RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 GRIN2AQ12879 1464 aa17.71■□□□□ 0.43
SYNGAP1-201ENST00000293748 NPM1P06748 294 aaKnown RBP eCLIP17.71■□□□□ 0.43
SYNGAP1-201ENST00000293748 CUL7Q14999 1698 aa17.7■□□□□ 0.42
SYNGAP1-201ENST00000293748 PBRM1Q86U86 1689 aa17.69■□□□□ 0.42
SYNGAP1-201ENST00000293748 CARMIL2Q6F5E8 1435 aa17.68■□□□□ 0.42
SYNGAP1-201ENST00000293748 JPH4Q96JJ6 628 aa17.67■□□□□ 0.42
SYNGAP1-201ENST00000293748 ADAMTS12P58397 1594 aa17.66■□□□□ 0.42
SYNGAP1-201ENST00000293748 CYB5RLQ6IPT4 315 aa17.61■□□□□ 0.41
SYNGAP1-201ENST00000293748 NEFLP07196 543 aa17.6■□□□□ 0.41
SYNGAP1-201ENST00000293748 RUSC2Q8N2Y8 1516 aa17.58■□□□□ 0.4
SYNGAP1-201ENST00000293748 GOLGA3Q08378 1498 aa17.58■□□□□ 0.4
SYNGAP1-201ENST00000293748 KIAA0586Q9BVV6 1533 aa17.58■□□□□ 0.4
SYNGAP1-201ENST00000293748 CHD1O14646 1710 aa17.57■□□□□ 0.4
SYNGAP1-201ENST00000293748 ATP1B4Q9UN42 357 aaPredicted RBP17.56■□□□□ 0.4
SYNGAP1-201ENST00000293748 NUP160Q12769 1436 aa17.55■□□□□ 0.4
SYNGAP1-201ENST00000293748 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.54■□□□□ 0.4
SYNGAP1-201ENST00000293748 HNRNPUL2Q1KMD3 747 aaKnown RBP17.54■□□□□ 0.4
SYNGAP1-201ENST00000293748 PRG4Q92954 1404 aaPredicted RBP17.53■□□□□ 0.4
SYNGAP1-201ENST00000293748 HRCP23327 699 aa17.49■□□□□ 0.39
SYNGAP1-201ENST00000293748 P3H3Q8IVL6 736 aa17.49■□□□□ 0.39
SYNGAP1-201ENST00000293748 PRXQ9BXM0 1461 aa17.49■□□□□ 0.39
SYNGAP1-201ENST00000293748 PTPRGP23470 1445 aa17.47■□□□□ 0.39
SYNGAP1-201ENST00000293748 TNIKQ9UKE5 1360 aa17.45■□□□□ 0.38
SYNGAP1-201ENST00000293748 TRHP20396 242 aaPredicted RBP17.45■□□□□ 0.38
SYNGAP1-201ENST00000293748 IQGAP2Q13576 1575 aa17.44■□□□□ 0.38
SYNGAP1-201ENST00000293748 YTHDC1Q96MU7 727 aaKnown RBP17.44■□□□□ 0.38
SYNGAP1-201ENST00000293748 ARHGEF11O15085 1522 aa17.43■□□□□ 0.38
SYNGAP1-201ENST00000293748 CEP170Q5SW79 1584 aa17.41■□□□□ 0.38
SYNGAP1-201ENST00000293748 TRIM26Q12899 539 aaPredicted RBP17.41■□□□□ 0.38
SYNGAP1-201ENST00000293748 CLASP1Q7Z460 1538 aa17.39■□□□□ 0.37
SYNGAP1-201ENST00000293748 KIF21BO75037 1637 aa17.39■□□□□ 0.37
SYNGAP1-201ENST00000293748 CDK11AQ9UQ88 783 aaPredicted RBP17.38■□□□□ 0.37
SYNGAP1-201ENST00000293748 CLIP1P30622 1438 aa17.3■□□□□ 0.36
SYNGAP1-201ENST00000293748 RIMBP3CA6NJZ7 1639 aa17.3■□□□□ 0.36
SYNGAP1-201ENST00000293748 RIMBP3BA6NNM3 1639 aa17.3■□□□□ 0.36
SYNGAP1-201ENST00000293748 RIMBP3Q9UFD9 1639 aa17.3■□□□□ 0.36
SYNGAP1-201ENST00000293748 LOC105371045A0A1W2PR82 267 aa17.28■□□□□ 0.36
SYNGAP1-201ENST00000293748 ARID3CA6NKF2 412 aa17.28■□□□□ 0.36
SYNGAP1-201ENST00000293748 UGGT2Q9NYU1 1516 aa17.28■□□□□ 0.36
SYNGAP1-201ENST00000293748 FMN1Q68DA7 1419 aa17.27■□□□□ 0.36
SYNGAP1-201ENST00000293748 PLEKHD1A6NEE1 506 aa17.26■□□□□ 0.35
SYNGAP1-201ENST00000293748 EFCAB5A4FU69 1503 aa17.25■□□□□ 0.35
SYNGAP1-201ENST00000293748 UACAQ9BZF9 1416 aa17.25■□□□□ 0.35
SYNGAP1-201ENST00000293748 CTTNBP2Q8WZ74 1663 aa17.25■□□□□ 0.35
SYNGAP1-201ENST00000293748 ARAP1Q96P48 1450 aa17.25■□□□□ 0.35
SYNGAP1-201ENST00000293748 FHOD3Q2V2M9 1422 aa17.21■□□□□ 0.35
SYNGAP1-201ENST00000293748 KCNH8Q96L42 1107 aa17.19■□□□□ 0.34
SYNGAP1-201ENST00000293748 SHROOM2Q13796 1616 aa17.18■□□□□ 0.34
SYNGAP1-201ENST00000293748 KIAA0556O60303 1618 aa17.18■□□□□ 0.34
SYNGAP1-201ENST00000293748 CEP162Q5TB80 1403 aa17.17■□□□□ 0.34
SYNGAP1-201ENST00000293748 FAM69CQ0P6D2 419 aa17.15■□□□□ 0.34
SYNGAP1-201ENST00000293748 DISP1Q96F81 1524 aa17.14■□□□□ 0.33
SYNGAP1-201ENST00000293748 ERCC6L2Q5T890 1561 aa17.11■□□□□ 0.33
SYNGAP1-201ENST00000293748 PLB1Q6P1J6 1458 aa17.1■□□□□ 0.33
SYNGAP1-201ENST00000293748 ABCC2Q92887 1545 aa17.08■□□□□ 0.33
SYNGAP1-201ENST00000293748 MYT1LQ9UL68 1186 aa17.08■□□□□ 0.32
SYNGAP1-201ENST00000293748 UHRF1BP1LA0JNW5 1464 aa17.07■□□□□ 0.32
SYNGAP1-201ENST00000293748 PPARGC1BQ86YN6 1023 aaKnown RBP17.06■□□□□ 0.32
SYNGAP1-201ENST00000293748 MTUS2Q5JR59 1369 aa17.06■□□□□ 0.32
SYNGAP1-201ENST00000293748 ARHGAP35Q9NRY4 1499 aa17.05■□□□□ 0.32
SYNGAP1-201ENST00000293748 DAXXQ9UER7 740 aaPredicted RBP17.04■□□□□ 0.32
SYNGAP1-201ENST00000293748 CCDC18Q5T9S5 1454 aa17■□□□□ 0.31
SYNGAP1-201ENST00000293748 SAMD9Q5K651 1589 aa17■□□□□ 0.31
SYNGAP1-201ENST00000293748 HECW1Q76N89 1606 aa17■□□□□ 0.31
SYNGAP1-201ENST00000293748 ASXL2Q76L83 1435 aa17■□□□□ 0.31
SYNGAP1-201ENST00000293748 CASKIN1Q8WXD9 1431 aa16.98■□□□□ 0.31
SYNGAP1-201ENST00000293748 RAPGEF6Q8TEU7 1601 aa16.98■□□□□ 0.31
SYNGAP1-201ENST00000293748 VPS8Q8N3P4 1428 aa16.96■□□□□ 0.3
SYNGAP1-201ENST00000293748 WDR7Q9Y4E6 1490 aa16.94■□□□□ 0.3
SYNGAP1-201ENST00000293748 FYCO1Q9BQS8 1478 aa16.94■□□□□ 0.3
SYNGAP1-201ENST00000293748 KDM5BQ9UGL1 1544 aa16.94■□□□□ 0.3
SYNGAP1-201ENST00000293748 ABCA8O94911 1581 aa16.92■□□□□ 0.3
SYNGAP1-201ENST00000293748 EFCAB2Q5VUJ9 269 aa16.92■□□□□ 0.3
SYNGAP1-201ENST00000293748 ZNF777Q9ULD5 760 aaPredicted RBP16.92■□□□□ 0.3
SYNGAP1-201ENST00000293748 TEX14Q8IWB6 1497 aa16.91■□□□□ 0.3
SYNGAP1-201ENST00000293748 ATP10BO94823 1461 aa16.91■□□□□ 0.3
SYNGAP1-201ENST00000293748 DIEXFQ68CQ4 756 aaKnown RBP16.9■□□□□ 0.3
SYNGAP1-201ENST00000293748 MAPKBP1O60336 1514 aa16.9■□□□□ 0.3
SYNGAP1-201ENST00000293748 ADCY10Q96PN6 1610 aa16.89■□□□□ 0.29
SYNGAP1-201ENST00000293748 CCNB3Q8WWL7 1395 aa16.89■□□□□ 0.29
SYNGAP1-201ENST00000293748 EPRSP07814 1512 aaKnown RBP16.89■□□□□ 0.29
SYNGAP1-201ENST00000293748 CD109Q6YHK3 1445 aa16.89■□□□□ 0.29
SYNGAP1-201ENST00000293748 ABCC10Q5T3U5 1492 aa16.88■□□□□ 0.29
SYNGAP1-201ENST00000293748 NUP153P49790 1475 aaKnown RBP16.88■□□□□ 0.29
SYNGAP1-201ENST00000293748 CFDP1Q9UEE9 299 aaPredicted RBP16.87■□□□□ 0.29
SYNGAP1-201ENST00000293748 TROQ12816 1431 aaPredicted RBP16.86■□□□□ 0.29
SYNGAP1-201ENST00000293748 RTL5Q5HYW3 569 aaPredicted RBP16.85■□□□□ 0.29
SYNGAP1-201ENST00000293748 ZCCHC11Q5TAX3 1644 aaKnown RBP16.83■□□□□ 0.28
SYNGAP1-201ENST00000293748 PHLDB1Q86UU1 1377 aa16.83■□□□□ 0.28
SYNGAP1-201ENST00000293748 CDK13Q14004 1512 aaKnown RBP16.82■□□□□ 0.28
SYNGAP1-201ENST00000293748 PCF11O94913 1555 aaKnown RBP16.8■□□□□ 0.28
SYNGAP1-201ENST00000293748 KIF14Q15058 1648 aa16.77■□□□□ 0.28
SYNGAP1-201ENST00000293748 TSPY4P0CV99 314 aa16.76■□□□□ 0.27
SYNGAP1-201ENST00000293748 TSPY10P0CW01 314 aa16.76■□□□□ 0.27
SYNGAP1-201ENST00000293748 ESF1Q9H501 851 aaKnown RBP16.75■□□□□ 0.27
SYNGAP1-201ENST00000293748 ITGAEP38570 1179 aa16.75■□□□□ 0.27
SYNGAP1-201ENST00000293748 FAM50AQ14320 339 aaKnown RBP16.75■□□□□ 0.27
SYNGAP1-201ENST00000293748 ARID4BQ4LE39 1312 aaPredicted RBP16.74■□□□□ 0.27
SYNGAP1-201ENST00000293748 EHBP1L1Q8N3D4 1523 aa16.74■□□□□ 0.27
SYNGAP1-201ENST00000293748 ARHGAP5Q13017 1502 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms