RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 NISCHQ9Y2I1 1504 aa28.16■■■□□ 2.1
SPTLC1-202ENST00000337841 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
SPTLC1-202ENST00000337841 ABCC9O60706 1549 aa24.17■■□□□ 1.46
SPTLC1-202ENST00000337841 DCAF8L2P0C7V8 631 aa23.66■■□□□ 1.38
SPTLC1-202ENST00000337841 AEBP2Q6ZN18 517 aaPredicted RBP23.52■■□□□ 1.36
SPTLC1-202ENST00000337841 ZCCHC6Q5VYS8 1495 aaKnown RBP23.45■■□□□ 1.34
SPTLC1-202ENST00000337841 NACADO15069 1562 aa23.37■■□□□ 1.33
SPTLC1-202ENST00000337841 RB1CC1Q8TDY2 1594 aa23.32■■□□□ 1.32
SPTLC1-202ENST00000337841 MYO15BQ96JP2 1530 aa23.3■■□□□ 1.32
SPTLC1-202ENST00000337841 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
SPTLC1-202ENST00000337841 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
SPTLC1-202ENST00000337841 PABPN1Q86U42 306 aaKnown RBP eCLIP22.73■■□□□ 1.23
SPTLC1-202ENST00000337841 SCRIBQ14160 1630 aa22.69■■□□□ 1.22
SPTLC1-202ENST00000337841 UNC13AQ9UPW8 1703 aa22.59■■□□□ 1.21
SPTLC1-202ENST00000337841 BICRAQ9NZM4 1560 aa22.54■■□□□ 1.2
SPTLC1-202ENST00000337841 SHROOM4Q9ULL8 1493 aa22.47■■□□□ 1.19
SPTLC1-202ENST00000337841 DNAJC5BQ9UF47 199 aa22.02■■□□□ 1.12
SPTLC1-202ENST00000337841 EIF4G1Q04637 1599 aaKnown RBP21.95■■□□□ 1.11
SPTLC1-202ENST00000337841 CECR2Q9BXF3 1484 aa21.91■■□□□ 1.1
SPTLC1-202ENST00000337841 BAZ1AQ9NRL2 1556 aaPredicted RBP21.8■■□□□ 1.08
SPTLC1-202ENST00000337841 CC2D2AQ9P2K1 1620 aa21.8■■□□□ 1.08
SPTLC1-202ENST00000337841 SMARCA4P51532 1647 aa21.73■■□□□ 1.07
SPTLC1-202ENST00000337841 MROH2BQ7Z745 1585 aa21.69■■□□□ 1.06
SPTLC1-202ENST00000337841 ATAD2BQ9ULI0 1458 aa21.64■■□□□ 1.05
SPTLC1-202ENST00000337841 NCAPD3P42695 1498 aa21.61■■□□□ 1.05
SPTLC1-202ENST00000337841 SMARCA2P51531 1590 aa21.6■■□□□ 1.05
SPTLC1-202ENST00000337841 RSF1Q96T23 1441 aaPredicted RBP21.59■■□□□ 1.05
SPTLC1-202ENST00000337841 PEG3Q9GZU2 1588 aa21.51■■□□□ 1.03
SPTLC1-202ENST00000337841 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
SPTLC1-202ENST00000337841 HMGXB3Q12766 1538 aa21.43■■□□□ 1.02
SPTLC1-202ENST00000337841 WIZO95785 1651 aa21.4■■□□□ 1.02
SPTLC1-202ENST00000337841 SUPT5HO00267 1087 aaKnown RBP21.37■■□□□ 1.01
SPTLC1-202ENST00000337841 TOP2AP11388 1531 aaKnown RBP21.24■□□□□ 0.99
SPTLC1-202ENST00000337841 CCDC88BA6NC98 1476 aa21.06■□□□□ 0.96
SPTLC1-202ENST00000337841 CADPSQ9ULU8 1353 aa21.03■□□□□ 0.96
SPTLC1-202ENST00000337841 NESP48681 1621 aa20.95■□□□□ 0.94
SPTLC1-202ENST00000337841 LAMC3Q9Y6N6 1575 aa20.93■□□□□ 0.94
SPTLC1-202ENST00000337841 CFTRP13569 1480 aa20.9■□□□□ 0.94
SPTLC1-202ENST00000337841 PDS5BQ9NTI5 1447 aa20.89■□□□□ 0.94
SPTLC1-202ENST00000337841 ERCC6Q03468 1493 aa20.85■□□□□ 0.93
SPTLC1-202ENST00000337841 FANCD2Q9BXW9 1451 aa20.74■□□□□ 0.91
SPTLC1-202ENST00000337841 CEP164Q9UPV0 1460 aa20.68■□□□□ 0.9
SPTLC1-202ENST00000337841 KIF21AQ7Z4S6 1674 aa20.59■□□□□ 0.89
SPTLC1-202ENST00000337841 MRC2Q9UBG0 1479 aa20.59■□□□□ 0.89
SPTLC1-202ENST00000337841 PRDM2Q13029 1718 aa20.53■□□□□ 0.88
SPTLC1-202ENST00000337841 ABCC8Q09428 1581 aa20.5■□□□□ 0.87
SPTLC1-202ENST00000337841 CUX2O14529 1486 aa20.5■□□□□ 0.87
SPTLC1-202ENST00000337841 THOC2Q8NI27 1593 aaKnown RBP20.47■□□□□ 0.87
SPTLC1-202ENST00000337841 URB2Q14146 1524 aaKnown RBP20.47■□□□□ 0.87
SPTLC1-202ENST00000337841 WDR62O43379 1518 aa20.45■□□□□ 0.86
SPTLC1-202ENST00000337841 TOPBP1Q92547 1522 aa20.41■□□□□ 0.86
SPTLC1-202ENST00000337841 DNMBPQ6XZF7 1577 aa20.37■□□□□ 0.85
SPTLC1-202ENST00000337841 WRNQ14191 1432 aaPredicted RBP eCLIP20.36■□□□□ 0.85
SPTLC1-202ENST00000337841 CUX1P39880 1505 aa20.32■□□□□ 0.84
SPTLC1-202ENST00000337841 PHF23Q9BUL5 403 aaPredicted RBP20.31■□□□□ 0.84
SPTLC1-202ENST00000337841 SOGA1O94964 1423 aa20.27■□□□□ 0.83
SPTLC1-202ENST00000337841 IFT140Q96RY7 1462 aa20.26■□□□□ 0.83
SPTLC1-202ENST00000337841 POLA1P09884 1462 aaPredicted RBP20.24■□□□□ 0.83
SPTLC1-202ENST00000337841 FGD5Q6ZNL6 1462 aa20.24■□□□□ 0.83
SPTLC1-202ENST00000337841 TRIM41Q8WV44 630 aa20.19■□□□□ 0.82
SPTLC1-202ENST00000337841 TOP2BQ02880 1626 aa20.19■□□□□ 0.82
SPTLC1-202ENST00000337841 RAD54L2Q9Y4B4 1467 aa20.18■□□□□ 0.82
SPTLC1-202ENST00000337841 SYNJ1O43426 1573 aa20.17■□□□□ 0.82
SPTLC1-202ENST00000337841 BIVM-ERCC5R4GMW8 1640 aa20.14■□□□□ 0.81
SPTLC1-202ENST00000337841 TDRD9Q8NDG6 1382 aaKnown RBP20.12■□□□□ 0.81
SPTLC1-202ENST00000337841 SENP3Q9H4L4 574 aaPredicted RBP20.1■□□□□ 0.81
SPTLC1-202ENST00000337841 ZNF608Q9ULD9 1512 aaPredicted RBP20.1■□□□□ 0.81
SPTLC1-202ENST00000337841 TARBP1Q13395 1621 aaKnown RBP20.09■□□□□ 0.81
SPTLC1-202ENST00000337841 AQRO60306 1485 aaKnown RBP eCLIP20.08■□□□□ 0.81
SPTLC1-202ENST00000337841 ABCA10Q8WWZ4 1543 aa20.07■□□□□ 0.8
SPTLC1-202ENST00000337841 GAPVD1Q14C86 1478 aa19.99■□□□□ 0.79
SPTLC1-202ENST00000337841 WDR97A6NE52 1622 aa19.97■□□□□ 0.79
SPTLC1-202ENST00000337841 GRIN2BQ13224 1484 aa19.96■□□□□ 0.79
SPTLC1-202ENST00000337841 KIF27Q86VH2 1401 aa19.95■□□□□ 0.78
SPTLC1-202ENST00000337841 EIF4G3O43432 1585 aaKnown RBP19.94■□□□□ 0.78
SPTLC1-202ENST00000337841 FBLN2P98095 1184 aa19.91■□□□□ 0.78
SPTLC1-202ENST00000337841 CHMP7Q8WUX9 453 aaPredicted RBP19.89■□□□□ 0.77
SPTLC1-202ENST00000337841 OSCARQ8IYS5 282 aa19.86■□□□□ 0.77
SPTLC1-202ENST00000337841 ABCA5Q8WWZ7 1642 aa19.86■□□□□ 0.77
SPTLC1-202ENST00000337841 IGF1RP08069 1367 aa19.85■□□□□ 0.77
SPTLC1-202ENST00000337841 SNAPC4Q5SXM2 1469 aa19.85■□□□□ 0.77
SPTLC1-202ENST00000337841 MAGI1Q96QZ7 1491 aaPredicted RBP19.85■□□□□ 0.77
SPTLC1-202ENST00000337841 ERICH3Q5RHP9 1530 aa19.81■□□□□ 0.76
SPTLC1-202ENST00000337841 FHAD1B1AJZ9 1412 aa19.78■□□□□ 0.76
SPTLC1-202ENST00000337841 RUSC2Q8N2Y8 1516 aa19.77■□□□□ 0.76
SPTLC1-202ENST00000337841 SYNJ2O15056 1496 aa19.77■□□□□ 0.76
SPTLC1-202ENST00000337841 CSRNP3Q8WYN3 585 aa19.76■□□□□ 0.75
SPTLC1-202ENST00000337841 CARMIL1Q5VZK9 1371 aa19.75■□□□□ 0.75
SPTLC1-202ENST00000337841 FAM9AQ8IZU1 332 aaPredicted RBP19.75■□□□□ 0.75
SPTLC1-202ENST00000337841 PBRM1Q86U86 1689 aa19.75■□□□□ 0.75
SPTLC1-202ENST00000337841 EEA1Q15075 1411 aa19.74■□□□□ 0.75
SPTLC1-202ENST00000337841 DNAJC5Q9H3Z4 198 aa19.7■□□□□ 0.74
SPTLC1-202ENST00000337841 ADAMTS12P58397 1594 aa19.66■□□□□ 0.74
SPTLC1-202ENST00000337841 GRIN2AQ12879 1464 aa19.66■□□□□ 0.74
SPTLC1-202ENST00000337841 CUL7Q14999 1698 aa19.62■□□□□ 0.73
SPTLC1-202ENST00000337841 RAPGEF2Q9Y4G8 1499 aa19.61■□□□□ 0.73
SPTLC1-202ENST00000337841 CHD1O14646 1710 aa19.6■□□□□ 0.73
SPTLC1-202ENST00000337841 PRXQ9BXM0 1461 aa19.57■□□□□ 0.72
SPTLC1-202ENST00000337841 NUP160Q12769 1436 aa19.56■□□□□ 0.72
SPTLC1-202ENST00000337841 JPH4Q96JJ6 628 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms