RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 EIF4G1Q04637 1599 aaKnown RBP28.49■■■□□ 2.15
CMTM4-201ENST00000330687 RAB3GAP2Q9H2M9 1393 aa28.49■■■□□ 2.15
CMTM4-201ENST00000330687 IL27Q8NEV9 243 aa28.48■■■□□ 2.15
CMTM4-201ENST00000330687 CCER2I3L3R5 266 aa28.47■■■□□ 2.15
CMTM4-201ENST00000330687 FAM9BQ8IZU0 186 aa28.46■■■□□ 2.15
CMTM4-201ENST00000330687 PPP4R2Q9NY27 417 aa28.42■■■□□ 2.14
CMTM4-201ENST00000330687 CCNB3Q8WWL7 1395 aa28.42■■■□□ 2.14
CMTM4-201ENST00000330687 NPM2Q86SE8 214 aaKnown RBP28.41■■■□□ 2.14
CMTM4-201ENST00000330687 BAZ1BQ9UIG0 1483 aaKnown RBP28.38■■■□□ 2.13
CMTM4-201ENST00000330687 KIF21BO75037 1637 aa28.36■■■□□ 2.13
CMTM4-201ENST00000330687 WDR97A6NE52 1622 aa28.34■■■□□ 2.13
CMTM4-201ENST00000330687 EIF5BO60841 1220 aaKnown RBP28.34■■■□□ 2.13
CMTM4-201ENST00000330687 ANP32AP39687 249 aaKnown RBP28.33■■■□□ 2.13
CMTM4-201ENST00000330687 PABPN1Q86U42 306 aaKnown RBP eCLIP28.31■■■□□ 2.12
CMTM4-201ENST00000330687 ZBTB47Q9UFB7 747 aaPredicted RBP28.31■■■□□ 2.12
CMTM4-201ENST00000330687 SMARCA2P51531 1590 aa28.28■■■□□ 2.12
CMTM4-201ENST00000330687 TOP2AP11388 1531 aaKnown RBP28.27■■■□□ 2.12
CMTM4-201ENST00000330687 LAS1LQ9Y4W2 734 aaKnown RBP28.26■■■□□ 2.11
CMTM4-201ENST00000330687 NACADO15069 1562 aa28.25■■■□□ 2.11
CMTM4-201ENST00000330687 TONSLQ96HA7 1378 aa28.21■■■□□ 2.11
CMTM4-201ENST00000330687 CCDC184Q52MB2 194 aa28.2■■■□□ 2.1
CMTM4-201ENST00000330687 P3H3Q8IVL6 736 aa28.19■■■□□ 2.1
CMTM4-201ENST00000330687 MRS2Q9HD23 443 aa28.15■■■□□ 2.1
CMTM4-201ENST00000330687 POLR3GLQ9BT43 218 aa28.14■■■□□ 2.1
CMTM4-201ENST00000330687 SETD5Q9C0A6 1442 aa28.12■■■□□ 2.09
CMTM4-201ENST00000330687 MAPKBP1O60336 1514 aa28.1■■■□□ 2.09
CMTM4-201ENST00000330687 RRBP1Q9P2E9 1410 aaKnown RBP28.09■■■□□ 2.09
CMTM4-201ENST00000330687 IPO9Q96P70 1041 aaKnown RBP28.08■■■□□ 2.09
CMTM4-201ENST00000330687 NEFMP07197 916 aa28.08■■■□□ 2.09
CMTM4-201ENST00000330687 SYNJ1O43426 1573 aa28.06■■■□□ 2.08
CMTM4-201ENST00000330687 ARAP1Q96P48 1450 aa28.04■■■□□ 2.08
CMTM4-201ENST00000330687 ERICH6BQ5W0A0 696 aa28.04■■■□□ 2.08
CMTM4-201ENST00000330687 HSPA5P11021 654 aaKnown RBP27.92■■■□□ 2.06
CMTM4-201ENST00000330687 BRPF3Q9ULD4 1205 aa27.9■■■□□ 2.06
CMTM4-201ENST00000330687 SMARCA4P51532 1647 aa27.89■■■□□ 2.05
CMTM4-201ENST00000330687 WASHC2AQ641Q2 1341 aa27.85■■■□□ 2.05
CMTM4-201ENST00000330687 TIMELESSQ9UNS1 1208 aa27.83■■■□□ 2.05
CMTM4-201ENST00000330687 PHLDB1Q86UU1 1377 aa27.82■■■□□ 2.04
CMTM4-201ENST00000330687 AKNAQ7Z591 1439 aa27.81■■■□□ 2.04
CMTM4-201ENST00000330687 CUX2O14529 1486 aa27.8■■■□□ 2.04
CMTM4-201ENST00000330687 EIF4G2P78344 907 aaKnown RBP eCLIP27.76■■■□□ 2.04
CMTM4-201ENST00000330687 PRKRIP1Q9H875 184 aaPredicted RBP27.74■■■□□ 2.03
CMTM4-201ENST00000330687 CHIC2Q9UKJ5 165 aa27.72■■■□□ 2.03
CMTM4-201ENST00000330687 ZBED9Q6R2W3 1325 aa27.71■■■□□ 2.03
CMTM4-201ENST00000330687 SLC4A3P48751 1232 aa27.71■■■□□ 2.03
CMTM4-201ENST00000330687 DAXXQ9UER7 740 aaPredicted RBP27.68■■■□□ 2.02
CMTM4-201ENST00000330687 C11orf95C9JLR9 678 aaPredicted RBP27.66■■■□□ 2.02
CMTM4-201ENST00000330687 UBE2Q2Q8WVN8 375 aa27.66■■■□□ 2.02
CMTM4-201ENST00000330687 RRP7BPQ9NSQ0 103 aa27.65■■■□□ 2.02
CMTM4-201ENST00000330687 ARHGAP35Q9NRY4 1499 aa27.65■■■□□ 2.02
CMTM4-201ENST00000330687 FOXD1Q16676 465 aa27.64■■■□□ 2.02
CMTM4-201ENST00000330687 SKAP1Q86WV1 359 aa27.63■■■□□ 2.01
CMTM4-201ENST00000330687 ZNF326Q5BKZ1 582 aaKnown RBP27.63■■■□□ 2.01
CMTM4-201ENST00000330687 PDE4AP27815 886 aa27.57■■■□□ 2
CMTM4-201ENST00000330687 NUDCQ9Y266 331 aa27.57■■■□□ 2
CMTM4-201ENST00000330687 PRXQ9BXM0 1461 aa27.57■■■□□ 2
CMTM4-201ENST00000330687 ARXQ96QS3 562 aa27.56■■■□□ 2
CMTM4-201ENST00000330687 EXOC6Q8TAG9 804 aa27.54■■■□□ 2
CMTM4-201ENST00000330687 PPM1GO15355 546 aaPredicted RBP27.54■■■□□ 2
CMTM4-201ENST00000330687 GSE1Q14687 1217 aa27.51■■■□□ 2
CMTM4-201ENST00000330687 KIF27Q86VH2 1401 aa27.5■■□□□ 1.99
CMTM4-201ENST00000330687 FRAT1Q92837 279 aaPredicted RBP27.48■■□□□ 1.99
CMTM4-201ENST00000330687 TMC1Q8TDI8 760 aa27.48■■□□□ 1.99
CMTM4-201ENST00000330687 LRRC9Q6ZRR7 1453 aa27.46■■□□□ 1.99
CMTM4-201ENST00000330687 L3MBTL2Q969R5 705 aa27.46■■□□□ 1.99
CMTM4-201ENST00000330687 CNTLNQ9NXG0 1405 aa27.45■■□□□ 1.98
CMTM4-201ENST00000330687 USP35Q9P2H5 1018 aa27.44■■□□□ 1.98
CMTM4-201ENST00000330687 NFKBIBQ15653 356 aa27.42■■□□□ 1.98
CMTM4-201ENST00000330687 CCDC18Q5T9S5 1454 aa27.41■■□□□ 1.98
CMTM4-201ENST00000330687 FHAD1B1AJZ9 1412 aa27.4■■□□□ 1.98
CMTM4-201ENST00000330687 ERICH3Q5RHP9 1530 aa27.39■■□□□ 1.97
CMTM4-201ENST00000330687 ARID3CA6NKF2 412 aa27.38■■□□□ 1.97
CMTM4-201ENST00000330687 CCDC7Q96M83 1385 aa27.37■■□□□ 1.97
CMTM4-201ENST00000330687 TCERG1O14776 1098 aaKnown RBP27.37■■□□□ 1.97
CMTM4-201ENST00000330687 PLIN1O60240 522 aa27.37■■□□□ 1.97
CMTM4-201ENST00000330687 TIAM1Q13009 1591 aa27.35■■□□□ 1.97
CMTM4-201ENST00000330687 BACH2Q9BYV9 841 aa27.34■■□□□ 1.97
CMTM4-201ENST00000330687 KIF7Q2M1P5 1343 aa27.33■■□□□ 1.97
CMTM4-201ENST00000330687 WASHC2CQ9Y4E1 1318 aa27.31■■□□□ 1.96
CMTM4-201ENST00000330687 MTUS2Q5JR59 1369 aa27.31■■□□□ 1.96
CMTM4-201ENST00000330687 SMG6Q86US8 1419 aaKnown RBP27.29■■□□□ 1.96
CMTM4-201ENST00000330687 RRP1P56182 461 aaKnown RBP27.27■■□□□ 1.96
CMTM4-201ENST00000330687 FHOD3Q2V2M9 1422 aa27.27■■□□□ 1.96
CMTM4-201ENST00000330687 AQRO60306 1485 aaKnown RBP eCLIP27.27■■□□□ 1.96
CMTM4-201ENST00000330687 FRAT2O75474 233 aaPredicted RBP27.26■■□□□ 1.95
CMTM4-201ENST00000330687 NBPF8Q3BBV2 869 aa27.26■■□□□ 1.95
CMTM4-201ENST00000330687 PKNOX2Q96KN3 472 aa27.26■■□□□ 1.95
CMTM4-201ENST00000330687 UACAQ9BZF9 1416 aa27.26■■□□□ 1.95
CMTM4-201ENST00000330687 DDRGK1Q96HY6 314 aa27.25■■□□□ 1.95
CMTM4-201ENST00000330687 RCAN3Q9UKA8 241 aa27.25■■□□□ 1.95
CMTM4-201ENST00000330687 TOP2BQ02880 1626 aa27.24■■□□□ 1.95
CMTM4-201ENST00000330687 CARMIL1Q5VZK9 1371 aa27.19■■□□□ 1.94
CMTM4-201ENST00000330687 PTPRKQ15262 1439 aa27.19■■□□□ 1.94
CMTM4-201ENST00000330687 RGS3P49796 1198 aa27.19■■□□□ 1.94
CMTM4-201ENST00000330687 VSIG10Q8N0Z9 540 aa27.18■■□□□ 1.94
CMTM4-201ENST00000330687 MPHOSPH9Q99550 1183 aa27.18■■□□□ 1.94
CMTM4-201ENST00000330687 RSPH6AQ9H0K4 717 aa27.15■■□□□ 1.94
CMTM4-201ENST00000330687 DCAF11Q8TEB1 546 aa27.13■■□□□ 1.93
CMTM4-201ENST00000330687 CDCA7LQ96GN5 454 aa27.13■■□□□ 1.93
CMTM4-201ENST00000330687 ATAD2BQ9ULI0 1458 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms