RNA–Protein interactions for RNA: ENST00000267484.9

RTN1-201, Transcript of reticulon 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene RTN1, Length 3,435 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-201ENST00000267484 NISCHQ9Y2I1 1504 aa33.98■■■■□ 3.03
RTN1-201ENST00000267484 SHROOM4Q9ULL8 1493 aa29.72■■■□□ 2.35
RTN1-201ENST00000267484 SUPT5HO00267 1087 aaKnown RBP29.28■■■□□ 2.28
RTN1-201ENST00000267484 ZCCHC6Q5VYS8 1495 aaKnown RBP28.77■■■□□ 2.2
RTN1-201ENST00000267484 DCAF8L2P0C7V8 631 aa28.65■■■□□ 2.18
RTN1-201ENST00000267484 CCDC180Q9P1Z9 1646 aa28.49■■■□□ 2.15
RTN1-201ENST00000267484 MYO15BQ96JP2 1530 aa28.46■■■□□ 2.15
RTN1-201ENST00000267484 CHIC1Q5VXU3 224 aa28.43■■■□□ 2.14
RTN1-201ENST00000267484 HRCP23327 699 aa28.08■■■□□ 2.09
RTN1-201ENST00000267484 PCGF6Q9BYE7 350 aa28.05■■■□□ 2.08
RTN1-201ENST00000267484 LOC105371045A0A1W2PR82 267 aa27.81■■■□□ 2.04
RTN1-201ENST00000267484 PPARGC1BQ86YN6 1023 aaKnown RBP27.75■■■□□ 2.03
RTN1-201ENST00000267484 DCAF1Q9Y4B6 1507 aa27.63■■■□□ 2.01
RTN1-201ENST00000267484 TRIM26Q12899 539 aaPredicted RBP27.2■■□□□ 1.95
RTN1-201ENST00000267484 ABCC9O60706 1549 aa27.2■■□□□ 1.94
RTN1-201ENST00000267484 SCRIBQ14160 1630 aa27.16■■□□□ 1.94
RTN1-201ENST00000267484 FAM9AQ8IZU1 332 aaPredicted RBP27.13■■□□□ 1.93
RTN1-201ENST00000267484 RSF1Q96T23 1441 aaPredicted RBP27.13■■□□□ 1.93
RTN1-201ENST00000267484 EHMT2Q96KQ7 1210 aa27.09■■□□□ 1.93
RTN1-201ENST00000267484 TRIM41Q8WV44 630 aa27.07■■□□□ 1.92
RTN1-201ENST00000267484 RB1CC1Q8TDY2 1594 aa26.94■■□□□ 1.9
RTN1-201ENST00000267484 CECR2Q9BXF3 1484 aa26.7■■□□□ 1.87
RTN1-201ENST00000267484 ZEB1P37275 1124 aaPredicted RBP26.6■■□□□ 1.85
RTN1-201ENST00000267484 MROH2BQ7Z745 1585 aa26.57■■□□□ 1.84
RTN1-201ENST00000267484 WIZO95785 1651 aa26.45■■□□□ 1.82
RTN1-201ENST00000267484 NACADO15069 1562 aa26.36■■□□□ 1.81
RTN1-201ENST00000267484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.3■■□□□ 1.8
RTN1-201ENST00000267484 TTBK1Q5TCY1 1321 aaPredicted RBP26.26■■□□□ 1.79
RTN1-201ENST00000267484 SCAF1Q9H7N4 1312 aaKnown RBP26.2■■□□□ 1.79
RTN1-201ENST00000267484 CCER1Q8TC90 406 aaPredicted RBP26.15■■□□□ 1.78
RTN1-201ENST00000267484 BAZ1AQ9NRL2 1556 aaPredicted RBP26.12■■□□□ 1.77
RTN1-201ENST00000267484 ABCC8Q09428 1581 aa26.07■■□□□ 1.76
RTN1-201ENST00000267484 EIF4G1Q04637 1599 aaKnown RBP26.05■■□□□ 1.76
RTN1-201ENST00000267484 CCDC88BA6NC98 1476 aa26.02■■□□□ 1.76
RTN1-201ENST00000267484 SOGA1O94964 1423 aa25.91■■□□□ 1.74
RTN1-201ENST00000267484 TOP2AP11388 1531 aaKnown RBP25.86■■□□□ 1.73
RTN1-201ENST00000267484 CEP162Q5TB80 1403 aa25.85■■□□□ 1.73
RTN1-201ENST00000267484 UBTFP17480 764 aaKnown RBP25.81■■□□□ 1.72
RTN1-201ENST00000267484 SMARCA4P51532 1647 aa25.8■■□□□ 1.72
RTN1-201ENST00000267484 SMARCA2P51531 1590 aa25.8■■□□□ 1.72
RTN1-201ENST00000267484 RUSC2Q8N2Y8 1516 aa25.8■■□□□ 1.72
RTN1-201ENST00000267484 NEUROD1Q13562 356 aa25.8■■□□□ 1.72
RTN1-201ENST00000267484 DIEXFQ68CQ4 756 aaKnown RBP25.78■■□□□ 1.72
RTN1-201ENST00000267484 ACIN1Q9UKV3 1341 aaKnown RBP25.74■■□□□ 1.71
RTN1-201ENST00000267484 WRNQ14191 1432 aaPredicted RBP eCLIP25.73■■□□□ 1.71
RTN1-201ENST00000267484 CSRNP3Q8WYN3 585 aa25.73■■□□□ 1.71
RTN1-201ENST00000267484 PABPN1Q86U42 306 aaKnown RBP eCLIP25.69■■□□□ 1.7
RTN1-201ENST00000267484 TNIKQ9UKE5 1360 aa25.69■■□□□ 1.7
RTN1-201ENST00000267484 PELP1Q8IZL8 1130 aaKnown RBP25.67■■□□□ 1.7
RTN1-201ENST00000267484 UNC13AQ9UPW8 1703 aa25.61■■□□□ 1.69
RTN1-201ENST00000267484 GTF3C3Q9Y5Q9 886 aa25.56■■□□□ 1.68
RTN1-201ENST00000267484 HNRNPUL2Q1KMD3 747 aaKnown RBP25.52■■□□□ 1.68
RTN1-201ENST00000267484 RANGAP1P46060 587 aaPredicted RBP25.49■■□□□ 1.67
RTN1-201ENST00000267484 EEA1Q15075 1411 aa25.48■■□□□ 1.67
RTN1-201ENST00000267484 GOLGA3Q08378 1498 aa25.48■■□□□ 1.67
RTN1-201ENST00000267484 CENPBP07199 599 aaPredicted RBP25.47■■□□□ 1.67
RTN1-201ENST00000267484 ZNF316A6NFI3 1004 aaPredicted RBP25.43■■□□□ 1.66
RTN1-201ENST00000267484 YTHDC1Q96MU7 727 aaKnown RBP25.41■■□□□ 1.66
RTN1-201ENST00000267484 SYNJ1O43426 1573 aa25.34■■□□□ 1.65
RTN1-201ENST00000267484 BICRAQ9NZM4 1560 aa25.3■■□□□ 1.64
RTN1-201ENST00000267484 CLIP1P30622 1438 aa25.3■■□□□ 1.64
RTN1-201ENST00000267484 CEP164Q9UPV0 1460 aa25.28■■□□□ 1.64
RTN1-201ENST00000267484 MIER1Q8N108 512 aa25.25■■□□□ 1.63
RTN1-201ENST00000267484 RAPGEF2Q9Y4G8 1499 aa25.21■■□□□ 1.63
RTN1-201ENST00000267484 APLP2Q06481 763 aa25.2■■□□□ 1.63
RTN1-201ENST00000267484 VPS8Q8N3P4 1428 aa25.16■■□□□ 1.62
RTN1-201ENST00000267484 KIF21BO75037 1637 aa25.16■■□□□ 1.62
RTN1-201ENST00000267484 PEG3Q9GZU2 1588 aa25.12■■□□□ 1.61
RTN1-201ENST00000267484 ATAD2BQ9ULI0 1458 aa25.12■■□□□ 1.61
RTN1-201ENST00000267484 BAZ1BQ9UIG0 1483 aaKnown RBP25.09■■□□□ 1.61
RTN1-201ENST00000267484 KANK4Q5T7N3 995 aaPredicted RBP24.94■■□□□ 1.58
RTN1-201ENST00000267484 TOP2BQ02880 1626 aa24.87■■□□□ 1.57
RTN1-201ENST00000267484 DHX57Q6P158 1386 aaKnown RBP24.83■■□□□ 1.57
RTN1-201ENST00000267484 ARAP1Q96P48 1450 aa24.82■■□□□ 1.56
RTN1-201ENST00000267484 ITGAEP38570 1179 aa24.8■■□□□ 1.56
RTN1-201ENST00000267484 PRXQ9BXM0 1461 aa24.77■■□□□ 1.56
RTN1-201ENST00000267484 BIVM-ERCC5R4GMW8 1640 aa24.7■■□□□ 1.55
RTN1-201ENST00000267484 ERICH3Q5RHP9 1530 aa24.68■■□□□ 1.54
RTN1-201ENST00000267484 CUX1P39880 1505 aa24.67■■□□□ 1.54
RTN1-201ENST00000267484 CLSPNQ9HAW4 1339 aa24.63■■□□□ 1.53
RTN1-201ENST00000267484 KIF27Q86VH2 1401 aa24.61■■□□□ 1.53
RTN1-201ENST00000267484 RRBP1Q9P2E9 1410 aaKnown RBP24.58■■□□□ 1.53
RTN1-201ENST00000267484 ARHGAP35Q9NRY4 1499 aa24.56■■□□□ 1.52
RTN1-201ENST00000267484 CCNB3Q8WWL7 1395 aa24.56■■□□□ 1.52
RTN1-201ENST00000267484 KCNH8Q96L42 1107 aa24.5■■□□□ 1.51
RTN1-201ENST00000267484 SUPT16HQ9Y5B9 1047 aaKnown RBP24.48■■□□□ 1.51
RTN1-201ENST00000267484 NCAPD3P42695 1498 aa24.48■■□□□ 1.51
RTN1-201ENST00000267484 RAB3GAP2Q9H2M9 1393 aa24.45■■□□□ 1.5
RTN1-201ENST00000267484 CFTRP13569 1480 aa24.42■■□□□ 1.5
RTN1-201ENST00000267484 HMGXB3Q12766 1538 aa24.41■■□□□ 1.5
RTN1-201ENST00000267484 P3H3Q8IVL6 736 aa24.41■■□□□ 1.5
RTN1-201ENST00000267484 CUX2O14529 1486 aa24.4■■□□□ 1.5
RTN1-201ENST00000267484 ATP1B4Q9UN42 357 aaPredicted RBP24.39■■□□□ 1.5
RTN1-201ENST00000267484 IGF1RP08069 1367 aa24.38■■□□□ 1.49
RTN1-201ENST00000267484 FAM50AQ14320 339 aaKnown RBP24.37■■□□□ 1.49
RTN1-201ENST00000267484 SIN3AQ96ST3 1273 aa24.37■■□□□ 1.49
RTN1-201ENST00000267484 MAPKBP1O60336 1514 aa24.33■■□□□ 1.49
RTN1-201ENST00000267484 MYT1Q01538 1121 aa24.32■■□□□ 1.48
RTN1-201ENST00000267484 PHLDB1Q86UU1 1377 aa24.3■■□□□ 1.48
RTN1-201ENST00000267484 HIRIP3Q9BW71 556 aaPredicted RBP24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms