RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 SHROOM2Q13796 1616 aa34.44■■■■□ 3.1
SYNE2-201ENST00000341472 KIAA0586Q9BVV6 1533 aa34.39■■■■□ 3.1
SYNE2-201ENST00000341472 CUL7Q14999 1698 aa34.36■■■■□ 3.09
SYNE2-201ENST00000341472 RUSC2Q8N2Y8 1516 aa34.3■■■■□ 3.08
SYNE2-201ENST00000341472 NPM1P06748 294 aaKnown RBP eCLIP34.2■■■■□ 3.07
SYNE2-201ENST00000341472 RAPGEF2Q9Y4G8 1499 aa34.16■■■■□ 3.06
SYNE2-201ENST00000341472 TTBK1Q5TCY1 1321 aaPredicted RBP34.09■■■■□ 3.05
SYNE2-201ENST00000341472 PTPRGP23470 1445 aa34.09■■■■□ 3.05
SYNE2-201ENST00000341472 CARMIL2Q6F5E8 1435 aa34.09■■■■□ 3.05
SYNE2-201ENST00000341472 TNIKQ9UKE5 1360 aa34.03■■■■□ 3.04
SYNE2-201ENST00000341472 IQGAP2Q13576 1575 aa33.98■■■■□ 3.03
SYNE2-201ENST00000341472 CSRNP3Q8WYN3 585 aa33.93■■■■□ 3.02
SYNE2-201ENST00000341472 FAM69CQ0P6D2 419 aa33.92■■■■□ 3.02
SYNE2-201ENST00000341472 PRXQ9BXM0 1461 aa33.9■■■■□ 3.02
SYNE2-201ENST00000341472 DISP1Q96F81 1524 aa33.86■■■■□ 3.01
SYNE2-201ENST00000341472 ADCY10Q96PN6 1610 aa33.86■■■■□ 3.01
SYNE2-201ENST00000341472 UGGT2Q9NYU1 1516 aa33.84■■■■□ 3.01
SYNE2-201ENST00000341472 ABCC10Q5T3U5 1492 aa33.8■■■■□ 3
SYNE2-201ENST00000341472 MAPKBP1O60336 1514 aa33.79■■■■□ 3
SYNE2-201ENST00000341472 UACAQ9BZF9 1416 aa33.79■■■■□ 3
SYNE2-201ENST00000341472 FAM9AQ8IZU1 332 aaPredicted RBP33.72■■■□□ 2.99
SYNE2-201ENST00000341472 ABCC2Q92887 1545 aa33.72■■■□□ 2.99
SYNE2-201ENST00000341472 UHRF1BP1LA0JNW5 1464 aa33.71■■■□□ 2.99
SYNE2-201ENST00000341472 EEA1Q15075 1411 aa33.7■■■□□ 2.99
SYNE2-201ENST00000341472 GOLGA3Q08378 1498 aa33.68■■■□□ 2.98
SYNE2-201ENST00000341472 CHIC1Q5VXU3 224 aa33.65■■■□□ 2.98
SYNE2-201ENST00000341472 KIAA0556O60303 1618 aa33.64■■■□□ 2.98
SYNE2-201ENST00000341472 ASXL2Q76L83 1435 aa33.61■■■□□ 2.97
SYNE2-201ENST00000341472 PLB1Q6P1J6 1458 aa33.6■■■□□ 2.97
SYNE2-201ENST00000341472 KIF13AQ9H1H9 1805 aa33.6■■■□□ 2.97
SYNE2-201ENST00000341472 P3H3Q8IVL6 736 aa33.59■■■□□ 2.97
SYNE2-201ENST00000341472 DIP2BQ9P265 1576 aa33.58■■■□□ 2.97
SYNE2-201ENST00000341472 CTTNBP2Q8WZ74 1663 aa33.55■■■□□ 2.96
SYNE2-201ENST00000341472 KDM5BQ9UGL1 1544 aa33.54■■■□□ 2.96
SYNE2-201ENST00000341472 RANGAP1P46060 587 aaPredicted RBP33.46■■■□□ 2.95
SYNE2-201ENST00000341472 EPRSP07814 1512 aaKnown RBP33.37■■■□□ 2.93
SYNE2-201ENST00000341472 ABCA8O94911 1581 aa33.36■■■□□ 2.93
SYNE2-201ENST00000341472 GLI2P10070 1586 aa33.36■■■□□ 2.93
SYNE2-201ENST00000341472 AEBP2Q6ZN18 517 aaPredicted RBP33.36■■■□□ 2.93
SYNE2-201ENST00000341472 KCNH8Q96L42 1107 aa33.36■■■□□ 2.93
SYNE2-201ENST00000341472 ARID3CA6NKF2 412 aa33.34■■■□□ 2.93
SYNE2-201ENST00000341472 ZCCHC11Q5TAX3 1644 aaKnown RBP33.33■■■□□ 2.93
SYNE2-201ENST00000341472 EHMT2Q96KQ7 1210 aa33.33■■■□□ 2.93
SYNE2-201ENST00000341472 UBTFP17480 764 aaKnown RBP33.32■■■□□ 2.92
SYNE2-201ENST00000341472 WDR7Q9Y4E6 1490 aa33.3■■■□□ 2.92
SYNE2-201ENST00000341472 TSPOAP1O95153 1857 aa33.25■■■□□ 2.91
SYNE2-201ENST00000341472 KIF21BO75037 1637 aa33.23■■■□□ 2.91
SYNE2-201ENST00000341472 ATP10BO94823 1461 aa33.23■■■□□ 2.91
SYNE2-201ENST00000341472 SAMD9Q5K651 1589 aa33.22■■■□□ 2.91
SYNE2-201ENST00000341472 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.21■■■□□ 2.91
SYNE2-201ENST00000341472 HNRNPUL2Q1KMD3 747 aaKnown RBP33.21■■■□□ 2.91
SYNE2-201ENST00000341472 KDM6BO15054 1643 aa33.2■■■□□ 2.91
SYNE2-201ENST00000341472 FHOD3Q2V2M9 1422 aa33.19■■■□□ 2.9
SYNE2-201ENST00000341472 CD109Q6YHK3 1445 aa33.15■■■□□ 2.9
SYNE2-201ENST00000341472 TEX14Q8IWB6 1497 aa33.15■■■□□ 2.9
SYNE2-201ENST00000341472 MAP3K4Q9Y6R4 1608 aa33.09■■■□□ 2.89
SYNE2-201ENST00000341472 PPRC1Q5VV67 1664 aaKnown RBP33.07■■■□□ 2.88
SYNE2-201ENST00000341472 COL17A1Q9UMD9 1497 aaPredicted RBP33.06■■■□□ 2.88
SYNE2-201ENST00000341472 EFCAB5A4FU69 1503 aa33.05■■■□□ 2.88
SYNE2-201ENST00000341472 PLEKHD1A6NEE1 506 aa33.04■■■□□ 2.88
SYNE2-201ENST00000341472 RAPGEF6Q8TEU7 1601 aa33.03■■■□□ 2.88
SYNE2-201ENST00000341472 MAGI3Q5TCQ9 1506 aa33.02■■■□□ 2.88
SYNE2-201ENST00000341472 NUP153P49790 1475 aaKnown RBP33.02■■■□□ 2.88
SYNE2-201ENST00000341472 ATP1B4Q9UN42 357 aaPredicted RBP32.96■■■□□ 2.87
SYNE2-201ENST00000341472 KDM4FA0A1W2PPD8 638 aa32.94■■■□□ 2.86
SYNE2-201ENST00000341472 CFAP43Q8NDM7 1665 aa32.9■■■□□ 2.86
SYNE2-201ENST00000341472 ARHGAP35Q9NRY4 1499 aa32.88■■■□□ 2.85
SYNE2-201ENST00000341472 FMN1Q68DA7 1419 aa32.87■■■□□ 2.85
SYNE2-201ENST00000341472 PHLDB1Q86UU1 1377 aa32.85■■■□□ 2.85
SYNE2-201ENST00000341472 ABCA9Q8IUA7 1624 aa32.78■■■□□ 2.84
SYNE2-201ENST00000341472 CDK11AQ9UQ88 783 aaPredicted RBP32.78■■■□□ 2.84
SYNE2-201ENST00000341472 ARAP3Q8WWN8 1544 aa32.76■■■□□ 2.83
SYNE2-201ENST00000341472 RAPGEF3O95398 923 aa32.73■■■□□ 2.83
SYNE2-201ENST00000341472 NEO1Q92859 1461 aa32.71■■■□□ 2.83
SYNE2-201ENST00000341472 CDK13Q14004 1512 aaKnown RBP32.7■■■□□ 2.83
SYNE2-201ENST00000341472 ADGRL1O94910 1474 aa32.62■■■□□ 2.81
SYNE2-201ENST00000341472 HECW1Q76N89 1606 aa32.6■■■□□ 2.81
SYNE2-201ENST00000341472 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.6■■■□□ 2.81
SYNE2-201ENST00000341472 AKNAQ7Z591 1439 aa32.59■■■□□ 2.81
SYNE2-201ENST00000341472 CLIP1P30622 1438 aa32.58■■■□□ 2.81
SYNE2-201ENST00000341472 FANCAO15360 1455 aa32.56■■■□□ 2.8
SYNE2-201ENST00000341472 CASKIN1Q8WXD9 1431 aa32.55■■■□□ 2.8
SYNE2-201ENST00000341472 EFCAB2Q5VUJ9 269 aa32.54■■■□□ 2.8
SYNE2-201ENST00000341472 PLCH2O75038 1416 aa32.53■■■□□ 2.8
SYNE2-201ENST00000341472 TROQ12816 1431 aaPredicted RBP32.52■■■□□ 2.8
SYNE2-201ENST00000341472 DENND4BO75064 1496 aaPredicted RBP32.52■■■□□ 2.8
SYNE2-201ENST00000341472 TTC37Q6PGP7 1564 aa32.47■■■□□ 2.79
SYNE2-201ENST00000341472 ARID4BQ4LE39 1312 aaPredicted RBP32.42■■■□□ 2.78
SYNE2-201ENST00000341472 SCAPERQ9BY12 1400 aa32.42■■■□□ 2.78
SYNE2-201ENST00000341472 CCDC18Q5T9S5 1454 aa32.42■■■□□ 2.78
SYNE2-201ENST00000341472 CFAP74Q9C0B2 1584 aa32.36■■■□□ 2.77
SYNE2-201ENST00000341472 FYCO1Q9BQS8 1478 aa32.36■■■□□ 2.77
SYNE2-201ENST00000341472 PCF11O94913 1555 aaKnown RBP32.36■■■□□ 2.77
SYNE2-201ENST00000341472 FRMPD1Q5SYB0 1578 aa32.34■■■□□ 2.77
SYNE2-201ENST00000341472 LOC105371045A0A1W2PR82 267 aa32.33■■■□□ 2.77
SYNE2-201ENST00000341472 KIF14Q15058 1648 aa32.33■■■□□ 2.77
SYNE2-201ENST00000341472 CEP162Q5TB80 1403 aa32.27■■■□□ 2.76
SYNE2-201ENST00000341472 POGZQ7Z3K3 1410 aa32.27■■■□□ 2.76
SYNE2-201ENST00000341472 AFAP1Q8N556 730 aa32.27■■■□□ 2.76
SYNE2-201ENST00000341472 MAGI2Q86UL8 1455 aa32.27■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms