RNA–Protein interactions for RNA: ENST00000267484.9

RTN1-201, Transcript of reticulon 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene RTN1, Length 3,435 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-201ENST00000267484 CARMIL1Q5VZK9 1371 aa24.29■■□□□ 1.48
RTN1-201ENST00000267484 DDX10Q13206 875 aaKnown RBP24.29■■□□□ 1.48
RTN1-201ENST00000267484 TIAM1Q13009 1591 aa24.27■■□□□ 1.48
RTN1-201ENST00000267484 SETD5Q9C0A6 1442 aa24.25■■□□□ 1.47
RTN1-201ENST00000267484 BCANQ96GW7 911 aa24.23■■□□□ 1.47
RTN1-201ENST00000267484 LRRC9Q6ZRR7 1453 aa24.23■■□□□ 1.47
RTN1-201ENST00000267484 WDR97A6NE52 1622 aa24.2■■□□□ 1.47
RTN1-201ENST00000267484 FGD5Q6ZNL6 1462 aa24.2■■□□□ 1.47
RTN1-201ENST00000267484 TSHZ2Q9NRE2 1034 aa24.16■■□□□ 1.46
RTN1-201ENST00000267484 CADPSQ9ULU8 1353 aa24.14■■□□□ 1.46
RTN1-201ENST00000267484 FHOD3Q2V2M9 1422 aa24.12■■□□□ 1.45
RTN1-201ENST00000267484 PCF11O94913 1555 aaKnown RBP24.1■■□□□ 1.45
RTN1-201ENST00000267484 MAP3K1Q13233 1512 aa24.09■■□□□ 1.45
RTN1-201ENST00000267484 FKBP8Q14318 412 aa24.07■■□□□ 1.44
RTN1-201ENST00000267484 FHAD1B1AJZ9 1412 aa24.06■■□□□ 1.44
RTN1-201ENST00000267484 PPP1R15AO75807 674 aaPredicted RBP24.05■■□□□ 1.44
RTN1-201ENST00000267484 TRIM52Q96A61 297 aa24.04■■□□□ 1.44
RTN1-201ENST00000267484 RAD54L2Q9Y4B4 1467 aa24.04■■□□□ 1.44
RTN1-201ENST00000267484 PRDM2Q13029 1718 aa24.03■■□□□ 1.44
RTN1-201ENST00000267484 CFAP43Q8NDM7 1665 aa23.97■■□□□ 1.43
RTN1-201ENST00000267484 FANCD2Q9BXW9 1451 aa23.94■■□□□ 1.42
RTN1-201ENST00000267484 ANP32CO43423 234 aa23.91■■□□□ 1.42
RTN1-201ENST00000267484 TONSLQ96HA7 1378 aa23.88■■□□□ 1.41
RTN1-201ENST00000267484 CASKIN1Q8WXD9 1431 aa23.87■■□□□ 1.41
RTN1-201ENST00000267484 FYCO1Q9BQS8 1478 aa23.87■■□□□ 1.41
RTN1-201ENST00000267484 TIMELESSQ9UNS1 1208 aa23.87■■□□□ 1.41
RTN1-201ENST00000267484 PTPRKQ15262 1439 aa23.86■■□□□ 1.41
RTN1-201ENST00000267484 POLA1P09884 1462 aaPredicted RBP23.85■■□□□ 1.41
RTN1-201ENST00000267484 FGD6Q6ZV73 1430 aa23.85■■□□□ 1.41
RTN1-201ENST00000267484 NESP48681 1621 aa23.84■■□□□ 1.41
RTN1-201ENST00000267484 MTUS2Q5JR59 1369 aa23.84■■□□□ 1.41
RTN1-201ENST00000267484 CCDC18Q5T9S5 1454 aa23.82■■□□□ 1.4
RTN1-201ENST00000267484 NEFLP07196 543 aa23.81■■□□□ 1.4
RTN1-201ENST00000267484 ABCA10Q8WWZ4 1543 aa23.8■■□□□ 1.4
RTN1-201ENST00000267484 TOPBP1Q92547 1522 aa23.8■■□□□ 1.4
RTN1-201ENST00000267484 CCER2I3L3R5 266 aa23.8■■□□□ 1.4
RTN1-201ENST00000267484 CC2D2AQ9P2K1 1620 aa23.79■■□□□ 1.4
RTN1-201ENST00000267484 EFCAB5A4FU69 1503 aa23.76■■□□□ 1.39
RTN1-201ENST00000267484 DNMBPQ6XZF7 1577 aa23.76■■□□□ 1.39
RTN1-201ENST00000267484 ANP32EQ9BTT0 268 aa23.76■■□□□ 1.39
RTN1-201ENST00000267484 TDRD9Q8NDG6 1382 aaKnown RBP23.76■■□□□ 1.39
RTN1-201ENST00000267484 CHIC2Q9UKJ5 165 aa23.75■■□□□ 1.39
RTN1-201ENST00000267484 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.75■■□□□ 1.39
RTN1-201ENST00000267484 AQRO60306 1485 aaKnown RBP eCLIP23.74■■□□□ 1.39
RTN1-201ENST00000267484 RRP7BPQ9NSQ0 103 aa23.74■■□□□ 1.39
RTN1-201ENST00000267484 FMN1Q68DA7 1419 aa23.74■■□□□ 1.39
RTN1-201ENST00000267484 SNAPC4Q5SXM2 1469 aa23.74■■□□□ 1.39
RTN1-201ENST00000267484 UACAQ9BZF9 1416 aa23.71■■□□□ 1.39
RTN1-201ENST00000267484 HFM1A2PYH4 1435 aa23.71■■□□□ 1.39
RTN1-201ENST00000267484 IRX6P78412 446 aaPredicted RBP23.69■■□□□ 1.38
RTN1-201ENST00000267484 NAIPQ13075 1403 aa23.69■■□□□ 1.38
RTN1-201ENST00000267484 CTTNBP2Q8WZ74 1663 aa23.69■■□□□ 1.38
RTN1-201ENST00000267484 PTPN23Q9H3S7 1636 aa23.69■■□□□ 1.38
RTN1-201ENST00000267484 NCOA2Q15596 1464 aa23.68■■□□□ 1.38
RTN1-201ENST00000267484 ARID3CA6NKF2 412 aa23.68■■□□□ 1.38
RTN1-201ENST00000267484 RBM19Q9Y4C8 960 aaKnown RBP23.67■■□□□ 1.38
RTN1-201ENST00000267484 HNRNPUQ00839 825 aaKnown RBP eCLIP23.66■■□□□ 1.38
RTN1-201ENST00000267484 CUL7Q14999 1698 aa23.64■■□□□ 1.38
RTN1-201ENST00000267484 LRRIQ1Q96JM4 1722 aa23.64■■□□□ 1.38
RTN1-201ENST00000267484 MYOM3Q5VTT5 1437 aa23.64■■□□□ 1.37
RTN1-201ENST00000267484 HSPA5P11021 654 aaKnown RBP23.61■■□□□ 1.37
RTN1-201ENST00000267484 FOXD1Q16676 465 aa23.6■■□□□ 1.37
RTN1-201ENST00000267484 URB2Q14146 1524 aaKnown RBP23.59■■□□□ 1.37
RTN1-201ENST00000267484 WASHC2AQ641Q2 1341 aa23.59■■□□□ 1.37
RTN1-201ENST00000267484 KDM5BQ9UGL1 1544 aa23.58■■□□□ 1.37
RTN1-201ENST00000267484 GRIN2BQ13224 1484 aa23.57■■□□□ 1.36
RTN1-201ENST00000267484 CCDC184Q52MB2 194 aa23.56■■□□□ 1.36
RTN1-201ENST00000267484 MAGI3Q5TCQ9 1506 aa23.54■■□□□ 1.36
RTN1-201ENST00000267484 GAPVD1Q14C86 1478 aa23.53■■□□□ 1.36
RTN1-201ENST00000267484 DNAJC5BQ9UF47 199 aa23.53■■□□□ 1.36
RTN1-201ENST00000267484 SAMD9Q5K651 1589 aa23.53■■□□□ 1.36
RTN1-201ENST00000267484 SUPT6HQ7KZ85 1726 aaKnown RBP23.51■■□□□ 1.35
RTN1-201ENST00000267484 DENND4BO75064 1496 aaPredicted RBP23.5■■□□□ 1.35
RTN1-201ENST00000267484 C11orf95C9JLR9 678 aaPredicted RBP23.49■■□□□ 1.35
RTN1-201ENST00000267484 KDM6BO15054 1643 aa23.48■■□□□ 1.35
RTN1-201ENST00000267484 L3MBTL2Q969R5 705 aa23.47■■□□□ 1.35
RTN1-201ENST00000267484 EHBP1L1Q8N3D4 1523 aa23.47■■□□□ 1.35
RTN1-201ENST00000267484 UGGT2Q9NYU1 1516 aa23.46■■□□□ 1.35
RTN1-201ENST00000267484 EIF4G2P78344 907 aaKnown RBP eCLIP23.46■■□□□ 1.35
RTN1-201ENST00000267484 MPHOSPH9Q99550 1183 aa23.46■■□□□ 1.35
RTN1-201ENST00000267484 ABCA5Q8WWZ7 1642 aa23.45■■□□□ 1.34
RTN1-201ENST00000267484 FAM9BQ8IZU0 186 aa23.44■■□□□ 1.34
RTN1-201ENST00000267484 CNGB1Q14028 1251 aaPredicted RBP23.42■■□□□ 1.34
RTN1-201ENST00000267484 MSH5O43196 834 aa23.42■■□□□ 1.34
RTN1-201ENST00000267484 CDK13Q14004 1512 aaKnown RBP23.4■■□□□ 1.34
RTN1-201ENST00000267484 ARHGEF11O15085 1522 aa23.38■■□□□ 1.33
RTN1-201ENST00000267484 LAMC3Q9Y6N6 1575 aa23.37■■□□□ 1.33
RTN1-201ENST00000267484 NBPF8Q3BBV2 869 aa23.37■■□□□ 1.33
RTN1-201ENST00000267484 THOC2Q8NI27 1593 aaKnown RBP23.35■■□□□ 1.33
RTN1-201ENST00000267484 MRS2Q9HD23 443 aa23.34■■□□□ 1.33
RTN1-201ENST00000267484 CNTLNQ9NXG0 1405 aa23.34■■□□□ 1.33
RTN1-201ENST00000267484 ZNF644Q9H582 1327 aaPredicted RBP23.34■■□□□ 1.33
RTN1-201ENST00000267484 PRKRIP1Q9H875 184 aaPredicted RBP23.33■■□□□ 1.33
RTN1-201ENST00000267484 EPRSP07814 1512 aaKnown RBP23.33■■□□□ 1.33
RTN1-201ENST00000267484 TCOF1Q13428 1488 aaKnown RBP23.33■■□□□ 1.33
RTN1-201ENST00000267484 CDK11AQ9UQ88 783 aaPredicted RBP23.33■■□□□ 1.32
RTN1-201ENST00000267484 HECW1Q76N89 1606 aa23.31■■□□□ 1.32
RTN1-201ENST00000267484 CCDC7Q96M83 1385 aa23.31■■□□□ 1.32
RTN1-201ENST00000267484 GCC2Q8IWJ2 1684 aa23.3■■□□□ 1.32
RTN1-201ENST00000267484 SENP3-EIF4A1A0A087X0R7 540 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms