RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 CEP170Q5SW79 1584 aa19.49■□□□□ 0.71
SPTLC1-202ENST00000337841 KIAA0586Q9BVV6 1533 aa19.48■□□□□ 0.71
SPTLC1-202ENST00000337841 CLASP1Q7Z460 1538 aa19.46■□□□□ 0.71
SPTLC1-202ENST00000337841 UBTFP17480 764 aaKnown RBP19.46■□□□□ 0.71
SPTLC1-202ENST00000337841 EHMT2Q96KQ7 1210 aa19.46■□□□□ 0.71
SPTLC1-202ENST00000337841 KIF21BO75037 1637 aa19.38■□□□□ 0.69
SPTLC1-202ENST00000337841 GOLGA3Q08378 1498 aa19.38■□□□□ 0.69
SPTLC1-202ENST00000337841 PRG4Q92954 1404 aaPredicted RBP19.37■□□□□ 0.69
SPTLC1-202ENST00000337841 ARHGEF11O15085 1522 aa19.34■□□□□ 0.69
SPTLC1-202ENST00000337841 CYB5RLQ6IPT4 315 aa19.33■□□□□ 0.68
SPTLC1-202ENST00000337841 CARMIL2Q6F5E8 1435 aa19.33■□□□□ 0.68
SPTLC1-202ENST00000337841 IQGAP2Q13576 1575 aa19.32■□□□□ 0.68
SPTLC1-202ENST00000337841 RANGAP1P46060 587 aaPredicted RBP19.3■□□□□ 0.68
SPTLC1-202ENST00000337841 SHROOM2Q13796 1616 aa19.29■□□□□ 0.68
SPTLC1-202ENST00000337841 RIMBP3CA6NJZ7 1639 aa19.27■□□□□ 0.68
SPTLC1-202ENST00000337841 RIMBP3BA6NNM3 1639 aa19.27■□□□□ 0.68
SPTLC1-202ENST00000337841 RIMBP3Q9UFD9 1639 aa19.27■□□□□ 0.68
SPTLC1-202ENST00000337841 LOC105371045A0A1W2PR82 267 aa19.27■□□□□ 0.68
SPTLC1-202ENST00000337841 UGGT2Q9NYU1 1516 aa19.25■□□□□ 0.67
SPTLC1-202ENST00000337841 TTBK1Q5TCY1 1321 aaPredicted RBP19.25■□□□□ 0.67
SPTLC1-202ENST00000337841 TNIKQ9UKE5 1360 aa19.23■□□□□ 0.67
SPTLC1-202ENST00000337841 P3H3Q8IVL6 736 aa19.23■□□□□ 0.67
SPTLC1-202ENST00000337841 CTTNBP2Q8WZ74 1663 aa19.22■□□□□ 0.67
SPTLC1-202ENST00000337841 PTPRGP23470 1445 aa19.22■□□□□ 0.67
SPTLC1-202ENST00000337841 ERCC6L2Q5T890 1561 aa19.22■□□□□ 0.67
SPTLC1-202ENST00000337841 ARAP1Q96P48 1450 aa19.2■□□□□ 0.66
SPTLC1-202ENST00000337841 DISP1Q96F81 1524 aa19.2■□□□□ 0.66
SPTLC1-202ENST00000337841 NPM1P06748 294 aaKnown RBP eCLIP19.12■□□□□ 0.65
SPTLC1-202ENST00000337841 KIAA0556O60303 1618 aa19.11■□□□□ 0.65
SPTLC1-202ENST00000337841 EFCAB5A4FU69 1503 aa19.08■□□□□ 0.64
SPTLC1-202ENST00000337841 CLIP1P30622 1438 aa19.07■□□□□ 0.64
SPTLC1-202ENST00000337841 UACAQ9BZF9 1416 aa19.06■□□□□ 0.64
SPTLC1-202ENST00000337841 FHOD3Q2V2M9 1422 aa19.05■□□□□ 0.64
SPTLC1-202ENST00000337841 SAMD9Q5K651 1589 aa19.05■□□□□ 0.64
SPTLC1-202ENST00000337841 ARHGAP35Q9NRY4 1499 aa19.03■□□□□ 0.64
SPTLC1-202ENST00000337841 CEP162Q5TB80 1403 aa19■□□□□ 0.63
SPTLC1-202ENST00000337841 ATP1B4Q9UN42 357 aaPredicted RBP18.99■□□□□ 0.63
SPTLC1-202ENST00000337841 FMN1Q68DA7 1419 aa18.99■□□□□ 0.63
SPTLC1-202ENST00000337841 UHRF1BP1LA0JNW5 1464 aa18.98■□□□□ 0.63
SPTLC1-202ENST00000337841 PLB1Q6P1J6 1458 aa18.97■□□□□ 0.63
SPTLC1-202ENST00000337841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.94■□□□□ 0.62
SPTLC1-202ENST00000337841 HNRNPUL2Q1KMD3 747 aaKnown RBP18.94■□□□□ 0.62
SPTLC1-202ENST00000337841 ABCC2Q92887 1545 aa18.94■□□□□ 0.62
SPTLC1-202ENST00000337841 ARID3CA6NKF2 412 aa18.92■□□□□ 0.62
SPTLC1-202ENST00000337841 ABCA8O94911 1581 aa18.92■□□□□ 0.62
SPTLC1-202ENST00000337841 ADCY10Q96PN6 1610 aa18.9■□□□□ 0.62
SPTLC1-202ENST00000337841 TRHP20396 242 aaPredicted RBP18.88■□□□□ 0.61
SPTLC1-202ENST00000337841 KDM5BQ9UGL1 1544 aa18.88■□□□□ 0.61
SPTLC1-202ENST00000337841 PLEKHD1A6NEE1 506 aa18.85■□□□□ 0.61
SPTLC1-202ENST00000337841 RAPGEF6Q8TEU7 1601 aa18.85■□□□□ 0.61
SPTLC1-202ENST00000337841 ATP10BO94823 1461 aa18.84■□□□□ 0.61
SPTLC1-202ENST00000337841 CDK11AQ9UQ88 783 aaPredicted RBP18.84■□□□□ 0.61
SPTLC1-202ENST00000337841 CASKIN1Q8WXD9 1431 aa18.83■□□□□ 0.61
SPTLC1-202ENST00000337841 NUP153P49790 1475 aaKnown RBP18.83■□□□□ 0.6
SPTLC1-202ENST00000337841 ASXL2Q76L83 1435 aa18.81■□□□□ 0.6
SPTLC1-202ENST00000337841 KCNH8Q96L42 1107 aa18.8■□□□□ 0.6
SPTLC1-202ENST00000337841 FAM69CQ0P6D2 419 aa18.79■□□□□ 0.6
SPTLC1-202ENST00000337841 MAPKBP1O60336 1514 aa18.79■□□□□ 0.6
SPTLC1-202ENST00000337841 VPS8Q8N3P4 1428 aa18.77■□□□□ 0.6
SPTLC1-202ENST00000337841 FYCO1Q9BQS8 1478 aa18.76■□□□□ 0.59
SPTLC1-202ENST00000337841 EPRSP07814 1512 aaKnown RBP18.75■□□□□ 0.59
SPTLC1-202ENST00000337841 ZCCHC11Q5TAX3 1644 aaKnown RBP18.75■□□□□ 0.59
SPTLC1-202ENST00000337841 HECW1Q76N89 1606 aa18.75■□□□□ 0.59
SPTLC1-202ENST00000337841 APLP2Q06481 763 aa18.75■□□□□ 0.59
SPTLC1-202ENST00000337841 PLPPR3Q6T4P5 718 aa18.74■□□□□ 0.59
SPTLC1-202ENST00000337841 ABCC10Q5T3U5 1492 aa18.72■□□□□ 0.59
SPTLC1-202ENST00000337841 WDR7Q9Y4E6 1490 aa18.72■□□□□ 0.59
SPTLC1-202ENST00000337841 CCDC18Q5T9S5 1454 aa18.71■□□□□ 0.59
SPTLC1-202ENST00000337841 PCF11O94913 1555 aaKnown RBP18.7■□□□□ 0.58
SPTLC1-202ENST00000337841 CDK13Q14004 1512 aaKnown RBP18.69■□□□□ 0.58
SPTLC1-202ENST00000337841 MTUS2Q5JR59 1369 aa18.63■□□□□ 0.57
SPTLC1-202ENST00000337841 TROQ12816 1431 aaPredicted RBP18.63■□□□□ 0.57
SPTLC1-202ENST00000337841 FOXD1Q16676 465 aa18.61■□□□□ 0.57
SPTLC1-202ENST00000337841 GLI2P10070 1586 aa18.6■□□□□ 0.57
SPTLC1-202ENST00000337841 DIP2BQ9P265 1576 aa18.59■□□□□ 0.57
SPTLC1-202ENST00000337841 CD109Q6YHK3 1445 aa18.59■□□□□ 0.57
SPTLC1-202ENST00000337841 MAP3K1Q13233 1512 aa18.57■□□□□ 0.56
SPTLC1-202ENST00000337841 KANK4Q5T7N3 995 aaPredicted RBP18.55■□□□□ 0.56
SPTLC1-202ENST00000337841 LRRIQ1Q96JM4 1722 aa18.53■□□□□ 0.56
SPTLC1-202ENST00000337841 TIAM1Q13009 1591 aa18.51■□□□□ 0.55
SPTLC1-202ENST00000337841 EFCAB2Q5VUJ9 269 aa18.51■□□□□ 0.55
SPTLC1-202ENST00000337841 MAGI3Q5TCQ9 1506 aa18.5■□□□□ 0.55
SPTLC1-202ENST00000337841 KIF13AQ9H1H9 1805 aa18.5■□□□□ 0.55
SPTLC1-202ENST00000337841 LRRC9Q6ZRR7 1453 aa18.5■□□□□ 0.55
SPTLC1-202ENST00000337841 TEX14Q8IWB6 1497 aa18.49■□□□□ 0.55
SPTLC1-202ENST00000337841 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.49■□□□□ 0.55
SPTLC1-202ENST00000337841 CCNB3Q8WWL7 1395 aa18.48■□□□□ 0.55
SPTLC1-202ENST00000337841 KIF14Q15058 1648 aa18.48■□□□□ 0.55
SPTLC1-202ENST00000337841 ABCA9Q8IUA7 1624 aa18.48■□□□□ 0.55
SPTLC1-202ENST00000337841 PLCH2O75038 1416 aa18.48■□□□□ 0.55
SPTLC1-202ENST00000337841 PHLDB1Q86UU1 1377 aa18.47■□□□□ 0.55
SPTLC1-202ENST00000337841 EHBP1L1Q8N3D4 1523 aa18.47■□□□□ 0.55
SPTLC1-202ENST00000337841 MAP3K4Q9Y6R4 1608 aa18.46■□□□□ 0.55
SPTLC1-202ENST00000337841 CFAP43Q8NDM7 1665 aa18.46■□□□□ 0.55
SPTLC1-202ENST00000337841 CFDP1Q9UEE9 299 aaPredicted RBP18.45■□□□□ 0.54
SPTLC1-202ENST00000337841 ZNF777Q9ULD5 760 aaPredicted RBP18.42■□□□□ 0.54
SPTLC1-202ENST00000337841 NCOA2Q15596 1464 aa18.41■□□□□ 0.54
SPTLC1-202ENST00000337841 PPARGC1BQ86YN6 1023 aaKnown RBP18.41■□□□□ 0.54
SPTLC1-202ENST00000337841 TSPOAP1O95153 1857 aa18.41■□□□□ 0.54
SPTLC1-202ENST00000337841 NEO1Q92859 1461 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms