RNA–Protein interactions for RNA: ENST00000298396.6

SSX3-201, Transcript of SSX family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSX3, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-201ENST00000298396 AEBP2Q6ZN18 517 aaPredicted RBP17.81■□□□□ 0.44
SSX3-201ENST00000298396 CHIC1Q5VXU3 224 aa17.52■□□□□ 0.4
SSX3-201ENST00000298396 PHF23Q9BUL5 403 aaPredicted RBP15.42■□□□□ 0.06
SSX3-201ENST00000298396 SENP3Q9H4L4 574 aaPredicted RBP15.07■□□□□ 0
SSX3-201ENST00000298396 NISCHQ9Y2I1 1504 aa14.28□□□□□ -0.12
SSX3-201ENST00000298396 PLPPR3Q6T4P5 718 aa14.24□□□□□ -0.13
SSX3-201ENST00000298396 FOXD1Q16676 465 aa13.96□□□□□ -0.17
SSX3-201ENST00000298396 PPP6R1Q9UPN7 881 aa13.53□□□□□ -0.24
SSX3-201ENST00000298396 ADRA2BP18089 450 aa13.48□□□□□ -0.25
SSX3-201ENST00000298396 PIAS4Q8N2W9 510 aaPredicted RBP13.13□□□□□ -0.31
SSX3-201ENST00000298396 POTEDQ86YR6 584 aa12.87□□□□□ -0.35
SSX3-201ENST00000298396 MSH5O43196 834 aa12.83□□□□□ -0.36
SSX3-201ENST00000298396 CCDC180Q9P1Z9 1646 aa12.68□□□□□ -0.38
SSX3-201ENST00000298396 PPP4R3CPQ6ZMV5 832 aa12.54□□□□□ -0.4
SSX3-201ENST00000298396 KCNA4P22459 653 aa12.38□□□□□ -0.43
SSX3-201ENST00000298396 SCAF1Q9H7N4 1312 aaKnown RBP12.33□□□□□ -0.44
SSX3-201ENST00000298396 NCBP3Q53F19 620 aaKnown RBP12.23□□□□□ -0.45
SSX3-201ENST00000298396 CNKSR2Q8WXI2 1034 aa12.19□□□□□ -0.46
SSX3-201ENST00000298396 ABCC9O60706 1549 aa12.18□□□□□ -0.46
SSX3-201ENST00000298396 MAPK8IP2Q13387 824 aaPredicted RBP12.18□□□□□ -0.46
SSX3-201ENST00000298396 NPM3O75607 178 aaKnown RBP12.09□□□□□ -0.47
SSX3-201ENST00000298396 DMRT2Q9Y5R5 561 aa12.08□□□□□ -0.48
SSX3-201ENST00000298396 RNF216Q9NWF9 866 aaPredicted RBP11.95□□□□□ -0.5
SSX3-201ENST00000298396 DNAJC5BQ9UF47 199 aa11.95□□□□□ -0.5
SSX3-201ENST00000298396 ZCCHC6Q5VYS8 1495 aaKnown RBP11.95□□□□□ -0.5
SSX3-201ENST00000298396 HOXD11P31277 338 aaPredicted RBP11.91□□□□□ -0.5
SSX3-201ENST00000298396 DCAF1Q9Y4B6 1507 aa11.81□□□□□ -0.52
SSX3-201ENST00000298396 NACADO15069 1562 aa11.81□□□□□ -0.52
SSX3-201ENST00000298396 SLC4A1APQ9BWU0 796 aaKnown RBP11.79□□□□□ -0.52
SSX3-201ENST00000298396 MYO15BQ96JP2 1530 aa11.79□□□□□ -0.52
SSX3-201ENST00000298396 RB1CC1Q8TDY2 1594 aa11.79□□□□□ -0.52
SSX3-201ENST00000298396 UNC13AQ9UPW8 1703 aa11.72□□□□□ -0.53
SSX3-201ENST00000298396 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.53
SSX3-201ENST00000298396 SCRIBQ14160 1630 aa11.57□□□□□ -0.56
SSX3-201ENST00000298396 BICRAQ9NZM4 1560 aa11.52□□□□□ -0.57
SSX3-201ENST00000298396 EHMT2Q96KQ7 1210 aa11.49□□□□□ -0.57
SSX3-201ENST00000298396 CSRNP3Q8WYN3 585 aa11.45□□□□□ -0.58
SSX3-201ENST00000298396 ZBTB22O15209 634 aa11.44□□□□□ -0.58
SSX3-201ENST00000298396 SLC4A2P04920 1241 aa11.42□□□□□ -0.58
SSX3-201ENST00000298396 FOXD4L1Q9NU39 408 aa11.39□□□□□ -0.59
SSX3-201ENST00000298396 PABPN1Q86U42 306 aaKnown RBP eCLIP11.37□□□□□ -0.59
SSX3-201ENST00000298396 SHROOM4Q9ULL8 1493 aa11.33□□□□□ -0.6
SSX3-201ENST00000298396 DCAF8L1A6NGE4 600 aa11.32□□□□□ -0.6
SSX3-201ENST00000298396 MYCNP04198 464 aaPredicted RBP11.18□□□□□ -0.62
SSX3-201ENST00000298396 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.18□□□□□ -0.62
SSX3-201ENST00000298396 EIF4G1Q04637 1599 aaKnown RBP11.15□□□□□ -0.62
SSX3-201ENST00000298396 CECR2Q9BXF3 1484 aa11.12□□□□□ -0.63
SSX3-201ENST00000298396 U3KPZ7 1027 aaPredicted RBP11.12□□□□□ -0.63
SSX3-201ENST00000298396 SMARCA4P51532 1647 aa11.08□□□□□ -0.64
SSX3-201ENST00000298396 CC2D2AQ9P2K1 1620 aa11.08□□□□□ -0.64
SSX3-201ENST00000298396 ATXN8OSP0DMR3 200 aa11.04□□□□□ -0.64
SSX3-201ENST00000298396 RNF39Q9H2S5 420 aa11.04□□□□□ -0.64
SSX3-201ENST00000298396 MROH2BQ7Z745 1585 aa11.03□□□□□ -0.64
SSX3-201ENST00000298396 BAZ1AQ9NRL2 1556 aaPredicted RBP11.03□□□□□ -0.64
SSX3-201ENST00000298396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.99□□□□□ -0.65
SSX3-201ENST00000298396 HNRNPUL2Q1KMD3 747 aaKnown RBP10.99□□□□□ -0.65
SSX3-201ENST00000298396 CACNB1Q02641 598 aaPredicted RBP10.97□□□□□ -0.65
SSX3-201ENST00000298396 SAMD1Q6SPF0 538 aaPredicted RBP10.97□□□□□ -0.65
SSX3-201ENST00000298396 PEG3Q9GZU2 1588 aa10.97□□□□□ -0.65
SSX3-201ENST00000298396 WIZO95785 1651 aa10.96□□□□□ -0.65
SSX3-201ENST00000298396 ATAD2BQ9ULI0 1458 aa10.93□□□□□ -0.66
SSX3-201ENST00000298396 RSF1Q96T23 1441 aaPredicted RBP10.92□□□□□ -0.66
SSX3-201ENST00000298396 SMARCA2P51531 1590 aa10.91□□□□□ -0.66
SSX3-201ENST00000298396 C1QBPQ07021 282 aaKnown RBP10.9□□□□□ -0.66
SSX3-201ENST00000298396 HMGXB3Q12766 1538 aa10.89□□□□□ -0.67
SSX3-201ENST00000298396 NCAPD3P42695 1498 aa10.88□□□□□ -0.67
SSX3-201ENST00000298396 APLP2Q06481 763 aa10.84□□□□□ -0.67
SSX3-201ENST00000298396 ATF5Q9Y2D1 282 aaPredicted RBP10.84□□□□□ -0.67
SSX3-201ENST00000298396 BAZ1BQ9UIG0 1483 aaKnown RBP10.82□□□□□ -0.68
SSX3-201ENST00000298396 TOP2AP11388 1531 aaKnown RBP10.8□□□□□ -0.68
SSX3-201ENST00000298396 SPINK5Q9NQ38 1064 aaPredicted RBP10.72□□□□□ -0.69
SSX3-201ENST00000298396 ZNF219Q9P2Y4 722 aaPredicted RBP10.69□□□□□ -0.7
SSX3-201ENST00000298396 SUPT5HO00267 1087 aaKnown RBP10.67□□□□□ -0.7
SSX3-201ENST00000298396 CCDC88BA6NC98 1476 aa10.66□□□□□ -0.7
SSX3-201ENST00000298396 PRDM2Q13029 1718 aa10.64□□□□□ -0.71
SSX3-201ENST00000298396 NESP48681 1621 aa10.63□□□□□ -0.71
SSX3-201ENST00000298396 CAPN15O75808 1086 aa10.61□□□□□ -0.71
SSX3-201ENST00000298396 LAMC3Q9Y6N6 1575 aa10.59□□□□□ -0.71
SSX3-201ENST00000298396 KIF21AQ7Z4S6 1674 aa10.58□□□□□ -0.72
SSX3-201ENST00000298396 TRHP20396 242 aaPredicted RBP10.57□□□□□ -0.72
SSX3-201ENST00000298396 CFTRP13569 1480 aa10.55□□□□□ -0.72
SSX3-201ENST00000298396 CADPSQ9ULU8 1353 aa10.54□□□□□ -0.72
SSX3-201ENST00000298396 DSG3P32926 999 aa10.52□□□□□ -0.73
SSX3-201ENST00000298396 THOC2Q8NI27 1593 aaKnown RBP10.48□□□□□ -0.73
SSX3-201ENST00000298396 POLA2Q14181 598 aa10.47□□□□□ -0.73
SSX3-201ENST00000298396 FANCD2Q9BXW9 1451 aa10.45□□□□□ -0.74
SSX3-201ENST00000298396 PDS5BQ9NTI5 1447 aa10.44□□□□□ -0.74
SSX3-201ENST00000298396 ERCC6Q03468 1493 aa10.42□□□□□ -0.74
SSX3-201ENST00000298396 MKRN4PQ13434 485 aaPredicted RBP10.42□□□□□ -0.74
SSX3-201ENST00000298396 CEP164Q9UPV0 1460 aa10.42□□□□□ -0.74
SSX3-201ENST00000298396 ABCB7O75027 752 aa10.41□□□□□ -0.74
SSX3-201ENST00000298396 URB2Q14146 1524 aaKnown RBP10.39□□□□□ -0.75
SSX3-201ENST00000298396 WDR62O43379 1518 aa10.38□□□□□ -0.75
SSX3-201ENST00000298396 MRC2Q9UBG0 1479 aa10.38□□□□□ -0.75
SSX3-201ENST00000298396 ZBTB12Q9Y330 459 aaPredicted RBP10.38□□□□□ -0.75
SSX3-201ENST00000298396 ABCC8Q09428 1581 aa10.36□□□□□ -0.75
SSX3-201ENST00000298396 CUX1P39880 1505 aa10.34□□□□□ -0.75
SSX3-201ENST00000298396 DNMBPQ6XZF7 1577 aa10.34□□□□□ -0.75
SSX3-201ENST00000298396 TOPBP1Q92547 1522 aa10.33□□□□□ -0.76
SSX3-201ENST00000298396 FBLN2P98095 1184 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms