RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 ARAP1Q96P48 1450 aa13.09□□□□□ -0.31
CNOT4-201ENST00000315544 FHAD1B1AJZ9 1412 aa13.09□□□□□ -0.31
CNOT4-201ENST00000315544 DNAJC5Q9H3Z4 198 aa13.06□□□□□ -0.32
CNOT4-201ENST00000315544 CEP162Q5TB80 1403 aa13.05□□□□□ -0.32
CNOT4-201ENST00000315544 ADCY10Q96PN6 1610 aa13.05□□□□□ -0.32
CNOT4-201ENST00000315544 MAPKBP1O60336 1514 aa13.05□□□□□ -0.32
CNOT4-201ENST00000315544 KDM5BQ9UGL1 1544 aa13.03□□□□□ -0.32
CNOT4-201ENST00000315544 ERCC6L2Q5T890 1561 aa13.03□□□□□ -0.32
CNOT4-201ENST00000315544 MAP3K1Q13233 1512 aa13.03□□□□□ -0.32
CNOT4-201ENST00000315544 AQRO60306 1485 aaKnown RBP eCLIP13.03□□□□□ -0.322e-7■■■■□ 23.2
CNOT4-201ENST00000315544 GLI2P10070 1586 aa13.03□□□□□ -0.32
CNOT4-201ENST00000315544 KIAA0556O60303 1618 aa13.02□□□□□ -0.32
CNOT4-201ENST00000315544 UHRF1BP1LA0JNW5 1464 aa13.02□□□□□ -0.32
CNOT4-201ENST00000315544 TRIM26Q12899 539 aaPredicted RBP13.01□□□□□ -0.33
CNOT4-201ENST00000315544 MAP3K4Q9Y6R4 1608 aa13□□□□□ -0.33
CNOT4-201ENST00000315544 RAPGEF2Q9Y4G8 1499 aa13□□□□□ -0.33
CNOT4-201ENST00000315544 GOLGA3Q08378 1498 aa12.99□□□□□ -0.33
CNOT4-201ENST00000315544 ABCA8O94911 1581 aa12.98□□□□□ -0.33
CNOT4-201ENST00000315544 IQGAP2Q13576 1575 aa12.98□□□□□ -0.33
CNOT4-201ENST00000315544 DISP1Q96F81 1524 aa12.98□□□□□ -0.33
CNOT4-201ENST00000315544 PPARGC1BQ86YN6 1023 aaKnown RBP12.97□□□□□ -0.33
CNOT4-201ENST00000315544 KIAA0586Q9BVV6 1533 aa12.95□□□□□ -0.34
CNOT4-201ENST00000315544 IGF1RP08069 1367 aa12.93□□□□□ -0.34
CNOT4-201ENST00000315544 CLIP1P30622 1438 aa12.91□□□□□ -0.34
CNOT4-201ENST00000315544 DIP2BQ9P265 1576 aa12.89□□□□□ -0.35
CNOT4-201ENST00000315544 PCGF6Q9BYE7 350 aa12.88□□□□□ -0.35
CNOT4-201ENST00000315544 RRBP1Q9P2E9 1410 aaKnown RBP12.88□□□□□ -0.35
CNOT4-201ENST00000315544 ZCCHC11Q5TAX3 1644 aaKnown RBP12.87□□□□□ -0.35
CNOT4-201ENST00000315544 VPS8Q8N3P4 1428 aa12.86□□□□□ -0.35
CNOT4-201ENST00000315544 EFCAB5A4FU69 1503 aa12.85□□□□□ -0.35
CNOT4-201ENST00000315544 ARHGAP35Q9NRY4 1499 aa12.85□□□□□ -0.35
CNOT4-201ENST00000315544 KIF27Q86VH2 1401 aa12.83□□□□□ -0.36
CNOT4-201ENST00000315544 TIAM1Q13009 1591 aa12.8□□□□□ -0.36
CNOT4-201ENST00000315544 ABCC2Q92887 1545 aa12.79□□□□□ -0.36
CNOT4-201ENST00000315544 ABCA9Q8IUA7 1624 aa12.79□□□□□ -0.36
CNOT4-201ENST00000315544 TRIM41Q8WV44 630 aa12.79□□□□□ -0.36
CNOT4-201ENST00000315544 TDRD9Q8NDG6 1382 aaKnown RBP12.76□□□□□ -0.37
CNOT4-201ENST00000315544 BCORL1Q5H9F3 1711 aa12.76□□□□□ -0.37
CNOT4-201ENST00000315544 RAPGEF6Q8TEU7 1601 aa12.74□□□□□ -0.37
CNOT4-201ENST00000315544 PCF11O94913 1555 aaKnown RBP12.74□□□□□ -0.37
CNOT4-201ENST00000315544 ARAP3Q8WWN8 1544 aa12.73□□□□□ -0.37
CNOT4-201ENST00000315544 DENND4BO75064 1496 aaPredicted RBP12.73□□□□□ -0.37
CNOT4-201ENST00000315544 POLR1AO95602 1720 aaPredicted RBP12.72□□□□□ -0.37
CNOT4-201ENST00000315544 FRMPD1Q5SYB0 1578 aa12.7□□□□□ -0.38
CNOT4-201ENST00000315544 GCC2Q8IWJ2 1684 aa12.68□□□□□ -0.38
CNOT4-201ENST00000315544 RICTORQ6R327 1708 aa12.68□□□□□ -0.38
CNOT4-201ENST00000315544 MAGI3Q5TCQ9 1506 aa12.65□□□□□ -0.38
CNOT4-201ENST00000315544 CSRNP3Q8WYN3 585 aa12.63□□□□□ -0.39
CNOT4-201ENST00000315544 ABCC10Q5T3U5 1492 aa12.63□□□□□ -0.39
CNOT4-201ENST00000315544 REREQ9P2R6 1566 aa12.62□□□□□ -0.39
CNOT4-201ENST00000315544 CFAP74Q9C0B2 1584 aa12.62□□□□□ -0.39
CNOT4-201ENST00000315544 ZMYM4Q5VZL5 1548 aa12.61□□□□□ -0.39
CNOT4-201ENST00000315544 SIGLEC1Q9BZZ2 1709 aa12.6□□□□□ -0.39
CNOT4-201ENST00000315544 CROCC2H7BZ55 1655 aa12.59□□□□□ -0.39
CNOT4-201ENST00000315544 OSCARQ8IYS5 282 aa12.59□□□□□ -0.39
CNOT4-201ENST00000315544 CARMIL1Q5VZK9 1371 aa12.59□□□□□ -0.39
CNOT4-201ENST00000315544 CDC42BPBQ9Y5S2 1711 aa12.59□□□□□ -0.39
CNOT4-201ENST00000315544 CDC42BPAQ5VT25 1732 aa12.58□□□□□ -0.4
CNOT4-201ENST00000315544 PREX2Q70Z35 1606 aa12.58□□□□□ -0.4
CNOT4-201ENST00000315544 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.57□□□□□ -0.4
CNOT4-201ENST00000315544 ITSN2Q9NZM3 1697 aa12.56□□□□□ -0.4
CNOT4-201ENST00000315544 HECW1Q76N89 1606 aa12.56□□□□□ -0.4
CNOT4-201ENST00000315544 PRG4Q92954 1404 aaPredicted RBP12.54□□□□□ -0.4
CNOT4-201ENST00000315544 DHX57Q6P158 1386 aaKnown RBP12.54□□□□□ -0.4
CNOT4-201ENST00000315544 MYO5CQ9NQX4 1742 aa12.54□□□□□ -0.4
CNOT4-201ENST00000315544 LRRC9Q6ZRR7 1453 aa12.54□□□□□ -0.4
CNOT4-201ENST00000315544 FYCO1Q9BQS8 1478 aa12.53□□□□□ -0.4
CNOT4-201ENST00000315544 NUP153P49790 1475 aaKnown RBP12.52□□□□□ -0.4
CNOT4-201ENST00000315544 EPRSP07814 1512 aaKnown RBP12.52□□□□□ -0.41
CNOT4-201ENST00000315544 KDM5CP41229 1560 aa12.52□□□□□ -0.41
CNOT4-201ENST00000315544 TCOF1Q13428 1488 aaKnown RBP12.51□□□□□ -0.41
CNOT4-201ENST00000315544 KDM6BO15054 1643 aa12.51□□□□□ -0.41
CNOT4-201ENST00000315544 TTC37Q6PGP7 1564 aa12.48□□□□□ -0.41
CNOT4-201ENST00000315544 ZEB1P37275 1124 aaPredicted RBP12.48□□□□□ -0.41
CNOT4-201ENST00000315544 SCAF1Q9H7N4 1312 aaKnown RBP12.46□□□□□ -0.41
CNOT4-201ENST00000315544 ADAMTSL3P82987 1691 aa12.46□□□□□ -0.42
CNOT4-201ENST00000315544 UACAQ9BZF9 1416 aa12.46□□□□□ -0.42
CNOT4-201ENST00000315544 PTPN23Q9H3S7 1636 aa12.45□□□□□ -0.42
CNOT4-201ENST00000315544 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.44□□□□□ -0.42
CNOT4-201ENST00000315544 PLXNC1O60486 1568 aa12.43□□□□□ -0.42
CNOT4-201ENST00000315544 MAST1Q9Y2H9 1570 aa12.43□□□□□ -0.42
CNOT4-201ENST00000315544 PLB1Q6P1J6 1458 aa12.43□□□□□ -0.42
CNOT4-201ENST00000315544 ADGBQ8N7X0 1667 aa12.43□□□□□ -0.42
CNOT4-201ENST00000315544 INO80Q9ULG1 1556 aaPredicted RBP12.43□□□□□ -0.42
CNOT4-201ENST00000315544 CASKIN1Q8WXD9 1431 aa12.43□□□□□ -0.42
CNOT4-201ENST00000315544 MROH2AA6NES4 1674 aa12.43□□□□□ -0.42
CNOT4-201ENST00000315544 WDR7Q9Y4E6 1490 aa12.42□□□□□ -0.42
CNOT4-201ENST00000315544 PTPRKQ15262 1439 aa12.42□□□□□ -0.42
CNOT4-201ENST00000315544 ATP10BO94823 1461 aa12.4□□□□□ -0.42
CNOT4-201ENST00000315544 KIF14Q15058 1648 aa12.4□□□□□ -0.42
CNOT4-201ENST00000315544 CLSPNQ9HAW4 1339 aa12.39□□□□□ -0.43
CNOT4-201ENST00000315544 ARHGEF40Q8TER5 1519 aa12.39□□□□□ -0.43
CNOT4-201ENST00000315544 E9PCH4 1651 aa12.38□□□□□ -0.43
CNOT4-201ENST00000315544 PHLDB1Q86UU1 1377 aa12.37□□□□□ -0.43
CNOT4-201ENST00000315544 FAM135AQ9P2D6 1515 aa12.37□□□□□ -0.43
CNOT4-201ENST00000315544 KANK4Q5T7N3 995 aaPredicted RBP12.36□□□□□ -0.43
CNOT4-201ENST00000315544 DEPDC5O75140 1603 aa12.36□□□□□ -0.43
CNOT4-201ENST00000315544 CARMIL2Q6F5E8 1435 aa12.35□□□□□ -0.43
CNOT4-201ENST00000315544 SUPT6HQ7KZ85 1726 aaKnown RBP12.35□□□□□ -0.43
CNOT4-201ENST00000315544 CCDC18Q5T9S5 1454 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms