828 BAZ1AQ9NRL2 1556 aaPredicted RBP13.99□□□□□ -0.17
GABPA-201ENST00000354828 CECR2Q9BXF3 1484 aa13.98□□□□□ -0.17
GABPA-201ENST00000354828 ZNF326Q5BKZ1 582 aaKnown RBP13.97□□□□□ -0.17
GABPA-201ENST00000354828 CENPBP07199 599 aaPredicted RBP13.96□□□□□ -0.17
GABPA-201ENST00000354828 YTHDC1Q96MU7 727 aaKnown RBP13.94□□□□□ -0.18
GABPA-201ENST00000354828 NEUROD1Q13562 356 aa13.93□□□□□ -0.18
GABPA-201ENST00000354828 STAG3Q9UJ98 1225 aa13.91□□□□□ -0.18
GABPA-201ENST00000354828 NEFLP07196 543 aa13.91□□□□□ -0.18
GABPA-201ENST00000354828 CHGAP10645 457 aaKnown RBP13.86□□□□□ -0.19
GABPA-201ENST00000354828 KCNH8Q96L42 1107 aa13.83□□□□□ -0.19
GABPA-201ENST00000354828 TRHP20396 242 aaPredicted RBP13.79□□□□□ -0.2
GABPA-201ENST00000354828 MROH2BQ7Z745 1585 aa13.79□□□□□ -0.2
GABPA-201ENST00000354828 SMARCA2P51531 1590 aa13.77□□□□□ -0.21
GABPA-201ENST00000354828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.76□□□□□ -0.21
GABPA-201ENST00000354828 WRNQ14191 1432 aaPredicted RBP eCLIP13.74□□□□□ -0.21
GABPA-201ENST00000354828 TSPY4P0CV99 314 aa13.73□□□□□ -0.21
GABPA-201ENST00000354828 TSPY10P0CW01 314 aa13.73□□□□□ -0.21
GABPA-201ENST00000354828 ARID4BQ4LE39 1312 aaPredicted RBP13.72□□□□□ -0.21
GABPA-201ENST00000354828 SLC24A1O60721 1099 aa13.72□□□□□ -0.21
GABPA-201ENST00000354828 PLEKHD1A6NEE1 506 aa13.71□□□□□ -0.22
GABPA-201ENST00000354828 CHIC2Q9UKJ5 165 aa13.7□□□□□ -0.22
GABPA-201ENST00000354828 ERICH6Q7L0X2 663 aa13.7□□□□□ -0.22
GABPA-201ENST00000354828 MTUS2Q5JR59 1369 aa13.67□□□□□ -0.22
GABPA-201ENST00000354828 HRCP23327 699 aa13.65□□□□□ -0.22
GABPA-201ENST00000354828 PDS5BQ9NTI5 1447 aa13.65□□□□□ -0.22
GABPA-201ENST00000354828 ATAD2BQ9ULI0 1458 aa13.64□□□□□ -0.23
GABPA-201ENST00000354828 CCDC88BA6NC98 1476 aa13.62□□□□□ -0.23
GABPA-201ENST00000354828 KIF27Q86VH2 1401 aa13.61□□□□□ -0.23
GABPA-201ENST00000354828 NEFMP07197 916 aa13.61□□□□□ -0.23
GABPA-201ENST00000354828 EEA1Q15075 1411 aa13.58□□□□□ -0.24
GABPA-201ENST00000354828 CADPSQ9ULU8 1353 aa13.58□□□□□ -0.24
GABPA-201ENST00000354828 SENP3Q9H4L4 574 aaPredicted RBP13.57□□□□□ -0.24
GABPA-201ENST00000354828 SCAF1Q9H7N4 1312 aaKnown RBP13.56□□□□□ -0.24
GABPA-201ENST00000354828 PPP1R15AO75807 674 aaPredicted RBP13.56□□□□□ -0.24
GABPA-201ENST00000354828 SMARCA4P51532 1647 aa13.55□□□□□ -0.24
GABPA-201ENST00000354828 WIZO95785 1651 aa13.54□□□□□ -0.24
GABPA-201ENST00000354828 C14orf37Q86TY3 774 aa13.54□□□□□ -0.24
GABPA-201ENST00000354828 TOP2AP11388 1531 aaKnown RBP13.54□□□□□ -0.24
GABPA-201ENST00000354828 CLIP1P30622 1438 aa13.52□□□□□ -0.25
GABPA-201ENST00000354828 CFDP1Q9UEE9 299 aaPredicted RBP13.5□□□□□ -0.25
GABPA-201ENST00000354828 CUX2O14529 1486 aa13.48□□□□□ -0.25
GABPA-201ENST00000354828 ANP32CO43423 234 aa13.47□□□□□ -0.25
GABPA-201ENST00000354828 PLEKHG5O94827 1062 aa13.47□□□□□ -0.25
GABPA-201ENST00000354828 KDM2AQ9Y2K7 1162 aa13.47□□□□□ -0.25
GABPA-201ENST00000354828 RRP7BPQ9NSQ0 103 aa13.46□□□□□ -0.25
GABPA-201ENST00000354828 EIF4G1Q04637 1599 aaKnown RBP13.46□□□□□ -0.25
GABPA-201ENST00000354828 DAXXQ9UER7 740 aaPredicted RBP13.46□□□□□ -0.25
GABPA-201ENST00000354828 TONSLQ96HA7 1378 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms