RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 HMGXB3Q12766 1538 aa34.12■■■■□ 3.05
SOX1-201ENST00000330949 PPP1R15AO75807 674 aaPredicted RBP34.1■■■■□ 3.05
SOX1-201ENST00000330949 ARAP1Q96P48 1450 aa34.08■■■■□ 3.05
SOX1-201ENST00000330949 MAPKBP1O60336 1514 aa34.07■■■■□ 3.05
SOX1-201ENST00000330949 CCNB3Q8WWL7 1395 aa34.07■■■■□ 3.04
SOX1-201ENST00000330949 CFTRP13569 1480 aa34.05■■■■□ 3.04
SOX1-201ENST00000330949 ANP32CO43423 234 aa34.03■■■■□ 3.04
SOX1-201ENST00000330949 KIF27Q86VH2 1401 aa34.01■■■■□ 3.04
SOX1-201ENST00000330949 DEKP35659 375 aaKnown RBP34■■■■□ 3.03
SOX1-201ENST00000330949 WDR97A6NE52 1622 aa33.99■■■■□ 3.03
SOX1-201ENST00000330949 RAB3GAP2Q9H2M9 1393 aa33.97■■■■□ 3.03
SOX1-201ENST00000330949 ERICH3Q5RHP9 1530 aa33.96■■■■□ 3.03
SOX1-201ENST00000330949 TIMELESSQ9UNS1 1208 aa33.88■■■■□ 3.01
SOX1-201ENST00000330949 ERICH6BQ5W0A0 696 aa33.86■■■■□ 3.01
SOX1-201ENST00000330949 ATP1B4Q9UN42 357 aaPredicted RBP33.86■■■■□ 3.01
SOX1-201ENST00000330949 P3H3Q8IVL6 736 aa33.83■■■■□ 3.01
SOX1-201ENST00000330949 ARHGAP35Q9NRY4 1499 aa33.81■■■■□ 3
SOX1-201ENST00000330949 IGF1RP08069 1367 aa33.79■■■■□ 3
SOX1-201ENST00000330949 SETD5Q9C0A6 1442 aa33.77■■■■□ 3
SOX1-201ENST00000330949 CADPSQ9ULU8 1353 aa33.74■■■□□ 2.99
SOX1-201ENST00000330949 SIN3AQ96ST3 1273 aa33.7■■■□□ 2.99
SOX1-201ENST00000330949 PPP4R2Q9NY27 417 aa33.7■■■□□ 2.98
SOX1-201ENST00000330949 IRX6P78412 446 aaPredicted RBP33.67■■■□□ 2.98
SOX1-201ENST00000330949 HNRNPUQ00839 825 aaKnown RBP eCLIP33.66■■■□□ 2.98
SOX1-201ENST00000330949 FGD5Q6ZNL6 1462 aa33.64■■■□□ 2.98
SOX1-201ENST00000330949 CARMIL1Q5VZK9 1371 aa33.63■■■□□ 2.97
SOX1-201ENST00000330949 NOP58Q9Y2X3 529 aaKnown RBP33.62■■■□□ 2.97
SOX1-201ENST00000330949 HIRIP3Q9BW71 556 aaPredicted RBP33.62■■■□□ 2.97
SOX1-201ENST00000330949 FAM50AQ14320 339 aaKnown RBP33.61■■■□□ 2.97
SOX1-201ENST00000330949 ANO8Q9HCE9 1232 aaPredicted RBP33.53■■■□□ 2.96
SOX1-201ENST00000330949 CC2D2AQ9P2K1 1620 aa33.52■■■□□ 2.96
SOX1-201ENST00000330949 NBR1Q14596 966 aa33.49■■■□□ 2.95
SOX1-201ENST00000330949 MAP3K1Q13233 1512 aa33.49■■■□□ 2.95
SOX1-201ENST00000330949 RAD54L2Q9Y4B4 1467 aa33.48■■■□□ 2.95
SOX1-201ENST00000330949 PRDM2Q13029 1718 aa33.45■■■□□ 2.95
SOX1-201ENST00000330949 NESP48681 1621 aa33.44■■■□□ 2.94
SOX1-201ENST00000330949 FANCD2Q9BXW9 1451 aa33.43■■■□□ 2.94
SOX1-201ENST00000330949 TIAM1Q13009 1591 aa33.43■■■□□ 2.94
SOX1-201ENST00000330949 PAK3O75914 559 aaPredicted RBP33.36■■■□□ 2.93
SOX1-201ENST00000330949 RTL5Q5HYW3 569 aaPredicted RBP33.36■■■□□ 2.93
SOX1-201ENST00000330949 PHLDB1Q86UU1 1377 aa33.36■■■□□ 2.93
SOX1-201ENST00000330949 TONSLQ96HA7 1378 aa33.35■■■□□ 2.93
SOX1-201ENST00000330949 B4GALNT3Q6L9W6 998 aa33.34■■■□□ 2.93
SOX1-201ENST00000330949 DNAJC5BQ9UF47 199 aa33.31■■■□□ 2.92
SOX1-201ENST00000330949 LRRC9Q6ZRR7 1453 aa33.3■■■□□ 2.92
SOX1-201ENST00000330949 FHOD3Q2V2M9 1422 aa33.29■■■□□ 2.92
SOX1-201ENST00000330949 SALL2Q9Y467 1007 aaPredicted RBP33.29■■■□□ 2.92
SOX1-201ENST00000330949 ANP32AP39687 249 aaKnown RBP33.25■■■□□ 2.91
SOX1-201ENST00000330949 FHAD1B1AJZ9 1412 aa33.23■■■□□ 2.91
SOX1-201ENST00000330949 IPO9Q96P70 1041 aaKnown RBP33.23■■■□□ 2.91
SOX1-201ENST00000330949 POLA1P09884 1462 aaPredicted RBP33.23■■■□□ 2.91
SOX1-201ENST00000330949 TOPBP1Q92547 1522 aa33.19■■■□□ 2.9
SOX1-201ENST00000330949 ZBTB47Q9UFB7 747 aaPredicted RBP33.15■■■□□ 2.9
SOX1-201ENST00000330949 ZBED9Q6R2W3 1325 aa33.15■■■□□ 2.9
SOX1-201ENST00000330949 PCF11O94913 1555 aaKnown RBP33.15■■■□□ 2.9
SOX1-201ENST00000330949 TDRD9Q8NDG6 1382 aaKnown RBP33.11■■■□□ 2.89
SOX1-201ENST00000330949 DNMBPQ6XZF7 1577 aa33.11■■■□□ 2.89
SOX1-201ENST00000330949 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.1■■■□□ 2.89
SOX1-201ENST00000330949 ABCA10Q8WWZ4 1543 aa33.09■■■□□ 2.89
SOX1-201ENST00000330949 IL27Q8NEV9 243 aa33.08■■■□□ 2.89
SOX1-201ENST00000330949 CFAP43Q8NDM7 1665 aa33.07■■■□□ 2.89
SOX1-201ENST00000330949 WASHC2AQ641Q2 1341 aa33.05■■■□□ 2.88
SOX1-201ENST00000330949 NCOA2Q15596 1464 aa33.02■■■□□ 2.88
SOX1-201ENST00000330949 CNTLNQ9NXG0 1405 aa33.01■■■□□ 2.87
SOX1-201ENST00000330949 UACAQ9BZF9 1416 aa33■■■□□ 2.87
SOX1-201ENST00000330949 URB2Q14146 1524 aaKnown RBP32.99■■■□□ 2.87
SOX1-201ENST00000330949 CCDC18Q5T9S5 1454 aa32.97■■■□□ 2.87
SOX1-201ENST00000330949 CCDC184Q52MB2 194 aa32.97■■■□□ 2.87
SOX1-201ENST00000330949 FAM9BQ8IZU0 186 aa32.97■■■□□ 2.87
SOX1-201ENST00000330949 CCDC136Q96JN2 1154 aa32.95■■■□□ 2.86
SOX1-201ENST00000330949 KDM5BQ9UGL1 1544 aa32.94■■■□□ 2.86
SOX1-201ENST00000330949 ARID3CA6NKF2 412 aa32.93■■■□□ 2.86
SOX1-201ENST00000330949 MRS2Q9HD23 443 aa32.93■■■□□ 2.86
SOX1-201ENST00000330949 USP35Q9P2H5 1018 aa32.93■■■□□ 2.86
SOX1-201ENST00000330949 HSPA5P11021 654 aaKnown RBP32.92■■■□□ 2.86
SOX1-201ENST00000330949 PRKRIP1Q9H875 184 aaPredicted RBP32.92■■■□□ 2.86
SOX1-201ENST00000330949 UBE2Q2Q8WVN8 375 aa32.9■■■□□ 2.86
SOX1-201ENST00000330949 RTN4Q9NQC3 1192 aaKnown RBP32.9■■■□□ 2.86
SOX1-201ENST00000330949 CASKIN1Q8WXD9 1431 aa32.89■■■□□ 2.86
SOX1-201ENST00000330949 MTUS2Q5JR59 1369 aa32.89■■■□□ 2.86
SOX1-201ENST00000330949 SMG6Q86US8 1419 aaKnown RBP32.87■■■□□ 2.85
SOX1-201ENST00000330949 HFM1A2PYH4 1435 aa32.86■■■□□ 2.85
SOX1-201ENST00000330949 FYCO1Q9BQS8 1478 aa32.85■■■□□ 2.85
SOX1-201ENST00000330949 EIF4G2P78344 907 aaKnown RBP eCLIP32.85■■■□□ 2.85
SOX1-201ENST00000330949 C11orf95C9JLR9 678 aaPredicted RBP32.84■■■□□ 2.85
SOX1-201ENST00000330949 CHIC2Q9UKJ5 165 aa32.82■■■□□ 2.84
SOX1-201ENST00000330949 RNF123Q5XPI4 1314 aa32.82■■■□□ 2.84
SOX1-201ENST00000330949 PTPN23Q9H3S7 1636 aa32.8■■■□□ 2.84
SOX1-201ENST00000330949 AKNAQ7Z591 1439 aa32.78■■■□□ 2.84
SOX1-201ENST00000330949 WASHC2CQ9Y4E1 1318 aa32.77■■■□□ 2.84
SOX1-201ENST00000330949 EFCAB5A4FU69 1503 aa32.77■■■□□ 2.84
SOX1-201ENST00000330949 CUL7Q14999 1698 aa32.77■■■□□ 2.84
SOX1-201ENST00000330949 ZBTB4Q9P1Z0 1013 aaPredicted RBP32.77■■■□□ 2.84
SOX1-201ENST00000330949 PTPRKQ15262 1439 aa32.77■■■□□ 2.84
SOX1-201ENST00000330949 GAPVD1Q14C86 1478 aa32.77■■■□□ 2.84
SOX1-201ENST00000330949 CTTNBP2Q8WZ74 1663 aa32.76■■■□□ 2.83
SOX1-201ENST00000330949 NEFMP07197 916 aa32.76■■■□□ 2.83
SOX1-201ENST00000330949 FGD6Q6ZV73 1430 aa32.75■■■□□ 2.83
SOX1-201ENST00000330949 SNAPC4Q5SXM2 1469 aa32.75■■■□□ 2.83
SOX1-201ENST00000330949 RRP7BPQ9NSQ0 103 aa32.74■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms