RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 NISCHQ9Y2I1 1504 aa23.08■■□□□ 1.29
SVIP-201ENST00000354193 DCAF8L2P0C7V8 631 aa20.88■□□□□ 0.93
SVIP-201ENST00000354193 SHROOM4Q9ULL8 1493 aa20.33■□□□□ 0.84
SVIP-201ENST00000354193 SUPT5HO00267 1087 aaKnown RBP19.84■□□□□ 0.77
SVIP-201ENST00000354193 ABCC9O60706 1549 aa19.53■□□□□ 0.72
SVIP-201ENST00000354193 CCDC180Q9P1Z9 1646 aa19.44■□□□□ 0.7
SVIP-201ENST00000354193 ZCCHC6Q5VYS8 1495 aaKnown RBP19.27■□□□□ 0.67
SVIP-201ENST00000354193 PABPN1Q86U42 306 aaKnown RBP eCLIP18.89■□□□□ 0.61
SVIP-201ENST00000354193 SCRIBQ14160 1630 aa18.81■□□□□ 0.6
SVIP-201ENST00000354193 EHMT2Q96KQ7 1210 aa18.71■□□□□ 0.59
SVIP-201ENST00000354193 FAM9AQ8IZU1 332 aaPredicted RBP18.52■□□□□ 0.56
SVIP-201ENST00000354193 DCAF1Q9Y4B6 1507 aa18.52■□□□□ 0.56
SVIP-201ENST00000354193 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
SVIP-201ENST00000354193 NACADO15069 1562 aa18.43■□□□□ 0.54
SVIP-201ENST00000354193 RB1CC1Q8TDY2 1594 aa18.4■□□□□ 0.54
SVIP-201ENST00000354193 TRIM41Q8WV44 630 aa18.33■□□□□ 0.52
SVIP-201ENST00000354193 CECR2Q9BXF3 1484 aa18.29■□□□□ 0.52
SVIP-201ENST00000354193 RSF1Q96T23 1441 aaPredicted RBP18.22■□□□□ 0.51
SVIP-201ENST00000354193 LOC105371045A0A1W2PR82 267 aa18.18■□□□□ 0.5
SVIP-201ENST00000354193 MYO15BQ96JP2 1530 aa18.13■□□□□ 0.49
SVIP-201ENST00000354193 MROH2BQ7Z745 1585 aa18.03■□□□□ 0.48
SVIP-201ENST00000354193 RANGAP1P46060 587 aaPredicted RBP17.95■□□□□ 0.46
SVIP-201ENST00000354193 TTBK1Q5TCY1 1321 aaPredicted RBP17.88■□□□□ 0.45
SVIP-201ENST00000354193 WIZO95785 1651 aa17.83■□□□□ 0.45
SVIP-201ENST00000354193 BAZ1AQ9NRL2 1556 aaPredicted RBP17.81■□□□□ 0.44
SVIP-201ENST00000354193 PPARGC1BQ86YN6 1023 aaKnown RBP17.8■□□□□ 0.44
SVIP-201ENST00000354193 PCGF6Q9BYE7 350 aa17.76■□□□□ 0.43
SVIP-201ENST00000354193 UBTFP17480 764 aaKnown RBP17.76■□□□□ 0.43
SVIP-201ENST00000354193 BAZ1BQ9UIG0 1483 aaKnown RBP17.62■□□□□ 0.41
SVIP-201ENST00000354193 BICRAQ9NZM4 1560 aa17.62■□□□□ 0.41
SVIP-201ENST00000354193 SMARCA4P51532 1647 aa17.61■□□□□ 0.41
SVIP-201ENST00000354193 UNC13AQ9UPW8 1703 aa17.6■□□□□ 0.41
SVIP-201ENST00000354193 CCDC88BA6NC98 1476 aa17.59■□□□□ 0.41
SVIP-201ENST00000354193 ATAD2BQ9ULI0 1458 aa17.5■□□□□ 0.39
SVIP-201ENST00000354193 ABCC8Q09428 1581 aa17.47■□□□□ 0.39
SVIP-201ENST00000354193 TOP2AP11388 1531 aaKnown RBP17.44■□□□□ 0.38
SVIP-201ENST00000354193 CSRNP3Q8WYN3 585 aa17.41■□□□□ 0.38
SVIP-201ENST00000354193 ATP1B4Q9UN42 357 aaPredicted RBP17.37■□□□□ 0.37
SVIP-201ENST00000354193 SMARCA2P51531 1590 aa17.35■□□□□ 0.37
SVIP-201ENST00000354193 APLP2Q06481 763 aa17.35■□□□□ 0.37
SVIP-201ENST00000354193 EIF4G1Q04637 1599 aaKnown RBP17.34■□□□□ 0.37
SVIP-201ENST00000354193 DNAJC5BQ9UF47 199 aa17.34■□□□□ 0.37
SVIP-201ENST00000354193 WRNQ14191 1432 aaPredicted RBP eCLIP17.33■□□□□ 0.37
SVIP-201ENST00000354193 SOGA1O94964 1423 aa17.3■□□□□ 0.36
SVIP-201ENST00000354193 TRIM26Q12899 539 aaPredicted RBP17.2■□□□□ 0.34
SVIP-201ENST00000354193 RUSC2Q8N2Y8 1516 aa17.17■□□□□ 0.34
SVIP-201ENST00000354193 P3H3Q8IVL6 736 aa17.16■□□□□ 0.34
SVIP-201ENST00000354193 NCAPD3P42695 1498 aa17.15■□□□□ 0.34
SVIP-201ENST00000354193 CC2D2AQ9P2K1 1620 aa17.1■□□□□ 0.33
SVIP-201ENST00000354193 CADPSQ9ULU8 1353 aa17.08■□□□□ 0.32
SVIP-201ENST00000354193 FBLN2P98095 1184 aa17.06■□□□□ 0.32
SVIP-201ENST00000354193 HNRNPUL2Q1KMD3 747 aaKnown RBP17.04■□□□□ 0.32
SVIP-201ENST00000354193 ITGAEP38570 1179 aa17.03■□□□□ 0.32
SVIP-201ENST00000354193 NESP48681 1621 aa17.02■□□□□ 0.31
SVIP-201ENST00000354193 CCER1Q8TC90 406 aaPredicted RBP16.98■□□□□ 0.31
SVIP-201ENST00000354193 ARID3CA6NKF2 412 aa16.97■□□□□ 0.31
SVIP-201ENST00000354193 CEP162Q5TB80 1403 aa16.96■□□□□ 0.31
SVIP-201ENST00000354193 PEG3Q9GZU2 1588 aa16.95■□□□□ 0.3
SVIP-201ENST00000354193 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.95■□□□□ 0.3
SVIP-201ENST00000354193 CUX2O14529 1486 aa16.93■□□□□ 0.3
SVIP-201ENST00000354193 SYNJ1O43426 1573 aa16.92■□□□□ 0.3
SVIP-201ENST00000354193 HMGXB3Q12766 1538 aa16.91■□□□□ 0.3
SVIP-201ENST00000354193 KIF27Q86VH2 1401 aa16.9■□□□□ 0.3
SVIP-201ENST00000354193 HRCP23327 699 aa16.9■□□□□ 0.3
SVIP-201ENST00000354193 TDRD9Q8NDG6 1382 aaKnown RBP16.89■□□□□ 0.3
SVIP-201ENST00000354193 FANCD2Q9BXW9 1451 aa16.89■□□□□ 0.29
SVIP-201ENST00000354193 GOLGA3Q08378 1498 aa16.89■□□□□ 0.29
SVIP-201ENST00000354193 EEA1Q15075 1411 aa16.89■□□□□ 0.29
SVIP-201ENST00000354193 CFTRP13569 1480 aa16.88■□□□□ 0.29
SVIP-201ENST00000354193 CLIP1P30622 1438 aa16.88■□□□□ 0.29
SVIP-201ENST00000354193 TNIKQ9UKE5 1360 aa16.85■□□□□ 0.29
SVIP-201ENST00000354193 CEP164Q9UPV0 1460 aa16.83■□□□□ 0.28
SVIP-201ENST00000354193 RAPGEF2Q9Y4G8 1499 aa16.83■□□□□ 0.28
SVIP-201ENST00000354193 ERCC6Q03468 1493 aa16.82■□□□□ 0.28
SVIP-201ENST00000354193 RAD54L2Q9Y4B4 1467 aa16.8■□□□□ 0.28
SVIP-201ENST00000354193 PDS5BQ9NTI5 1447 aa16.8■□□□□ 0.28
SVIP-201ENST00000354193 CARMIL1Q5VZK9 1371 aa16.77■□□□□ 0.28
SVIP-201ENST00000354193 CUX1P39880 1505 aa16.77■□□□□ 0.27
SVIP-201ENST00000354193 FGD5Q6ZNL6 1462 aa16.76■□□□□ 0.27
SVIP-201ENST00000354193 FAM50AQ14320 339 aaKnown RBP16.72■□□□□ 0.27
SVIP-201ENST00000354193 CHMP7Q8WUX9 453 aaPredicted RBP16.68■□□□□ 0.26
SVIP-201ENST00000354193 IGF1RP08069 1367 aa16.66■□□□□ 0.26
SVIP-201ENST00000354193 TOP2BQ02880 1626 aa16.64■□□□□ 0.25
SVIP-201ENST00000354193 KANK4Q5T7N3 995 aaPredicted RBP16.61■□□□□ 0.25
SVIP-201ENST00000354193 TOPBP1Q92547 1522 aa16.58■□□□□ 0.25
SVIP-201ENST00000354193 ZEB1P37275 1124 aaPredicted RBP16.57■□□□□ 0.24
SVIP-201ENST00000354193 POLA1P09884 1462 aaPredicted RBP16.57■□□□□ 0.24
SVIP-201ENST00000354193 AQRO60306 1485 aaKnown RBP eCLIP16.57■□□□□ 0.24
SVIP-201ENST00000354193 VPS8Q8N3P4 1428 aa16.51■□□□□ 0.23
SVIP-201ENST00000354193 URB2Q14146 1524 aaKnown RBP16.49■□□□□ 0.23
SVIP-201ENST00000354193 FHOD3Q2V2M9 1422 aa16.48■□□□□ 0.23
SVIP-201ENST00000354193 GAPVD1Q14C86 1478 aa16.48■□□□□ 0.23
SVIP-201ENST00000354193 PRXQ9BXM0 1461 aa16.46■□□□□ 0.23
SVIP-201ENST00000354193 LAMC3Q9Y6N6 1575 aa16.44■□□□□ 0.22
SVIP-201ENST00000354193 ZNF777Q9ULD5 760 aaPredicted RBP16.43■□□□□ 0.22
SVIP-201ENST00000354193 DNMBPQ6XZF7 1577 aa16.42■□□□□ 0.22
SVIP-201ENST00000354193 MTUS2Q5JR59 1369 aa16.41■□□□□ 0.22
SVIP-201ENST00000354193 CHIC2Q9UKJ5 165 aa16.41■□□□□ 0.22
SVIP-201ENST00000354193 BIVM-ERCC5R4GMW8 1640 aa16.4■□□□□ 0.22
SVIP-201ENST00000354193 KIF21BO75037 1637 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms