RNA–Protein interactions for RNA: ENST00000324938.9

LIMS2-201, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS2, Length 2,111 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-201ENST00000324938 CFAP43Q8NDM7 1665 aa32.08■■■□□ 2.73
LIMS2-201ENST00000324938 PCF11O94913 1555 aaKnown RBP32.05■■■□□ 2.72
LIMS2-201ENST00000324938 GAPVD1Q14C86 1478 aa32■■■□□ 2.71
LIMS2-201ENST00000324938 TARBP1Q13395 1621 aaKnown RBP31.99■■■□□ 2.71
LIMS2-201ENST00000324938 CCNB3Q8WWL7 1395 aa31.99■■■□□ 2.71
LIMS2-201ENST00000324938 LRRC9Q6ZRR7 1453 aa31.98■■■□□ 2.71
LIMS2-201ENST00000324938 TDRD9Q8NDG6 1382 aaKnown RBP31.94■■■□□ 2.7
LIMS2-201ENST00000324938 FYCO1Q9BQS8 1478 aa31.93■■■□□ 2.7
LIMS2-201ENST00000324938 FHOD3Q2V2M9 1422 aa31.93■■■□□ 2.7
LIMS2-201ENST00000324938 AQRO60306 1485 aaKnown RBP eCLIP31.92■■■□□ 2.7
LIMS2-201ENST00000324938 CLSPNQ9HAW4 1339 aa31.88■■■□□ 2.69
LIMS2-201ENST00000324938 SAMD9Q5K651 1589 aa31.87■■■□□ 2.69
LIMS2-201ENST00000324938 CASKIN1Q8WXD9 1431 aa31.87■■■□□ 2.69
LIMS2-201ENST00000324938 DHX57Q6P158 1386 aaKnown RBP31.86■■■□□ 2.69
LIMS2-201ENST00000324938 PBRM1Q86U86 1689 aa31.85■■■□□ 2.69
LIMS2-201ENST00000324938 P3H3Q8IVL6 736 aa31.84■■■□□ 2.69
LIMS2-201ENST00000324938 DIEXFQ68CQ4 756 aaKnown RBP31.82■■■□□ 2.68
LIMS2-201ENST00000324938 MRC2Q9UBG0 1479 aa31.81■■■□□ 2.68
LIMS2-201ENST00000324938 FMN1Q68DA7 1419 aa31.8■■■□□ 2.68
LIMS2-201ENST00000324938 ZNF316A6NFI3 1004 aaPredicted RBP31.79■■■□□ 2.68
LIMS2-201ENST00000324938 PHLDB1Q86UU1 1377 aa31.76■■■□□ 2.67
LIMS2-201ENST00000324938 SNAPC4Q5SXM2 1469 aa31.76■■■□□ 2.67
LIMS2-201ENST00000324938 ADAMTS12P58397 1594 aa31.68■■■□□ 2.66
LIMS2-201ENST00000324938 LRRIQ1Q96JM4 1722 aa31.67■■■□□ 2.66
LIMS2-201ENST00000324938 THOC2Q8NI27 1593 aaKnown RBP31.65■■■□□ 2.66
LIMS2-201ENST00000324938 ATP1B4Q9UN42 357 aaPredicted RBP31.63■■■□□ 2.65
LIMS2-201ENST00000324938 WDR62O43379 1518 aa31.62■■■□□ 2.65
LIMS2-201ENST00000324938 ITGAEP38570 1179 aa31.6■■■□□ 2.65
LIMS2-201ENST00000324938 GRIN2BQ13224 1484 aa31.59■■■□□ 2.65
LIMS2-201ENST00000324938 RAB3GAP2Q9H2M9 1393 aa31.57■■■□□ 2.64
LIMS2-201ENST00000324938 IFT140Q96RY7 1462 aa31.56■■■□□ 2.64
LIMS2-201ENST00000324938 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.56■■■□□ 2.64
LIMS2-201ENST00000324938 IQGAP2Q13576 1575 aa31.55■■■□□ 2.64
LIMS2-201ENST00000324938 SETD5Q9C0A6 1442 aa31.53■■■□□ 2.64
LIMS2-201ENST00000324938 FAM50AQ14320 339 aaKnown RBP31.48■■■□□ 2.63
LIMS2-201ENST00000324938 MAPKBP1O60336 1514 aa31.46■■■□□ 2.63
LIMS2-201ENST00000324938 MTUS2Q5JR59 1369 aa31.45■■■□□ 2.63
LIMS2-201ENST00000324938 FGD6Q6ZV73 1430 aa31.45■■■□□ 2.62
LIMS2-201ENST00000324938 EHBP1L1Q8N3D4 1523 aa31.45■■■□□ 2.62
LIMS2-201ENST00000324938 SUPT6HQ7KZ85 1726 aaKnown RBP31.44■■■□□ 2.62
LIMS2-201ENST00000324938 ZNF608Q9ULD9 1512 aaPredicted RBP31.44■■■□□ 2.62
LIMS2-201ENST00000324938 HECW1Q76N89 1606 aa31.41■■■□□ 2.62
LIMS2-201ENST00000324938 CCDC18Q5T9S5 1454 aa31.41■■■□□ 2.62
LIMS2-201ENST00000324938 UGGT2Q9NYU1 1516 aa31.38■■■□□ 2.61
LIMS2-201ENST00000324938 EIF4G3O43432 1585 aaKnown RBP31.38■■■□□ 2.61
LIMS2-201ENST00000324938 NCOA2Q15596 1464 aa31.37■■■□□ 2.61
LIMS2-201ENST00000324938 ARHGEF11O15085 1522 aa31.32■■■□□ 2.6
LIMS2-201ENST00000324938 MYOM3Q5VTT5 1437 aa31.32■■■□□ 2.6
LIMS2-201ENST00000324938 MAGI3Q5TCQ9 1506 aa31.31■■■□□ 2.6
LIMS2-201ENST00000324938 ERCC6Q03468 1493 aa31.29■■■□□ 2.6
LIMS2-201ENST00000324938 KIAA0586Q9BVV6 1533 aa31.26■■■□□ 2.59
LIMS2-201ENST00000324938 EPRSP07814 1512 aaKnown RBP31.25■■■□□ 2.59
LIMS2-201ENST00000324938 SCAF1Q9H7N4 1312 aaKnown RBP31.24■■■□□ 2.59
LIMS2-201ENST00000324938 GRIN2AQ12879 1464 aa31.24■■■□□ 2.59
LIMS2-201ENST00000324938 ACIN1Q9UKV3 1341 aaKnown RBP31.24■■■□□ 2.59
LIMS2-201ENST00000324938 KIAA0556O60303 1618 aa31.23■■■□□ 2.59
LIMS2-201ENST00000324938 PTPN23Q9H3S7 1636 aa31.23■■■□□ 2.59
LIMS2-201ENST00000324938 CENPBP07199 599 aaPredicted RBP31.19■■■□□ 2.58
LIMS2-201ENST00000324938 MAGI1Q96QZ7 1491 aaPredicted RBP31.18■■■□□ 2.58
LIMS2-201ENST00000324938 HFM1A2PYH4 1435 aa31.17■■■□□ 2.58
LIMS2-201ENST00000324938 PTPRKQ15262 1439 aa31.17■■■□□ 2.58
LIMS2-201ENST00000324938 DISP1Q96F81 1524 aa31.17■■■□□ 2.58
LIMS2-201ENST00000324938 MIER1Q8N108 512 aa31.16■■■□□ 2.58
LIMS2-201ENST00000324938 NEUROD1Q13562 356 aa31.15■■■□□ 2.58
LIMS2-201ENST00000324938 CDK13Q14004 1512 aaKnown RBP31.15■■■□□ 2.58
LIMS2-201ENST00000324938 TCOF1Q13428 1488 aaKnown RBP31.14■■■□□ 2.58
LIMS2-201ENST00000324938 SYNJ2O15056 1496 aa31.07■■■□□ 2.56
LIMS2-201ENST00000324938 RAPGEF6Q8TEU7 1601 aa31.07■■■□□ 2.56
LIMS2-201ENST00000324938 CEP170Q5SW79 1584 aa31.06■■■□□ 2.56
LIMS2-201ENST00000324938 NAIPQ13075 1403 aa31.06■■■□□ 2.56
LIMS2-201ENST00000324938 GCC2Q8IWJ2 1684 aa31.04■■■□□ 2.56
LIMS2-201ENST00000324938 UACAQ9BZF9 1416 aa31.03■■■□□ 2.56
LIMS2-201ENST00000324938 TIMELESSQ9UNS1 1208 aa31.03■■■□□ 2.56
LIMS2-201ENST00000324938 MIA2Q96PC5 1412 aa31.02■■■□□ 2.56
LIMS2-201ENST00000324938 SIN3AQ96ST3 1273 aa31■■■□□ 2.55
LIMS2-201ENST00000324938 NUP153P49790 1475 aaKnown RBP30.99■■■□□ 2.55
LIMS2-201ENST00000324938 AKNAQ7Z591 1439 aa30.96■■■□□ 2.55
LIMS2-201ENST00000324938 NUP160Q12769 1436 aa30.92■■■□□ 2.54
LIMS2-201ENST00000324938 CHMP7Q8WUX9 453 aaPredicted RBP30.91■■■□□ 2.54
LIMS2-201ENST00000324938 ARID3CA6NKF2 412 aa30.85■■■□□ 2.53
LIMS2-201ENST00000324938 YTHDC1Q96MU7 727 aaKnown RBP30.85■■■□□ 2.53
LIMS2-201ENST00000324938 DNMT1P26358 1616 aaKnown RBP30.81■■■□□ 2.52
LIMS2-201ENST00000324938 CARMIL2Q6F5E8 1435 aa30.8■■■□□ 2.52
LIMS2-201ENST00000324938 ADCY10Q96PN6 1610 aa30.79■■■□□ 2.52
LIMS2-201ENST00000324938 PPP1R15AO75807 674 aaPredicted RBP30.79■■■□□ 2.52
LIMS2-201ENST00000324938 KDM6BO15054 1643 aa30.78■■■□□ 2.52
LIMS2-201ENST00000324938 CDK11AQ9UQ88 783 aaPredicted RBP30.77■■■□□ 2.52
LIMS2-201ENST00000324938 ITSN2Q9NZM3 1697 aa30.77■■■□□ 2.52
LIMS2-201ENST00000324938 PLB1Q6P1J6 1458 aa30.77■■■□□ 2.52
LIMS2-201ENST00000324938 TROQ12816 1431 aaPredicted RBP30.76■■■□□ 2.51
LIMS2-201ENST00000324938 RRP7BPQ9NSQ0 103 aa30.76■■■□□ 2.51
LIMS2-201ENST00000324938 GTF3C3Q9Y5Q9 886 aa30.76■■■□□ 2.51
LIMS2-201ENST00000324938 TONSLQ96HA7 1378 aa30.75■■■□□ 2.51
LIMS2-201ENST00000324938 FBLN2P98095 1184 aa30.74■■■□□ 2.51
LIMS2-201ENST00000324938 DAPK1P53355 1430 aa30.74■■■□□ 2.51
LIMS2-201ENST00000324938 CHIC2Q9UKJ5 165 aa30.74■■■□□ 2.51
LIMS2-201ENST00000324938 ROCK1Q13464 1354 aa30.71■■■□□ 2.51
LIMS2-201ENST00000324938 JPH4Q96JJ6 628 aa30.71■■■□□ 2.51
LIMS2-201ENST00000324938 DENND4BO75064 1496 aaPredicted RBP30.69■■■□□ 2.5
LIMS2-201ENST00000324938 PRG4Q92954 1404 aaPredicted RBP30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms