RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 NISCHQ9Y2I1 1504 aa25.18■■□□□ 1.62
SYNGAP1-201ENST00000293748 CCDC180Q9P1Z9 1646 aa22.22■■□□□ 1.15
SYNGAP1-201ENST00000293748 ABCC9O60706 1549 aa21.83■■□□□ 1.09
SYNGAP1-201ENST00000293748 DCAF8L2P0C7V8 631 aa21.7■■□□□ 1.06
SYNGAP1-201ENST00000293748 RB1CC1Q8TDY2 1594 aa21.06■□□□□ 0.96
SYNGAP1-201ENST00000293748 NACADO15069 1562 aa21.02■□□□□ 0.96
SYNGAP1-201ENST00000293748 ZCCHC6Q5VYS8 1495 aaKnown RBP20.96■□□□□ 0.95
SYNGAP1-201ENST00000293748 MYO15BQ96JP2 1530 aa20.82■□□□□ 0.92
SYNGAP1-201ENST00000293748 DCAF1Q9Y4B6 1507 aa20.79■□□□□ 0.92
SYNGAP1-201ENST00000293748 PABPN1Q86U42 306 aaKnown RBP eCLIP20.54■□□□□ 0.88
SYNGAP1-201ENST00000293748 SCRIBQ14160 1630 aa20.42■□□□□ 0.86
SYNGAP1-201ENST00000293748 SHROOM4Q9ULL8 1493 aa20.36■□□□□ 0.85
SYNGAP1-201ENST00000293748 UNC13AQ9UPW8 1703 aa19.98■□□□□ 0.79
SYNGAP1-201ENST00000293748 BICRAQ9NZM4 1560 aa19.98■□□□□ 0.79
SYNGAP1-201ENST00000293748 EIF4G1Q04637 1599 aaKnown RBP19.69■□□□□ 0.74
SYNGAP1-201ENST00000293748 BAZ1AQ9NRL2 1556 aaPredicted RBP19.63■□□□□ 0.73
SYNGAP1-201ENST00000293748 CECR2Q9BXF3 1484 aa19.62■□□□□ 0.73
SYNGAP1-201ENST00000293748 DNAJC5BQ9UF47 199 aa19.58■□□□□ 0.72
SYNGAP1-201ENST00000293748 CC2D2AQ9P2K1 1620 aa19.54■□□□□ 0.72
SYNGAP1-201ENST00000293748 SMARCA2P51531 1590 aa19.51■□□□□ 0.71
SYNGAP1-201ENST00000293748 SUPT5HO00267 1087 aaKnown RBP19.46■□□□□ 0.71
SYNGAP1-201ENST00000293748 SMARCA4P51532 1647 aa19.45■□□□□ 0.7
SYNGAP1-201ENST00000293748 BAZ1BQ9UIG0 1483 aaKnown RBP19.43■□□□□ 0.7
SYNGAP1-201ENST00000293748 ATAD2BQ9ULI0 1458 aa19.39■□□□□ 0.69
SYNGAP1-201ENST00000293748 NCAPD3P42695 1498 aa19.36■□□□□ 0.69
SYNGAP1-201ENST00000293748 MROH2BQ7Z745 1585 aa19.34■□□□□ 0.69
SYNGAP1-201ENST00000293748 RSF1Q96T23 1441 aaPredicted RBP19.29■□□□□ 0.68
SYNGAP1-201ENST00000293748 HMGXB3Q12766 1538 aa19.24■□□□□ 0.67
SYNGAP1-201ENST00000293748 PEG3Q9GZU2 1588 aa19.13■□□□□ 0.65
SYNGAP1-201ENST00000293748 WIZO95785 1651 aa19.09■□□□□ 0.65
SYNGAP1-201ENST00000293748 ERCC6Q03468 1493 aa19.07■□□□□ 0.64
SYNGAP1-201ENST00000293748 TOP2AP11388 1531 aaKnown RBP19.06■□□□□ 0.64
SYNGAP1-201ENST00000293748 PDS5BQ9NTI5 1447 aa18.99■□□□□ 0.63
SYNGAP1-201ENST00000293748 CADPSQ9ULU8 1353 aa18.95■□□□□ 0.62
SYNGAP1-201ENST00000293748 LAMC3Q9Y6N6 1575 aa18.84■□□□□ 0.61
SYNGAP1-201ENST00000293748 CCDC88BA6NC98 1476 aa18.83■□□□□ 0.6
SYNGAP1-201ENST00000293748 PELP1Q8IZL8 1130 aaKnown RBP18.8■□□□□ 0.6
SYNGAP1-201ENST00000293748 NESP48681 1621 aa18.75■□□□□ 0.59
SYNGAP1-201ENST00000293748 CEP164Q9UPV0 1460 aa18.74■□□□□ 0.59
SYNGAP1-201ENST00000293748 CFTRP13569 1480 aa18.72■□□□□ 0.59
SYNGAP1-201ENST00000293748 FANCD2Q9BXW9 1451 aa18.7■□□□□ 0.58
SYNGAP1-201ENST00000293748 MRC2Q9UBG0 1479 aa18.61■□□□□ 0.57
SYNGAP1-201ENST00000293748 ABCC8Q09428 1581 aa18.58■□□□□ 0.57
SYNGAP1-201ENST00000293748 CUX2O14529 1486 aa18.54■□□□□ 0.56
SYNGAP1-201ENST00000293748 TRIM41Q8WV44 630 aa18.43■□□□□ 0.54
SYNGAP1-201ENST00000293748 WRNQ14191 1432 aaPredicted RBP eCLIP18.4■□□□□ 0.541e-7■■■■■ 66.8
SYNGAP1-201ENST00000293748 KIF21AQ7Z4S6 1674 aa18.39■□□□□ 0.53
SYNGAP1-201ENST00000293748 PRDM2Q13029 1718 aa18.33■□□□□ 0.53
SYNGAP1-201ENST00000293748 DNMBPQ6XZF7 1577 aa18.33■□□□□ 0.52
SYNGAP1-201ENST00000293748 TOPBP1Q92547 1522 aa18.33■□□□□ 0.52
SYNGAP1-201ENST00000293748 WDR62O43379 1518 aa18.33■□□□□ 0.52
SYNGAP1-201ENST00000293748 IFT140Q96RY7 1462 aa18.32■□□□□ 0.52
SYNGAP1-201ENST00000293748 SOGA1O94964 1423 aa18.32■□□□□ 0.52
SYNGAP1-201ENST00000293748 URB2Q14146 1524 aaKnown RBP18.29■□□□□ 0.52
SYNGAP1-201ENST00000293748 FBLN2P98095 1184 aa18.29■□□□□ 0.52
SYNGAP1-201ENST00000293748 THOC2Q8NI27 1593 aaKnown RBP18.28■□□□□ 0.52
SYNGAP1-201ENST00000293748 FGD5Q6ZNL6 1462 aa18.22■□□□□ 0.51
SYNGAP1-201ENST00000293748 CHMP7Q8WUX9 453 aaPredicted RBP18.19■□□□□ 0.5
SYNGAP1-201ENST00000293748 POLA1P09884 1462 aaPredicted RBP18.17■□□□□ 0.5
SYNGAP1-201ENST00000293748 TDRD9Q8NDG6 1382 aaKnown RBP18.16■□□□□ 0.5
SYNGAP1-201ENST00000293748 FAM9AQ8IZU1 332 aaPredicted RBP18.15■□□□□ 0.5
SYNGAP1-201ENST00000293748 CENPBP07199 599 aaPredicted RBP18.15■□□□□ 0.5
SYNGAP1-201ENST00000293748 EHMT2Q96KQ7 1210 aa18.15■□□□□ 0.5
SYNGAP1-201ENST00000293748 PCGF6Q9BYE7 350 aa18.15■□□□□ 0.5
SYNGAP1-201ENST00000293748 CUX1P39880 1505 aa18.14■□□□□ 0.5
SYNGAP1-201ENST00000293748 MYT1Q01538 1121 aa18.13■□□□□ 0.49
SYNGAP1-201ENST00000293748 KIF27Q86VH2 1401 aa18.12■□□□□ 0.49
SYNGAP1-201ENST00000293748 RAD54L2Q9Y4B4 1467 aa18.11■□□□□ 0.49
SYNGAP1-201ENST00000293748 APLP2Q06481 763 aa18.1■□□□□ 0.49
SYNGAP1-201ENST00000293748 ZEB1P37275 1124 aaPredicted RBP18.1■□□□□ 0.49
SYNGAP1-201ENST00000293748 OSCARQ8IYS5 282 aa18.1■□□□□ 0.49
SYNGAP1-201ENST00000293748 TOP2BQ02880 1626 aa18.07■□□□□ 0.48
SYNGAP1-201ENST00000293748 AQRO60306 1485 aaKnown RBP eCLIP18.06■□□□□ 0.482e-6■■■■■ 32.4
SYNGAP1-201ENST00000293748 GAPVD1Q14C86 1478 aa18.05■□□□□ 0.48
SYNGAP1-201ENST00000293748 GRIN2BQ13224 1484 aa18.05■□□□□ 0.48
SYNGAP1-201ENST00000293748 CHIC1Q5VXU3 224 aa18.02■□□□□ 0.47
SYNGAP1-201ENST00000293748 ABCA10Q8WWZ4 1543 aa18■□□□□ 0.47
SYNGAP1-201ENST00000293748 SYNJ1O43426 1573 aa18■□□□□ 0.47
SYNGAP1-201ENST00000293748 ZNF608Q9ULD9 1512 aaPredicted RBP17.99■□□□□ 0.47
SYNGAP1-201ENST00000293748 WDR97A6NE52 1622 aa17.97■□□□□ 0.47
SYNGAP1-201ENST00000293748 BIVM-ERCC5R4GMW8 1640 aa17.97■□□□□ 0.47
SYNGAP1-201ENST00000293748 MAGI1Q96QZ7 1491 aaPredicted RBP17.93■□□□□ 0.46
SYNGAP1-201ENST00000293748 EEA1Q15075 1411 aa17.92■□□□□ 0.46
SYNGAP1-201ENST00000293748 ERICH6Q7L0X2 663 aa17.92■□□□□ 0.46
SYNGAP1-201ENST00000293748 CCER1Q8TC90 406 aaPredicted RBP17.92■□□□□ 0.46
SYNGAP1-201ENST00000293748 SNAPC4Q5SXM2 1469 aa17.91■□□□□ 0.46
SYNGAP1-201ENST00000293748 CSRNP3Q8WYN3 585 aa17.9■□□□□ 0.46
SYNGAP1-201ENST00000293748 EIF4G3O43432 1585 aaKnown RBP17.9■□□□□ 0.46
SYNGAP1-201ENST00000293748 FHAD1B1AJZ9 1412 aa17.89■□□□□ 0.45
SYNGAP1-201ENST00000293748 TARBP1Q13395 1621 aaKnown RBP17.88■□□□□ 0.45
SYNGAP1-201ENST00000293748 CARMIL1Q5VZK9 1371 aa17.87■□□□□ 0.45
SYNGAP1-201ENST00000293748 UBTFP17480 764 aaKnown RBP17.86■□□□□ 0.45
SYNGAP1-201ENST00000293748 SYNJ2O15056 1496 aa17.85■□□□□ 0.45
SYNGAP1-201ENST00000293748 ERICH3Q5RHP9 1530 aa17.82■□□□□ 0.44
SYNGAP1-201ENST00000293748 DNAJC5Q9H3Z4 198 aa17.8■□□□□ 0.44
SYNGAP1-201ENST00000293748 IGF1RP08069 1367 aa17.77■□□□□ 0.44
SYNGAP1-201ENST00000293748 ABCA5Q8WWZ7 1642 aa17.73■□□□□ 0.43
SYNGAP1-201ENST00000293748 TTBK1Q5TCY1 1321 aaPredicted RBP17.73■□□□□ 0.43
SYNGAP1-201ENST00000293748 RAPGEF2Q9Y4G8 1499 aa17.73■□□□□ 0.43
SYNGAP1-201ENST00000293748 RANGAP1P46060 587 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms