RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 EHMT2Q96KQ7 1210 aa40.15■■■■■ 4.02
HOXC9-201ENST00000303450 GOLGA3Q08378 1498 aa40.1■■■■■ 4.01
HOXC9-201ENST00000303450 CTTNBP2Q8WZ74 1663 aa40.09■■■■■ 4.01
HOXC9-201ENST00000303450 JPH4Q96JJ6 628 aa40.09■■■■■ 4.01
HOXC9-201ENST00000303450 IQGAP2Q13576 1575 aa40.07■■■■■ 4.01
HOXC9-201ENST00000303450 SHROOM2Q13796 1616 aa40.05■■■■■ 4
HOXC9-201ENST00000303450 UBTFP17480 764 aaKnown RBP40.02■■■■■ 4
HOXC9-201ENST00000303450 ARHGEF11O15085 1522 aa40■■■■□ 3.99
HOXC9-201ENST00000303450 PRG4Q92954 1404 aaPredicted RBP39.95■■■■□ 3.99
HOXC9-201ENST00000303450 RIMBP3CA6NJZ7 1639 aa39.94■■■■□ 3.98
HOXC9-201ENST00000303450 RIMBP3BA6NNM3 1639 aa39.94■■■■□ 3.98
HOXC9-201ENST00000303450 RIMBP3Q9UFD9 1639 aa39.94■■■■□ 3.98
HOXC9-201ENST00000303450 ERCC6L2Q5T890 1561 aa39.86■■■■□ 3.97
HOXC9-201ENST00000303450 UGGT2Q9NYU1 1516 aa39.86■■■■□ 3.97
HOXC9-201ENST00000303450 CARMIL2Q6F5E8 1435 aa39.8■■■■□ 3.96
HOXC9-201ENST00000303450 RANGAP1P46060 587 aaPredicted RBP39.75■■■■□ 3.95
HOXC9-201ENST00000303450 DISP1Q96F81 1524 aa39.73■■■■□ 3.95
HOXC9-201ENST00000303450 LOC105371045A0A1W2PR82 267 aa39.72■■■■□ 3.95
HOXC9-201ENST00000303450 ARAP1Q96P48 1450 aa39.71■■■■□ 3.95
HOXC9-201ENST00000303450 TNIKQ9UKE5 1360 aa39.69■■■■□ 3.94
HOXC9-201ENST00000303450 KIAA0556O60303 1618 aa39.68■■■■□ 3.94
HOXC9-201ENST00000303450 CYB5RLQ6IPT4 315 aa39.66■■■■□ 3.94
HOXC9-201ENST00000303450 SAMD9Q5K651 1589 aa39.59■■■■□ 3.93
HOXC9-201ENST00000303450 P3H3Q8IVL6 736 aa39.58■■■■□ 3.93
HOXC9-201ENST00000303450 TTBK1Q5TCY1 1321 aaPredicted RBP39.57■■■■□ 3.93
HOXC9-201ENST00000303450 PTPRGP23470 1445 aa39.56■■■■□ 3.92
HOXC9-201ENST00000303450 EFCAB5A4FU69 1503 aa39.54■■■■□ 3.92
HOXC9-201ENST00000303450 ARHGAP35Q9NRY4 1499 aa39.43■■■■□ 3.9
HOXC9-201ENST00000303450 FHOD3Q2V2M9 1422 aa39.42■■■■□ 3.9
HOXC9-201ENST00000303450 CLIP1P30622 1438 aa39.42■■■■□ 3.9
HOXC9-201ENST00000303450 CEP162Q5TB80 1403 aa39.36■■■■□ 3.89
HOXC9-201ENST00000303450 UACAQ9BZF9 1416 aa39.3■■■■□ 3.88
HOXC9-201ENST00000303450 PLB1Q6P1J6 1458 aa39.24■■■■□ 3.87
HOXC9-201ENST00000303450 ADCY10Q96PN6 1610 aa39.23■■■■□ 3.87
HOXC9-201ENST00000303450 ABCC2Q92887 1545 aa39.2■■■■□ 3.87
HOXC9-201ENST00000303450 UHRF1BP1LA0JNW5 1464 aa39.2■■■■□ 3.87
HOXC9-201ENST00000303450 FMN1Q68DA7 1419 aa39.2■■■■□ 3.87
HOXC9-201ENST00000303450 ABCA8O94911 1581 aa39.19■■■■□ 3.86
HOXC9-201ENST00000303450 NPM1P06748 294 aaKnown RBP eCLIP39.14■■■■□ 3.86
HOXC9-201ENST00000303450 RAPGEF6Q8TEU7 1601 aa39.12■■■■□ 3.85
HOXC9-201ENST00000303450 KDM5BQ9UGL1 1544 aa39.01■■■■□ 3.84
HOXC9-201ENST00000303450 ATP1B4Q9UN42 357 aaPredicted RBP38.99■■■■□ 3.83
HOXC9-201ENST00000303450 ARID3CA6NKF2 412 aa38.98■■■■□ 3.83
HOXC9-201ENST00000303450 NUP153P49790 1475 aaKnown RBP38.98■■■■□ 3.83
HOXC9-201ENST00000303450 ZCCHC11Q5TAX3 1644 aaKnown RBP38.95■■■■□ 3.83
HOXC9-201ENST00000303450 HECW1Q76N89 1606 aa38.93■■■■□ 3.82
HOXC9-201ENST00000303450 CASKIN1Q8WXD9 1431 aa38.93■■■■□ 3.82
HOXC9-201ENST00000303450 PCF11O94913 1555 aaKnown RBP38.92■■■■□ 3.82
HOXC9-201ENST00000303450 ATP10BO94823 1461 aa38.9■■■■□ 3.82
HOXC9-201ENST00000303450 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.88■■■■□ 3.81
HOXC9-201ENST00000303450 HNRNPUL2Q1KMD3 747 aaKnown RBP38.88■■■■□ 3.81
HOXC9-201ENST00000303450 MAPKBP1O60336 1514 aa38.87■■■■□ 3.81
HOXC9-201ENST00000303450 FYCO1Q9BQS8 1478 aa38.87■■■■□ 3.81
HOXC9-201ENST00000303450 VPS8Q8N3P4 1428 aa38.85■■■■□ 3.81
HOXC9-201ENST00000303450 ASXL2Q76L83 1435 aa38.81■■■■□ 3.8
HOXC9-201ENST00000303450 EPRSP07814 1512 aaKnown RBP38.81■■■■□ 3.8
HOXC9-201ENST00000303450 CDK13Q14004 1512 aaKnown RBP38.77■■■■□ 3.8
HOXC9-201ENST00000303450 LRRIQ1Q96JM4 1722 aa38.73■■■■□ 3.79
HOXC9-201ENST00000303450 CCDC18Q5T9S5 1454 aa38.72■■■■□ 3.79
HOXC9-201ENST00000303450 WDR7Q9Y4E6 1490 aa38.7■■■■□ 3.79
HOXC9-201ENST00000303450 TRHP20396 242 aaPredicted RBP38.69■■■■□ 3.78
HOXC9-201ENST00000303450 PLEKHD1A6NEE1 506 aa38.68■■■■□ 3.78
HOXC9-201ENST00000303450 CDK11AQ9UQ88 783 aaPredicted RBP38.66■■■■□ 3.78
HOXC9-201ENST00000303450 ABCC10Q5T3U5 1492 aa38.63■■■■□ 3.77
HOXC9-201ENST00000303450 KCNH8Q96L42 1107 aa38.61■■■■□ 3.77
HOXC9-201ENST00000303450 FAM69CQ0P6D2 419 aa38.58■■■■□ 3.77
HOXC9-201ENST00000303450 DIP2BQ9P265 1576 aa38.58■■■■□ 3.77
HOXC9-201ENST00000303450 KIF13AQ9H1H9 1805 aa38.53■■■■□ 3.76
HOXC9-201ENST00000303450 APLP2Q06481 763 aa38.49■■■■□ 3.75
HOXC9-201ENST00000303450 TROQ12816 1431 aaPredicted RBP38.47■■■■□ 3.75
HOXC9-201ENST00000303450 GLI2P10070 1586 aa38.47■■■■□ 3.75
HOXC9-201ENST00000303450 CFAP43Q8NDM7 1665 aa38.46■■■■□ 3.75
HOXC9-201ENST00000303450 TIAM1Q13009 1591 aa38.46■■■■□ 3.75
HOXC9-201ENST00000303450 MAGI3Q5TCQ9 1506 aa38.43■■■■□ 3.74
HOXC9-201ENST00000303450 MTUS2Q5JR59 1369 aa38.42■■■■□ 3.74
HOXC9-201ENST00000303450 MAP3K1Q13233 1512 aa38.42■■■■□ 3.74
HOXC9-201ENST00000303450 KIF14Q15058 1648 aa38.35■■■■□ 3.73
HOXC9-201ENST00000303450 ABCA9Q8IUA7 1624 aa38.34■■■■□ 3.73
HOXC9-201ENST00000303450 EHBP1L1Q8N3D4 1523 aa38.33■■■■□ 3.73
HOXC9-201ENST00000303450 MAP3K4Q9Y6R4 1608 aa38.32■■■■□ 3.73
HOXC9-201ENST00000303450 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.31■■■■□ 3.72
HOXC9-201ENST00000303450 CD109Q6YHK3 1445 aa38.3■■■■□ 3.72
HOXC9-201ENST00000303450 LRRC9Q6ZRR7 1453 aa38.3■■■■□ 3.72
HOXC9-201ENST00000303450 TSPOAP1O95153 1857 aa38.29■■■■□ 3.72
HOXC9-201ENST00000303450 KANK4Q5T7N3 995 aaPredicted RBP38.27■■■■□ 3.72
HOXC9-201ENST00000303450 TTC37Q6PGP7 1564 aa38.26■■■■□ 3.72
HOXC9-201ENST00000303450 SUPT6HQ7KZ85 1726 aaKnown RBP38.17■■■■□ 3.7
HOXC9-201ENST00000303450 PPRC1Q5VV67 1664 aaKnown RBP38.16■■■■□ 3.7
HOXC9-201ENST00000303450 TEX14Q8IWB6 1497 aa38.14■■■■□ 3.7
HOXC9-201ENST00000303450 MYO5CQ9NQX4 1742 aa38.13■■■■□ 3.69
HOXC9-201ENST00000303450 NCOA2Q15596 1464 aa38.11■■■■□ 3.69
HOXC9-201ENST00000303450 PLCH2O75038 1416 aa38.1■■■■□ 3.69
HOXC9-201ENST00000303450 CCNB3Q8WWL7 1395 aa38.09■■■■□ 3.69
HOXC9-201ENST00000303450 CDC42BPAQ5VT25 1732 aa38.03■■■■□ 3.68
HOXC9-201ENST00000303450 GPATCH8Q9UKJ3 1502 aaKnown RBP38.03■■■■□ 3.68
HOXC9-201ENST00000303450 ARAP3Q8WWN8 1544 aa38.02■■■■□ 3.68
HOXC9-201ENST00000303450 PREX2Q70Z35 1606 aa38.01■■■■□ 3.68
HOXC9-201ENST00000303450 FANCAO15360 1455 aa38.01■■■■□ 3.67
HOXC9-201ENST00000303450 ARHGAP5Q13017 1502 aa38■■■■□ 3.67
HOXC9-201ENST00000303450 EFCAB2Q5VUJ9 269 aa37.99■■■■□ 3.67
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms