RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 NISCHQ9Y2I1 1504 aa19.09■□□□□ 0.65
CNOT4-201ENST00000315544 CCDC180Q9P1Z9 1646 aa17.69■□□□□ 0.42
CNOT4-201ENST00000315544 MYO15BQ96JP2 1530 aa16.58■□□□□ 0.24
CNOT4-201ENST00000315544 DCAF1Q9Y4B6 1507 aa16.41■□□□□ 0.22
CNOT4-201ENST00000315544 UNC13AQ9UPW8 1703 aa16.33■□□□□ 0.2
CNOT4-201ENST00000315544 NACADO15069 1562 aa16.16■□□□□ 0.18
CNOT4-201ENST00000315544 ZCCHC6Q5VYS8 1495 aaKnown RBP16.1■□□□□ 0.17
CNOT4-201ENST00000315544 SHROOM4Q9ULL8 1493 aa15.98■□□□□ 0.15
CNOT4-201ENST00000315544 RB1CC1Q8TDY2 1594 aa15.98■□□□□ 0.15
CNOT4-201ENST00000315544 BICRAQ9NZM4 1560 aa15.89■□□□□ 0.13
CNOT4-201ENST00000315544 ABCC9O60706 1549 aa15.79■□□□□ 0.12
CNOT4-201ENST00000315544 PEG3Q9GZU2 1588 aa15.31■□□□□ 0.04
CNOT4-201ENST00000315544 SCRIBQ14160 1630 aa15.13■□□□□ 0.01
CNOT4-201ENST00000315544 EIF4G1Q04637 1599 aaKnown RBP15.1■□□□□ 0.01
CNOT4-201ENST00000315544 CC2D2AQ9P2K1 1620 aa14.99□□□□□ -0.01
CNOT4-201ENST00000315544 SMARCA2P51531 1590 aa14.97□□□□□ -0.01
CNOT4-201ENST00000315544 HMGXB3Q12766 1538 aa14.97□□□□□ -0.01
CNOT4-201ENST00000315544 SMARCA4P51532 1647 aa14.96□□□□□ -0.01
CNOT4-201ENST00000315544 PRDM2Q13029 1718 aa14.95□□□□□ -0.02
CNOT4-201ENST00000315544 BAZ1AQ9NRL2 1556 aaPredicted RBP14.76□□□□□ -0.05
CNOT4-201ENST00000315544 NCAPD3P42695 1498 aa14.74□□□□□ -0.05
CNOT4-201ENST00000315544 ATAD2BQ9ULI0 1458 aa14.58□□□□□ -0.07
CNOT4-201ENST00000315544 THOC2Q8NI27 1593 aaKnown RBP14.55□□□□□ -0.08
CNOT4-201ENST00000315544 MROH2BQ7Z745 1585 aa14.55□□□□□ -0.08
CNOT4-201ENST00000315544 DNAJC5BQ9UF47 199 aa14.52□□□□□ -0.08
CNOT4-201ENST00000315544 CECR2Q9BXF3 1484 aa14.51□□□□□ -0.09
CNOT4-201ENST00000315544 TOP2AP11388 1531 aaKnown RBP14.49□□□□□ -0.09
CNOT4-201ENST00000315544 LAMC3Q9Y6N6 1575 aa14.49□□□□□ -0.09
CNOT4-201ENST00000315544 WIZO95785 1651 aa14.48□□□□□ -0.09
CNOT4-201ENST00000315544 KIF21AQ7Z4S6 1674 aa14.39□□□□□ -0.11
CNOT4-201ENST00000315544 WDR97A6NE52 1622 aa14.32□□□□□ -0.12
CNOT4-201ENST00000315544 WDR62O43379 1518 aa14.29□□□□□ -0.12
CNOT4-201ENST00000315544 RSF1Q96T23 1441 aaPredicted RBP14.29□□□□□ -0.12
CNOT4-201ENST00000315544 PABPN1Q86U42 306 aaKnown RBP eCLIP14.22□□□□□ -0.13
CNOT4-201ENST00000315544 CUX2O14529 1486 aa14.2□□□□□ -0.14
CNOT4-201ENST00000315544 BAZ1BQ9UIG0 1483 aaKnown RBP14.19□□□□□ -0.14
CNOT4-201ENST00000315544 CFTRP13569 1480 aa14.18□□□□□ -0.14
CNOT4-201ENST00000315544 BIVM-ERCC5R4GMW8 1640 aa14.11□□□□□ -0.15
CNOT4-201ENST00000315544 CHIC1Q5VXU3 224 aa14.07□□□□□ -0.16
CNOT4-201ENST00000315544 TARBP1Q13395 1621 aaKnown RBP14.06□□□□□ -0.16
CNOT4-201ENST00000315544 CCDC88BA6NC98 1476 aa13.96□□□□□ -0.18
CNOT4-201ENST00000315544 DNMBPQ6XZF7 1577 aa13.94□□□□□ -0.18
CNOT4-201ENST00000315544 NESP48681 1621 aa13.92□□□□□ -0.18
CNOT4-201ENST00000315544 ABCA5Q8WWZ7 1642 aa13.9□□□□□ -0.18
CNOT4-201ENST00000315544 MRC2Q9UBG0 1479 aa13.9□□□□□ -0.18
CNOT4-201ENST00000315544 URB2Q14146 1524 aaKnown RBP13.89□□□□□ -0.19
CNOT4-201ENST00000315544 CADPSQ9ULU8 1353 aa13.89□□□□□ -0.19
CNOT4-201ENST00000315544 PBRM1Q86U86 1689 aa13.85□□□□□ -0.19
CNOT4-201ENST00000315544 TOP2BQ02880 1626 aa13.83□□□□□ -0.2
CNOT4-201ENST00000315544 ABCC8Q09428 1581 aa13.79□□□□□ -0.2
CNOT4-201ENST00000315544 FANCD2Q9BXW9 1451 aa13.76□□□□□ -0.21
CNOT4-201ENST00000315544 EIF4G3O43432 1585 aaKnown RBP13.75□□□□□ -0.21
CNOT4-201ENST00000315544 PDS5BQ9NTI5 1447 aa13.75□□□□□ -0.21
CNOT4-201ENST00000315544 SHROOM2Q13796 1616 aa13.74□□□□□ -0.21
CNOT4-201ENST00000315544 CEP164Q9UPV0 1460 aa13.73□□□□□ -0.21
CNOT4-201ENST00000315544 CUX1P39880 1505 aa13.73□□□□□ -0.21
CNOT4-201ENST00000315544 TOPBP1Q92547 1522 aa13.73□□□□□ -0.21
CNOT4-201ENST00000315544 CLASP1Q7Z460 1538 aa13.68□□□□□ -0.22
CNOT4-201ENST00000315544 DCAF8L2P0C7V8 631 aa13.68□□□□□ -0.22
CNOT4-201ENST00000315544 CHD1O14646 1710 aa13.67□□□□□ -0.22
CNOT4-201ENST00000315544 SYNJ1O43426 1573 aa13.65□□□□□ -0.22
CNOT4-201ENST00000315544 IFT140Q96RY7 1462 aa13.62□□□□□ -0.23
CNOT4-201ENST00000315544 ABCA10Q8WWZ4 1543 aa13.61□□□□□ -0.23
CNOT4-201ENST00000315544 KIF21BO75037 1637 aa13.59□□□□□ -0.23
CNOT4-201ENST00000315544 WRNQ14191 1432 aaPredicted RBP eCLIP13.58□□□□□ -0.23
CNOT4-201ENST00000315544 ADAMTS12P58397 1594 aa13.58□□□□□ -0.24
CNOT4-201ENST00000315544 POLA1P09884 1462 aaPredicted RBP13.56□□□□□ -0.24
CNOT4-201ENST00000315544 SUPT5HO00267 1087 aaKnown RBP13.54□□□□□ -0.24
CNOT4-201ENST00000315544 ERICH3Q5RHP9 1530 aa13.52□□□□□ -0.25
CNOT4-201ENST00000315544 CUL7Q14999 1698 aa13.52□□□□□ -0.25
CNOT4-201ENST00000315544 HRCP23327 699 aa13.49□□□□□ -0.25
CNOT4-201ENST00000315544 RUSC2Q8N2Y8 1516 aa13.44□□□□□ -0.26
CNOT4-201ENST00000315544 ERCC6Q03468 1493 aa13.43□□□□□ -0.26
CNOT4-201ENST00000315544 MAGI1Q96QZ7 1491 aaPredicted RBP13.43□□□□□ -0.26
CNOT4-201ENST00000315544 FGD5Q6ZNL6 1462 aa13.42□□□□□ -0.26
CNOT4-201ENST00000315544 CTTNBP2Q8WZ74 1663 aa13.38□□□□□ -0.27
CNOT4-201ENST00000315544 ZNF608Q9ULD9 1512 aaPredicted RBP13.37□□□□□ -0.27
CNOT4-201ENST00000315544 CEP170Q5SW79 1584 aa13.36□□□□□ -0.27
CNOT4-201ENST00000315544 RIMBP3CA6NJZ7 1639 aa13.35□□□□□ -0.27
CNOT4-201ENST00000315544 RIMBP3BA6NNM3 1639 aa13.35□□□□□ -0.27
CNOT4-201ENST00000315544 RIMBP3Q9UFD9 1639 aa13.35□□□□□ -0.27
CNOT4-201ENST00000315544 NUP160Q12769 1436 aa13.33□□□□□ -0.28
CNOT4-201ENST00000315544 LRRIQ1Q96JM4 1722 aa13.3□□□□□ -0.28
CNOT4-201ENST00000315544 LOC105371045A0A1W2PR82 267 aa13.27□□□□□ -0.29
CNOT4-201ENST00000315544 SYNJ2O15056 1496 aa13.26□□□□□ -0.29
CNOT4-201ENST00000315544 GRIN2BQ13224 1484 aa13.24□□□□□ -0.29
CNOT4-201ENST00000315544 SOGA1O94964 1423 aa13.24□□□□□ -0.29
CNOT4-201ENST00000315544 SAMD9Q5K651 1589 aa13.22□□□□□ -0.29
CNOT4-201ENST00000315544 PRXQ9BXM0 1461 aa13.21□□□□□ -0.29
CNOT4-201ENST00000315544 EEA1Q15075 1411 aa13.2□□□□□ -0.3
CNOT4-201ENST00000315544 KIF13AQ9H1H9 1805 aa13.19□□□□□ -0.3
CNOT4-201ENST00000315544 RAD54L2Q9Y4B4 1467 aa13.19□□□□□ -0.3
CNOT4-201ENST00000315544 GRIN2AQ12879 1464 aa13.16□□□□□ -0.3
CNOT4-201ENST00000315544 SNAPC4Q5SXM2 1469 aa13.16□□□□□ -0.3
CNOT4-201ENST00000315544 TNIKQ9UKE5 1360 aa13.15□□□□□ -0.3
CNOT4-201ENST00000315544 GAPVD1Q14C86 1478 aa13.14□□□□□ -0.31
CNOT4-201ENST00000315544 UGGT2Q9NYU1 1516 aa13.14□□□□□ -0.31
CNOT4-201ENST00000315544 PPRC1Q5VV67 1664 aaKnown RBP13.13□□□□□ -0.31
CNOT4-201ENST00000315544 CFAP43Q8NDM7 1665 aa13.12□□□□□ -0.31
CNOT4-201ENST00000315544 ARHGEF11O15085 1522 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms