RNA–Protein interactions for RNA: ENST00000298396.6

SSX3-201, Transcript of SSX family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSX3, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-201ENST00000298396 SYNJ1O43426 1573 aa10.32□□□□□ -0.76
SSX3-201ENST00000298396 BIVM-ERCC5R4GMW8 1640 aa10.32□□□□□ -0.76
SSX3-201ENST00000298396 CUX2O14529 1486 aa10.3□□□□□ -0.76
SSX3-201ENST00000298396 TOP2BQ02880 1626 aa10.29□□□□□ -0.76
SSX3-201ENST00000298396 WDR97A6NE52 1622 aa10.27□□□□□ -0.77
SSX3-201ENST00000298396 TARBP1Q13395 1621 aaKnown RBP10.26□□□□□ -0.77
SSX3-201ENST00000298396 FKBP8Q14318 412 aa10.26□□□□□ -0.77
SSX3-201ENST00000298396 WRNQ14191 1432 aaPredicted RBP eCLIP10.25□□□□□ -0.77
SSX3-201ENST00000298396 POLA1P09884 1462 aaPredicted RBP10.25□□□□□ -0.77
SSX3-201ENST00000298396 FGD5Q6ZNL6 1462 aa10.24□□□□□ -0.77
SSX3-201ENST00000298396 RAD54L2Q9Y4B4 1467 aa10.21□□□□□ -0.78
SSX3-201ENST00000298396 PROM2Q8N271 834 aa10.2□□□□□ -0.78
SSX3-201ENST00000298396 ZNF608Q9ULD9 1512 aaPredicted RBP10.18□□□□□ -0.78
SSX3-201ENST00000298396 IFT140Q96RY7 1462 aa10.18□□□□□ -0.78
SSX3-201ENST00000298396 EIF4G3O43432 1585 aaKnown RBP10.18□□□□□ -0.78
SSX3-201ENST00000298396 SPDYE4A6NLX3 237 aa10.17□□□□□ -0.78
SSX3-201ENST00000298396 PBRM1Q86U86 1689 aa10.15□□□□□ -0.78
SSX3-201ENST00000298396 ABCA5Q8WWZ7 1642 aa10.15□□□□□ -0.78
SSX3-201ENST00000298396 ABCA10Q8WWZ4 1543 aa10.15□□□□□ -0.78
SSX3-201ENST00000298396 SOGA1O94964 1423 aa10.15□□□□□ -0.79
SSX3-201ENST00000298396 OSCARQ8IYS5 282 aa10.14□□□□□ -0.79
SSX3-201ENST00000298396 SPDYE2BA6NHP3 402 aa10.13□□□□□ -0.79
SSX3-201ENST00000298396 SPDYE6P0CI01 402 aa10.13□□□□□ -0.79
SSX3-201ENST00000298396 SPDYE2Q495Y8 402 aa10.13□□□□□ -0.79
SSX3-201ENST00000298396 AQRO60306 1485 aaKnown RBP eCLIP10.11□□□□□ -0.794e-6■■□□□ 13.4
SSX3-201ENST00000298396 SSUH2Q9Y2M2 353 aa10.11□□□□□ -0.79
SSX3-201ENST00000298396 TDRD9Q8NDG6 1382 aaKnown RBP10.09□□□□□ -0.79
SSX3-201ENST00000298396 CHD1O14646 1710 aa10.07□□□□□ -0.8
SSX3-201ENST00000298396 RUSC2Q8N2Y8 1516 aa10.07□□□□□ -0.8
SSX3-201ENST00000298396 GAPVD1Q14C86 1478 aa10.06□□□□□ -0.8
SSX3-201ENST00000298396 TRIM41Q8WV44 630 aa10.04□□□□□ -0.8
SSX3-201ENST00000298396 ADAMTS12P58397 1594 aa10.04□□□□□ -0.8
SSX3-201ENST00000298396 GRIN2BQ13224 1484 aa10.03□□□□□ -0.8
SSX3-201ENST00000298396 SNAPC4Q5SXM2 1469 aa10.03□□□□□ -0.8
SSX3-201ENST00000298396 ERICH3Q5RHP9 1530 aa10.02□□□□□ -0.8
SSX3-201ENST00000298396 POTEHQ6S545 545 aa10.01□□□□□ -0.81
SSX3-201ENST00000298396 ZNF692Q9BU19 519 aaPredicted RBP10.01□□□□□ -0.81
SSX3-201ENST00000298396 KIF27Q86VH2 1401 aa10□□□□□ -0.81
SSX3-201ENST00000298396 MAGI1Q96QZ7 1491 aaPredicted RBP10□□□□□ -0.81
SSX3-201ENST00000298396 RBM42Q9BTD8 480 aaKnown RBP10□□□□□ -0.81
SSX3-201ENST00000298396 CUL7Q14999 1698 aa9.99□□□□□ -0.81
SSX3-201ENST00000298396 IGF1RP08069 1367 aa9.98□□□□□ -0.81
SSX3-201ENST00000298396 SYNJ2O15056 1496 aa9.96□□□□□ -0.82
SSX3-201ENST00000298396 CEP170Q5SW79 1584 aa9.93□□□□□ -0.82
SSX3-201ENST00000298396 GRIN2AQ12879 1464 aa9.93□□□□□ -0.82
SSX3-201ENST00000298396 FHAD1B1AJZ9 1412 aa9.93□□□□□ -0.82
SSX3-201ENST00000298396 AKT1S1Q96B36 256 aa9.93□□□□□ -0.82
SSX3-201ENST00000298396 PRXQ9BXM0 1461 aa9.91□□□□□ -0.82
SSX3-201ENST00000298396 CLASP1Q7Z460 1538 aa9.91□□□□□ -0.82
SSX3-201ENST00000298396 EEA1Q15075 1411 aa9.9□□□□□ -0.82
SSX3-201ENST00000298396 FBXO3Q9UK99 471 aa9.9□□□□□ -0.82
SSX3-201ENST00000298396 KIF21BO75037 1637 aa9.89□□□□□ -0.83
SSX3-201ENST00000298396 CARMIL1Q5VZK9 1371 aa9.89□□□□□ -0.83
SSX3-201ENST00000298396 CTTNBP2Q8WZ74 1663 aa9.89□□□□□ -0.83
SSX3-201ENST00000298396 NUP160Q12769 1436 aa9.89□□□□□ -0.83
SSX3-201ENST00000298396 RAPGEF2Q9Y4G8 1499 aa9.87□□□□□ -0.83
SSX3-201ENST00000298396 SHROOM2Q13796 1616 aa9.86□□□□□ -0.83
SSX3-201ENST00000298396 FAM9AQ8IZU1 332 aaPredicted RBP9.86□□□□□ -0.83
SSX3-201ENST00000298396 CHMP7Q8WUX9 453 aaPredicted RBP9.85□□□□□ -0.83
SSX3-201ENST00000298396 ERCC6L2Q5T890 1561 aa9.82□□□□□ -0.84
SSX3-201ENST00000298396 IQGAP2Q13576 1575 aa9.81□□□□□ -0.84
SSX3-201ENST00000298396 STAG3Q9UJ98 1225 aa9.81□□□□□ -0.84
SSX3-201ENST00000298396 REM2Q8IYK8 340 aaPredicted RBP9.8□□□□□ -0.84
SSX3-201ENST00000298396 RIMBP3CA6NJZ7 1639 aa9.8□□□□□ -0.84
SSX3-201ENST00000298396 RIMBP3BA6NNM3 1639 aa9.8□□□□□ -0.84
SSX3-201ENST00000298396 RIMBP3Q9UFD9 1639 aa9.8□□□□□ -0.84
SSX3-201ENST00000298396 KIAA0586Q9BVV6 1533 aa9.8□□□□□ -0.84
SSX3-201ENST00000298396 VASPP50552 380 aaPredicted RBP9.79□□□□□ -0.84
SSX3-201ENST00000298396 GOLGA3Q08378 1498 aa9.78□□□□□ -0.84
SSX3-201ENST00000298396 ARHGEF11O15085 1522 aa9.77□□□□□ -0.84
SSX3-201ENST00000298396 SPDYE1Q8NFV5 336 aaPredicted RBP9.77□□□□□ -0.85
SSX3-201ENST00000298396 DNAJC5Q9H3Z4 198 aa9.76□□□□□ -0.85
SSX3-201ENST00000298396 UGGT2Q9NYU1 1516 aa9.76□□□□□ -0.85
SSX3-201ENST00000298396 SAMD9Q5K651 1589 aa9.75□□□□□ -0.85
SSX3-201ENST00000298396 DISP1Q96F81 1524 aa9.74□□□□□ -0.85
SSX3-201ENST00000298396 KIAA0556O60303 1618 aa9.74□□□□□ -0.85
SSX3-201ENST00000298396 ARAP1Q96P48 1450 aa9.72□□□□□ -0.85
SSX3-201ENST00000298396 PRG4Q92954 1404 aaPredicted RBP9.72□□□□□ -0.85
SSX3-201ENST00000298396 JPH4Q96JJ6 628 aa9.7□□□□□ -0.86
SSX3-201ENST00000298396 PITPNM1O00562 1244 aa9.69□□□□□ -0.86
SSX3-201ENST00000298396 LOC105371045A0A1W2PR82 267 aa9.68□□□□□ -0.86
SSX3-201ENST00000298396 TNIKQ9UKE5 1360 aa9.67□□□□□ -0.86
SSX3-201ENST00000298396 ARHGAP35Q9NRY4 1499 aa9.66□□□□□ -0.86
SSX3-201ENST00000298396 IFNLR1Q8IU57 520 aaPredicted RBP9.66□□□□□ -0.86
SSX3-201ENST00000298396 EFCAB5A4FU69 1503 aa9.66□□□□□ -0.86
SSX3-201ENST00000298396 UBTFP17480 764 aaKnown RBP9.65□□□□□ -0.86
SSX3-201ENST00000298396 ADCY10Q96PN6 1610 aa9.64□□□□□ -0.87
SSX3-201ENST00000298396 LRRIQ1Q96JM4 1722 aa9.64□□□□□ -0.87
SSX3-201ENST00000298396 FHOD3Q2V2M9 1422 aa9.63□□□□□ -0.87
SSX3-201ENST00000298396 CARMIL2Q6F5E8 1435 aa9.63□□□□□ -0.87
SSX3-201ENST00000298396 AMER1Q5JTC6 1135 aaPredicted RBP9.62□□□□□ -0.87
SSX3-201ENST00000298396 CEP162Q5TB80 1403 aa9.62□□□□□ -0.87
SSX3-201ENST00000298396 ABCA8O94911 1581 aa9.62□□□□□ -0.87
SSX3-201ENST00000298396 RANGAP1P46060 587 aaPredicted RBP9.61□□□□□ -0.87
SSX3-201ENST00000298396 CLIP1P30622 1438 aa9.6□□□□□ -0.87
SSX3-201ENST00000298396 RAPGEF6Q8TEU7 1601 aa9.6□□□□□ -0.87
SSX3-201ENST00000298396 P3H3Q8IVL6 736 aa9.59□□□□□ -0.87
SSX3-201ENST00000298396 CLEC11AQ9Y240 323 aa9.59□□□□□ -0.87
SSX3-201ENST00000298396 PLB1Q6P1J6 1458 aa9.59□□□□□ -0.87
SSX3-201ENST00000298396 PTPRGP23470 1445 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms