RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 SLC4A1APQ9BWU0 796 aaKnown RBP8.74□□□□□ -1.01
PRKDC-202ENST00000338368 HIRIP3Q9BW71 556 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-202ENST00000338368 SIN3AQ96ST3 1273 aa8.74□□□□□ -1.01
PRKDC-202ENST00000338368 CFDP1Q9UEE9 299 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-202ENST00000338368 NPM1P06748 294 aaKnown RBP eCLIP8.73□□□□□ -1.01
PRKDC-202ENST00000338368 IGF1RP08069 1367 aa8.72□□□□□ -1.01
PRKDC-202ENST00000338368 BCANQ96GW7 911 aa8.72□□□□□ -1.01
PRKDC-202ENST00000338368 EIF4G2P78344 907 aaKnown RBP eCLIP8.69□□□□□ -1.022e-6■■■■■ 49
PRKDC-202ENST00000338368 KCNH8Q96L42 1107 aa8.69□□□□□ -1.02
PRKDC-202ENST00000338368 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.69□□□□□ -1.022e-7■■□□□ 12.9
PRKDC-202ENST00000338368 ERCC6Q03468 1493 aa8.69□□□□□ -1.02
PRKDC-202ENST00000338368 FANCD2Q9BXW9 1451 aa8.68□□□□□ -1.02
PRKDC-202ENST00000338368 TIMELESSQ9UNS1 1208 aa8.67□□□□□ -1.02
PRKDC-202ENST00000338368 KDM2AQ9Y2K7 1162 aa8.67□□□□□ -1.02
PRKDC-202ENST00000338368 HNRNPUQ00839 825 aaKnown RBP eCLIP8.66□□□□□ -1.02
PRKDC-202ENST00000338368 SCAF1Q9H7N4 1312 aaKnown RBP8.66□□□□□ -1.02
PRKDC-202ENST00000338368 SETD5Q9C0A6 1442 aa8.65□□□□□ -1.02
PRKDC-202ENST00000338368 FHOD3Q2V2M9 1422 aa8.65□□□□□ -1.02
PRKDC-202ENST00000338368 FMN1Q68DA7 1419 aa8.65□□□□□ -1.02
PRKDC-202ENST00000338368 FAM9BQ8IZU0 186 aa8.65□□□□□ -1.03
PRKDC-202ENST00000338368 CFTRP13569 1480 aa8.64□□□□□ -1.03
PRKDC-202ENST00000338368 EIF4G1Q04637 1599 aaKnown RBP8.64□□□□□ -1.03
PRKDC-202ENST00000338368 FKBP8Q14318 412 aa8.64□□□□□ -1.03
PRKDC-202ENST00000338368 CHGAP10645 457 aaKnown RBP8.63□□□□□ -1.03
PRKDC-202ENST00000338368 RAB3GAP2Q9H2M9 1393 aa8.63□□□□□ -1.03
PRKDC-202ENST00000338368 ARHGAP35Q9NRY4 1499 aa8.62□□□□□ -1.03
PRKDC-202ENST00000338368 FGD5Q6ZNL6 1462 aa8.62□□□□□ -1.03
PRKDC-202ENST00000338368 RGL3Q3MIN7 710 aa8.6□□□□□ -1.03
PRKDC-202ENST00000338368 RAD54L2Q9Y4B4 1467 aa8.6□□□□□ -1.03
PRKDC-202ENST00000338368 MRS2Q9HD23 443 aa8.59□□□□□ -1.03
PRKDC-202ENST00000338368 TMC1Q8TDI8 760 aa8.59□□□□□ -1.03
PRKDC-202ENST00000338368 DHX57Q6P158 1386 aaKnown RBP8.59□□□□□ -1.03
PRKDC-202ENST00000338368 BICRAQ9NZM4 1560 aa8.59□□□□□ -1.03
PRKDC-202ENST00000338368 PPP1R15AO75807 674 aaPredicted RBP8.58□□□□□ -1.04
PRKDC-202ENST00000338368 CARMIL2Q6F5E8 1435 aa8.58□□□□□ -1.04
PRKDC-202ENST00000338368 PRXQ9BXM0 1461 aa8.58□□□□□ -1.04
PRKDC-202ENST00000338368 JPH4Q96JJ6 628 aa8.57□□□□□ -1.04
PRKDC-202ENST00000338368 KIF21BO75037 1637 aa8.57□□□□□ -1.04
PRKDC-202ENST00000338368 CARD11Q9BXL7 1154 aa8.56□□□□□ -1.04
PRKDC-202ENST00000338368 MPHOSPH9Q99550 1183 aa8.55□□□□□ -1.04
PRKDC-202ENST00000338368 SYNJ1O43426 1573 aa8.55□□□□□ -1.04
PRKDC-202ENST00000338368 SALL2Q9Y467 1007 aaPredicted RBP8.55□□□□□ -1.04
PRKDC-202ENST00000338368 HMGXB3Q12766 1538 aa8.54□□□□□ -1.04
PRKDC-202ENST00000338368 DAXXQ9UER7 740 aaPredicted RBP8.53□□□□□ -1.04
PRKDC-202ENST00000338368 PKD2Q13563 968 aa8.53□□□□□ -1.04
PRKDC-202ENST00000338368 FOXD1Q16676 465 aa8.53□□□□□ -1.04
PRKDC-202ENST00000338368 ARAP1Q96P48 1450 aa8.53□□□□□ -1.04
PRKDC-202ENST00000338368 GAPVD1Q14C86 1478 aa8.52□□□□□ -1.04
PRKDC-202ENST00000338368 ESF1Q9H501 851 aaKnown RBP8.52□□□□□ -1.05
PRKDC-202ENST00000338368 STAG3Q9UJ98 1225 aa8.52□□□□□ -1.05
PRKDC-202ENST00000338368 HSPA5P11021 654 aaKnown RBP8.52□□□□□ -1.05
PRKDC-202ENST00000338368 NESP48681 1621 aa8.51□□□□□ -1.05
PRKDC-202ENST00000338368 DCAF11Q8TEB1 546 aa8.51□□□□□ -1.05
PRKDC-202ENST00000338368 L3MBTL2Q969R5 705 aa8.51□□□□□ -1.05
PRKDC-202ENST00000338368 PHLDB1Q86UU1 1377 aa8.51□□□□□ -1.05
PRKDC-202ENST00000338368 CUX1P39880 1505 aa8.5□□□□□ -1.05
PRKDC-202ENST00000338368 HNRNPMP52272 730 aaKnown RBP eCLIP8.5□□□□□ -1.052e-6■■■■□ 24.1
PRKDC-202ENST00000338368 EFCAB2Q5VUJ9 269 aa8.5□□□□□ -1.05
PRKDC-202ENST00000338368 DNAJC5BQ9UF47 199 aa8.5□□□□□ -1.05
PRKDC-202ENST00000338368 ERICH3Q5RHP9 1530 aa8.48□□□□□ -1.05
PRKDC-202ENST00000338368 AQRO60306 1485 aaKnown RBP eCLIP8.48□□□□□ -1.058e-7■■■■□ 20.7
PRKDC-202ENST00000338368 NUP155O75694 1391 aa8.48□□□□□ -1.05
PRKDC-202ENST00000338368 CCDC18Q5T9S5 1454 aa8.48□□□□□ -1.05
PRKDC-202ENST00000338368 POLA1P09884 1462 aaPredicted RBP8.48□□□□□ -1.05
PRKDC-202ENST00000338368 ANKRD30AQ9BXX3 1397 aa8.47□□□□□ -1.05
PRKDC-202ENST00000338368 CCER2I3L3R5 266 aa8.47□□□□□ -1.05
PRKDC-202ENST00000338368 LRRC9Q6ZRR7 1453 aa8.47□□□□□ -1.05
PRKDC-202ENST00000338368 IRX6P78412 446 aaPredicted RBP8.47□□□□□ -1.05
PRKDC-202ENST00000338368 WDR43Q15061 677 aaKnown RBP eCLIP8.47□□□□□ -1.054e-6■■■■□ 26.5
PRKDC-202ENST00000338368 PEG3Q9GZU2 1588 aa8.46□□□□□ -1.05
PRKDC-202ENST00000338368 NEFMP07197 916 aa8.46□□□□□ -1.06
PRKDC-202ENST00000338368 RSPH4AQ5TD94 716 aa8.46□□□□□ -1.06
PRKDC-202ENST00000338368 TOP2BQ02880 1626 aa8.46□□□□□ -1.06
PRKDC-202ENST00000338368 CANXP27824 592 aaKnown RBP8.45□□□□□ -1.06
PRKDC-202ENST00000338368 RRBP1Q9P2E9 1410 aaKnown RBP8.45□□□□□ -1.06
PRKDC-202ENST00000338368 SUPT16HQ9Y5B9 1047 aaKnown RBP8.44□□□□□ -1.06
PRKDC-202ENST00000338368 FGD6Q6ZV73 1430 aa8.44□□□□□ -1.06
PRKDC-202ENST00000338368 TOPBP1Q92547 1522 aa8.44□□□□□ -1.06
PRKDC-202ENST00000338368 CASKIN1Q8WXD9 1431 aa8.44□□□□□ -1.06
PRKDC-202ENST00000338368 PTPRGP23470 1445 aa8.44□□□□□ -1.06
PRKDC-202ENST00000338368 SENP3-EIF4A1A0A087X0R7 540 aa8.43□□□□□ -1.06
PRKDC-202ENST00000338368 CDCA8Q53HL2 280 aa8.43□□□□□ -1.06
PRKDC-202ENST00000338368 ZNF644Q9H582 1327 aaPredicted RBP8.43□□□□□ -1.06
PRKDC-202ENST00000338368 KNSTRNQ9Y448 316 aa8.43□□□□□ -1.06
PRKDC-202ENST00000338368 GRIN2BQ13224 1484 aa8.42□□□□□ -1.06
PRKDC-202ENST00000338368 CCDC136Q96JN2 1154 aa8.42□□□□□ -1.06
PRKDC-202ENST00000338368 MYOM3Q5VTT5 1437 aa8.42□□□□□ -1.06
PRKDC-202ENST00000338368 CC2D2AQ9P2K1 1620 aa8.42□□□□□ -1.06
PRKDC-202ENST00000338368 SENP3Q9H4L4 574 aaPredicted RBP8.41□□□□□ -1.06
PRKDC-202ENST00000338368 PLPPR3Q6T4P5 718 aa8.4□□□□□ -1.06
PRKDC-202ENST00000338368 TMF1P82094 1093 aa8.4□□□□□ -1.06
PRKDC-202ENST00000338368 GGT6Q6P531 493 aa8.4□□□□□ -1.06
PRKDC-202ENST00000338368 KIF3BO15066 747 aa8.39□□□□□ -1.07
PRKDC-202ENST00000338368 NCOA2Q15596 1464 aa8.39□□□□□ -1.07
PRKDC-202ENST00000338368 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.39□□□□□ -1.07
PRKDC-202ENST00000338368 RTL5Q5HYW3 569 aaPredicted RBP8.38□□□□□ -1.07
PRKDC-202ENST00000338368 UACAQ9BZF9 1416 aa8.38□□□□□ -1.07
PRKDC-202ENST00000338368 CC2D1BQ5T0F9 858 aaKnown RBP8.38□□□□□ -1.07
PRKDC-202ENST00000338368 KANK1Q14678 1352 aa8.38□□□□□ -1.07
PRKDC-202ENST00000338368 ABCA10Q8WWZ4 1543 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms