RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 NISCHQ9Y2I1 1504 aa11.82□□□□□ -0.52
PRKDC-202ENST00000338368 DCAF8L2P0C7V8 631 aa11.23□□□□□ -0.61
PRKDC-202ENST00000338368 SUPT5HO00267 1087 aaKnown RBP10.82□□□□□ -0.68
PRKDC-202ENST00000338368 SHROOM4Q9ULL8 1493 aa10.78□□□□□ -0.68
PRKDC-202ENST00000338368 EHMT2Q96KQ7 1210 aa10.17□□□□□ -0.78
PRKDC-202ENST00000338368 FAM9AQ8IZU1 332 aaPredicted RBP10.11□□□□□ -0.79
PRKDC-202ENST00000338368 TRIM41Q8WV44 630 aa10.05□□□□□ -0.8
PRKDC-202ENST00000338368 CHIC1Q5VXU3 224 aa9.98□□□□□ -0.81
PRKDC-202ENST00000338368 PCGF6Q9BYE7 350 aa9.95□□□□□ -0.82
PRKDC-202ENST00000338368 ABCC9O60706 1549 aa9.91□□□□□ -0.82
PRKDC-202ENST00000338368 ZCCHC6Q5VYS8 1495 aaKnown RBP9.86□□□□□ -0.83
PRKDC-202ENST00000338368 APLP2Q06481 763 aa9.84□□□□□ -0.83
PRKDC-202ENST00000338368 LOC105371045A0A1W2PR82 267 aa9.82□□□□□ -0.84
PRKDC-202ENST00000338368 TTBK1Q5TCY1 1321 aaPredicted RBP9.79□□□□□ -0.84
PRKDC-202ENST00000338368 UBTFP17480 764 aaKnown RBP9.76□□□□□ -0.85
PRKDC-202ENST00000338368 RANGAP1P46060 587 aaPredicted RBP9.74□□□□□ -0.85
PRKDC-202ENST00000338368 PABPN1Q86U42 306 aaKnown RBP eCLIP9.73□□□□□ -0.85
PRKDC-202ENST00000338368 TRIM26Q12899 539 aaPredicted RBP9.68□□□□□ -0.86
PRKDC-202ENST00000338368 PPARGC1BQ86YN6 1023 aaKnown RBP9.67□□□□□ -0.86
PRKDC-202ENST00000338368 ZEB1P37275 1124 aaPredicted RBP9.65□□□□□ -0.86
PRKDC-202ENST00000338368 CCER1Q8TC90 406 aaPredicted RBP9.64□□□□□ -0.87
PRKDC-202ENST00000338368 CCDC180Q9P1Z9 1646 aa9.63□□□□□ -0.87
PRKDC-202ENST00000338368 HRCP23327 699 aa9.59□□□□□ -0.87
PRKDC-202ENST00000338368 ATP1B4Q9UN42 357 aaPredicted RBP9.57□□□□□ -0.88
PRKDC-202ENST00000338368 SCRIBQ14160 1630 aa9.52□□□□□ -0.89
PRKDC-202ENST00000338368 RSF1Q96T23 1441 aaPredicted RBP9.47□□□□□ -0.89
PRKDC-202ENST00000338368 DCAF1Q9Y4B6 1507 aa9.46□□□□□ -0.89
PRKDC-202ENST00000338368 CSRNP3Q8WYN3 585 aa9.43□□□□□ -0.9
PRKDC-202ENST00000338368 HNRNPUL2Q1KMD3 747 aaKnown RBP9.42□□□□□ -0.9
PRKDC-202ENST00000338368 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.37□□□□□ -0.91
PRKDC-202ENST00000338368 ITGAEP38570 1179 aa9.36□□□□□ -0.91
PRKDC-202ENST00000338368 NACADO15069 1562 aa9.34□□□□□ -0.91
PRKDC-202ENST00000338368 CENPBP07199 599 aaPredicted RBP9.34□□□□□ -0.91
PRKDC-202ENST00000338368 RB1CC1Q8TDY2 1594 aa9.33□□□□□ -0.92
PRKDC-202ENST00000338368 CECR2Q9BXF3 1484 aa9.32□□□□□ -0.92
PRKDC-202ENST00000338368 MYT1Q01538 1121 aa9.31□□□□□ -0.92
PRKDC-202ENST00000338368 MYO15BQ96JP2 1530 aa9.31□□□□□ -0.92
PRKDC-202ENST00000338368 PELP1Q8IZL8 1130 aaKnown RBP9.24□□□□□ -0.93
PRKDC-202ENST00000338368 YTHDC1Q96MU7 727 aaKnown RBP9.22□□□□□ -0.93
PRKDC-202ENST00000338368 FAM50AQ14320 339 aaKnown RBP9.2□□□□□ -0.94
PRKDC-202ENST00000338368 P3H3Q8IVL6 736 aa9.18□□□□□ -0.94
PRKDC-202ENST00000338368 BAZ1AQ9NRL2 1556 aaPredicted RBP9.18□□□□□ -0.94
PRKDC-202ENST00000338368 MROH2BQ7Z745 1585 aa9.17□□□□□ -0.94
PRKDC-202ENST00000338368 DIEXFQ68CQ4 756 aaKnown RBP9.17□□□□□ -0.94
PRKDC-202ENST00000338368 WRNQ14191 1432 aaPredicted RBP eCLIP9.15□□□□□ -0.94
PRKDC-202ENST00000338368 EEA1Q15075 1411 aa9.12□□□□□ -0.95
PRKDC-202ENST00000338368 BAZ1BQ9UIG0 1483 aaKnown RBP9.11□□□□□ -0.95
PRKDC-202ENST00000338368 FBLN2P98095 1184 aa9.1□□□□□ -0.95
PRKDC-202ENST00000338368 CEP162Q5TB80 1403 aa9.07□□□□□ -0.96
PRKDC-202ENST00000338368 TNIKQ9UKE5 1360 aa9.07□□□□□ -0.96
PRKDC-202ENST00000338368 CLIP1P30622 1438 aa9.07□□□□□ -0.96
PRKDC-202ENST00000338368 NEUROD1Q13562 356 aa9.07□□□□□ -0.96
PRKDC-202ENST00000338368 TRIM52Q96A61 297 aa9.07□□□□□ -0.96
PRKDC-202ENST00000338368 CCDC88BA6NC98 1476 aa9.06□□□□□ -0.96
PRKDC-202ENST00000338368 ZNF316A6NFI3 1004 aaPredicted RBP9.06□□□□□ -0.96
PRKDC-202ENST00000338368 GOLGA3Q08378 1498 aa9.05□□□□□ -0.96
PRKDC-202ENST00000338368 SOGA1O94964 1423 aa9.05□□□□□ -0.96
PRKDC-202ENST00000338368 ARID3CA6NKF2 412 aa9.03□□□□□ -0.96
PRKDC-202ENST00000338368 MYT1LQ9UL68 1186 aa9.03□□□□□ -0.96
PRKDC-202ENST00000338368 NEFLP07196 543 aa9.01□□□□□ -0.97
PRKDC-202ENST00000338368 CEP164Q9UPV0 1460 aa9□□□□□ -0.97
PRKDC-202ENST00000338368 POLR3GLQ9BT43 218 aa9□□□□□ -0.97
PRKDC-202ENST00000338368 KIF27Q86VH2 1401 aa8.98□□□□□ -0.97
PRKDC-202ENST00000338368 CDK11AQ9UQ88 783 aaPredicted RBP8.96□□□□□ -0.98
PRKDC-202ENST00000338368 CNGB1Q14028 1251 aaPredicted RBP8.95□□□□□ -0.98
PRKDC-202ENST00000338368 ATAD2BQ9ULI0 1458 aa8.95□□□□□ -0.98
PRKDC-202ENST00000338368 TOP2AP11388 1531 aaKnown RBP8.93□□□□□ -0.98
PRKDC-202ENST00000338368 ZNF777Q9ULD5 760 aaPredicted RBP8.92□□□□□ -0.98
PRKDC-202ENST00000338368 ABCC8Q09428 1581 aa8.92□□□□□ -0.98
PRKDC-202ENST00000338368 WIZO95785 1651 aa8.92□□□□□ -0.98
PRKDC-202ENST00000338368 SMARCA2P51531 1590 aa8.91□□□□□ -0.98
PRKDC-202ENST00000338368 MTUS2Q5JR59 1369 aa8.91□□□□□ -0.98
PRKDC-202ENST00000338368 GTF3C3Q9Y5Q9 886 aa8.89□□□□□ -0.99
PRKDC-202ENST00000338368 CHIC2Q9UKJ5 165 aa8.89□□□□□ -0.99
PRKDC-202ENST00000338368 CHMP7Q8WUX9 453 aaPredicted RBP8.88□□□□□ -0.99
PRKDC-202ENST00000338368 CARMIL1Q5VZK9 1371 aa8.88□□□□□ -0.99
PRKDC-202ENST00000338368 ZNF326Q5BKZ1 582 aaKnown RBP8.88□□□□□ -0.99
PRKDC-202ENST00000338368 CUX2O14529 1486 aa8.88□□□□□ -0.99
PRKDC-202ENST00000338368 ACIN1Q9UKV3 1341 aaKnown RBP8.87□□□□□ -0.99
PRKDC-202ENST00000338368 CADPSQ9ULU8 1353 aa8.86□□□□□ -0.99
PRKDC-202ENST00000338368 ANP32CO43423 234 aa8.86□□□□□ -0.99
PRKDC-202ENST00000338368 TONSLQ96HA7 1378 aa8.84□□□□□ -0.99
PRKDC-202ENST00000338368 VPS8Q8N3P4 1428 aa8.84□□□□□ -0.99
PRKDC-202ENST00000338368 RUSC2Q8N2Y8 1516 aa8.84□□□□□ -0.99
PRKDC-202ENST00000338368 SMARCA4P51532 1647 aa8.84□□□□□ -0.99
PRKDC-202ENST00000338368 KANK4Q5T7N3 995 aaPredicted RBP8.82□□□□□ -1
PRKDC-202ENST00000338368 ERICH6Q7L0X2 663 aa8.82□□□□□ -1
PRKDC-202ENST00000338368 DDX10Q13206 875 aaKnown RBP8.81□□□□□ -1
PRKDC-202ENST00000338368 TDRD9Q8NDG6 1382 aaKnown RBP8.8□□□□□ -1
PRKDC-202ENST00000338368 TSPY4P0CV99 314 aa8.79□□□□□ -1
PRKDC-202ENST00000338368 TSPY10P0CW01 314 aa8.79□□□□□ -1
PRKDC-202ENST00000338368 RRP7BPQ9NSQ0 103 aa8.79□□□□□ -1
PRKDC-202ENST00000338368 MIER1Q8N108 512 aa8.78□□□□□ -1
PRKDC-202ENST00000338368 NCAPD3P42695 1498 aa8.77□□□□□ -1
PRKDC-202ENST00000338368 CLSPNQ9HAW4 1339 aa8.77□□□□□ -1.01
PRKDC-202ENST00000338368 CCNB3Q8WWL7 1395 aa8.77□□□□□ -1.01
PRKDC-202ENST00000338368 FHAD1B1AJZ9 1412 aa8.77□□□□□ -1.01
PRKDC-202ENST00000338368 PLEKHD1A6NEE1 506 aa8.77□□□□□ -1.01
PRKDC-202ENST00000338368 PDS5BQ9NTI5 1447 aa8.77□□□□□ -1.01
PRKDC-202ENST00000338368 RAPGEF2Q9Y4G8 1499 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms