RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 ARAP1Q96P48 1450 aa16.38■□□□□ 0.21
SVIP-201ENST00000354193 NEUROD1Q13562 356 aa16.38■□□□□ 0.21
SVIP-201ENST00000354193 MRC2Q9UBG0 1479 aa16.37■□□□□ 0.21
SVIP-201ENST00000354193 ZNF608Q9ULD9 1512 aaPredicted RBP16.34■□□□□ 0.21
SVIP-201ENST00000354193 ARHGAP35Q9NRY4 1499 aa16.32■□□□□ 0.2
SVIP-201ENST00000354193 TRIM52Q96A61 297 aa16.32■□□□□ 0.2
SVIP-201ENST00000354193 ABCA10Q8WWZ4 1543 aa16.32■□□□□ 0.2
SVIP-201ENST00000354193 MYT1LQ9UL68 1186 aa16.31■□□□□ 0.2
SVIP-201ENST00000354193 KIF21AQ7Z4S6 1674 aa16.29■□□□□ 0.2
SVIP-201ENST00000354193 ERICH3Q5RHP9 1530 aa16.28■□□□□ 0.2
SVIP-201ENST00000354193 JPH4Q96JJ6 628 aa16.28■□□□□ 0.2
SVIP-201ENST00000354193 FHAD1B1AJZ9 1412 aa16.27■□□□□ 0.19
SVIP-201ENST00000354193 KCNH8Q96L42 1107 aa16.27■□□□□ 0.19
SVIP-201ENST00000354193 RRP7BPQ9NSQ0 103 aa16.26■□□□□ 0.19
SVIP-201ENST00000354193 CDK11AQ9UQ88 783 aaPredicted RBP16.26■□□□□ 0.19
SVIP-201ENST00000354193 CCNB3Q8WWL7 1395 aa16.22■□□□□ 0.19
SVIP-201ENST00000354193 GRIN2BQ13224 1484 aa16.22■□□□□ 0.19
SVIP-201ENST00000354193 SNAPC4Q5SXM2 1469 aa16.19■□□□□ 0.18
SVIP-201ENST00000354193 IFT140Q96RY7 1462 aa16.18■□□□□ 0.18
SVIP-201ENST00000354193 FMN1Q68DA7 1419 aa16.17■□□□□ 0.18
SVIP-201ENST00000354193 PLEKHD1A6NEE1 506 aa16.16■□□□□ 0.18
SVIP-201ENST00000354193 YTHDC1Q96MU7 727 aaKnown RBP16.15■□□□□ 0.18
SVIP-201ENST00000354193 PRDM2Q13029 1718 aa16.12■□□□□ 0.17
SVIP-201ENST00000354193 CFDP1Q9UEE9 299 aaPredicted RBP16.11■□□□□ 0.17
SVIP-201ENST00000354193 PHLDB1Q86UU1 1377 aa16.1■□□□□ 0.17
SVIP-201ENST00000354193 DIEXFQ68CQ4 756 aaKnown RBP16.1■□□□□ 0.17
SVIP-201ENST00000354193 SIN3AQ96ST3 1273 aa16.09■□□□□ 0.17
SVIP-201ENST00000354193 CNGB1Q14028 1251 aaPredicted RBP16.07■□□□□ 0.16
SVIP-201ENST00000354193 HIRIP3Q9BW71 556 aaPredicted RBP16.06■□□□□ 0.16
SVIP-201ENST00000354193 CARMIL2Q6F5E8 1435 aa16.06■□□□□ 0.16
SVIP-201ENST00000354193 ZNF326Q5BKZ1 582 aaKnown RBP16.05■□□□□ 0.16
SVIP-201ENST00000354193 ZNF644Q9H582 1327 aaPredicted RBP16.03■□□□□ 0.16
SVIP-201ENST00000354193 LRRC9Q6ZRR7 1453 aa16.02■□□□□ 0.15
SVIP-201ENST00000354193 POLR3GLQ9BT43 218 aa16.02■□□□□ 0.15
SVIP-201ENST00000354193 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.01■□□□□ 0.15
SVIP-201ENST00000354193 RAB3GAP2Q9H2M9 1393 aa16■□□□□ 0.15
SVIP-201ENST00000354193 ZNF316A6NFI3 1004 aaPredicted RBP16■□□□□ 0.15
SVIP-201ENST00000354193 CUL7Q14999 1698 aa15.99■□□□□ 0.15
SVIP-201ENST00000354193 NPM1P06748 294 aaKnown RBP eCLIP15.99■□□□□ 0.15
SVIP-201ENST00000354193 FOXD1Q16676 465 aa15.99■□□□□ 0.15
SVIP-201ENST00000354193 CASKIN1Q8WXD9 1431 aa15.99■□□□□ 0.15
SVIP-201ENST00000354193 GRIN2AQ12879 1464 aa15.98■□□□□ 0.15
SVIP-201ENST00000354193 PTPRGP23470 1445 aa15.98■□□□□ 0.15
SVIP-201ENST00000354193 TSPY4P0CV99 314 aa15.98■□□□□ 0.15
SVIP-201ENST00000354193 TSPY10P0CW01 314 aa15.98■□□□□ 0.15
SVIP-201ENST00000354193 PCF11O94913 1555 aaKnown RBP15.97■□□□□ 0.15
SVIP-201ENST00000354193 TARBP1Q13395 1621 aaKnown RBP15.96■□□□□ 0.14
SVIP-201ENST00000354193 PRG4Q92954 1404 aaPredicted RBP15.95■□□□□ 0.14
SVIP-201ENST00000354193 WDR62O43379 1518 aa15.95■□□□□ 0.14
SVIP-201ENST00000354193 CDK13Q14004 1512 aaKnown RBP15.94■□□□□ 0.14
SVIP-201ENST00000354193 IQGAP2Q13576 1575 aa15.94■□□□□ 0.14
SVIP-201ENST00000354193 KIAA0586Q9BVV6 1533 aa15.93■□□□□ 0.14
SVIP-201ENST00000354193 SYNJ2O15056 1496 aa15.93■□□□□ 0.14
SVIP-201ENST00000354193 ABCA5Q8WWZ7 1642 aa15.93■□□□□ 0.14
SVIP-201ENST00000354193 HNRNPMP52272 730 aaKnown RBP eCLIP15.92■□□□□ 0.14
SVIP-201ENST00000354193 TIAM1Q13009 1591 aa15.92■□□□□ 0.14
SVIP-201ENST00000354193 SLC4A1APQ9BWU0 796 aaKnown RBP15.92■□□□□ 0.14
SVIP-201ENST00000354193 EIF4G3O43432 1585 aaKnown RBP15.92■□□□□ 0.14
SVIP-201ENST00000354193 PLB1Q6P1J6 1458 aa15.92■□□□□ 0.14
SVIP-201ENST00000354193 SETD5Q9C0A6 1442 aa15.92■□□□□ 0.14
SVIP-201ENST00000354193 FYCO1Q9BQS8 1478 aa15.9■□□□□ 0.14
SVIP-201ENST00000354193 EFCAB5A4FU69 1503 aa15.9■□□□□ 0.14
SVIP-201ENST00000354193 NCOA2Q15596 1464 aa15.88■□□□□ 0.13
SVIP-201ENST00000354193 OSCARQ8IYS5 282 aa15.88■□□□□ 0.13
SVIP-201ENST00000354193 TONSLQ96HA7 1378 aa15.88■□□□□ 0.13
SVIP-201ENST00000354193 MAGI1Q96QZ7 1491 aaPredicted RBP15.88■□□□□ 0.13
SVIP-201ENST00000354193 DHX57Q6P158 1386 aaKnown RBP15.87■□□□□ 0.13
SVIP-201ENST00000354193 FGD6Q6ZV73 1430 aa15.87■□□□□ 0.13
SVIP-201ENST00000354193 ADAMTS12P58397 1594 aa15.86■□□□□ 0.13
SVIP-201ENST00000354193 CYB5RLQ6IPT4 315 aa15.86■□□□□ 0.13
SVIP-201ENST00000354193 RRBP1Q9P2E9 1410 aaKnown RBP15.84■□□□□ 0.13
SVIP-201ENST00000354193 CCDC18Q5T9S5 1454 aa15.84■□□□□ 0.13
SVIP-201ENST00000354193 PBRM1Q86U86 1689 aa15.82■□□□□ 0.12
SVIP-201ENST00000354193 KDM2AQ9Y2K7 1162 aa15.82■□□□□ 0.12
SVIP-201ENST00000354193 EPRSP07814 1512 aaKnown RBP15.82■□□□□ 0.12
SVIP-201ENST00000354193 MYOM3Q5VTT5 1437 aa15.82■□□□□ 0.12
SVIP-201ENST00000354193 SENP3Q9H4L4 574 aaPredicted RBP15.82■□□□□ 0.12
SVIP-201ENST00000354193 CTTNBP2Q8WZ74 1663 aa15.8■□□□□ 0.12
SVIP-201ENST00000354193 DDX10Q13206 875 aaKnown RBP15.8■□□□□ 0.12
SVIP-201ENST00000354193 THOC2Q8NI27 1593 aaKnown RBP15.78■□□□□ 0.12
SVIP-201ENST00000354193 RGL3Q3MIN7 710 aa15.78■□□□□ 0.12
SVIP-201ENST00000354193 MIER1Q8N108 512 aa15.75■□□□□ 0.11
SVIP-201ENST00000354193 MPHOSPH9Q99550 1183 aa15.75■□□□□ 0.11
SVIP-201ENST00000354193 WDR97A6NE52 1622 aa15.75■□□□□ 0.11
SVIP-201ENST00000354193 DISP1Q96F81 1524 aa15.73■□□□□ 0.11
SVIP-201ENST00000354193 PLPPR3Q6T4P5 718 aa15.71■□□□□ 0.11
SVIP-201ENST00000354193 PKD2Q13563 968 aa15.71■□□□□ 0.11
SVIP-201ENST00000354193 CENPBP07199 599 aaPredicted RBP15.71■□□□□ 0.11
SVIP-201ENST00000354193 CHGAP10645 457 aaKnown RBP15.71■□□□□ 0.11
SVIP-201ENST00000354193 CEP170Q5SW79 1584 aa15.7■□□□□ 0.1
SVIP-201ENST00000354193 HECW1Q76N89 1606 aa15.7■□□□□ 0.1
SVIP-201ENST00000354193 NUP153P49790 1475 aaKnown RBP15.7■□□□□ 0.1
SVIP-201ENST00000354193 EFCAB2Q5VUJ9 269 aa15.69■□□□□ 0.1
SVIP-201ENST00000354193 TROQ12816 1431 aaPredicted RBP15.68■□□□□ 0.1
SVIP-201ENST00000354193 CLSPNQ9HAW4 1339 aa15.68■□□□□ 0.1
SVIP-201ENST00000354193 PTPRKQ15262 1439 aa15.68■□□□□ 0.1
SVIP-201ENST00000354193 AFAP1Q8N556 730 aa15.67■□□□□ 0.1
SVIP-201ENST00000354193 NUP160Q12769 1436 aa15.67■□□□□ 0.1
SVIP-201ENST00000354193 EHBP1L1Q8N3D4 1523 aa15.67■□□□□ 0.1
SVIP-201ENST00000354193 NUP155O75694 1391 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms