RNA–Protein interactions for RNA: ENST00000257262.12

TMEM258-201, Transcript of transmembrane protein 258, humanhuman

TSL 3

Gene TMEM258, Length 468 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-201ENST00000257262 RIMBP3CA6NJZ7 1639 aa14.5□□□□□ -0.09
TMEM258-201ENST00000257262 RIMBP3BA6NNM3 1639 aa14.5□□□□□ -0.09
TMEM258-201ENST00000257262 RIMBP3Q9UFD9 1639 aa14.5□□□□□ -0.09
TMEM258-201ENST00000257262 CLASP1Q7Z460 1538 aa14.5□□□□□ -0.09
TMEM258-201ENST00000257262 IGF1RP08069 1367 aa14.49□□□□□ -0.09
TMEM258-201ENST00000257262 CNKSR2Q8WXI2 1034 aa14.49□□□□□ -0.09
TMEM258-201ENST00000257262 ARHGEF11O15085 1522 aa14.47□□□□□ -0.09
TMEM258-201ENST00000257262 RUSC2Q8N2Y8 1516 aa14.46□□□□□ -0.09
TMEM258-201ENST00000257262 CUL7Q14999 1698 aa14.46□□□□□ -0.1
TMEM258-201ENST00000257262 CEP170Q5SW79 1584 aa14.45□□□□□ -0.1
TMEM258-201ENST00000257262 NUP160Q12769 1436 aa14.43□□□□□ -0.1
TMEM258-201ENST00000257262 CARMIL1Q5VZK9 1371 aa14.4□□□□□ -0.1
TMEM258-201ENST00000257262 NCBP3Q53F19 620 aaKnown RBP14.37□□□□□ -0.11
TMEM258-201ENST00000257262 CYB5RLQ6IPT4 315 aa14.36□□□□□ -0.11
TMEM258-201ENST00000257262 SHROOM2Q13796 1616 aa14.35□□□□□ -0.11
TMEM258-201ENST00000257262 ARAP1Q96P48 1450 aa14.35□□□□□ -0.11
TMEM258-201ENST00000257262 ERCC6L2Q5T890 1561 aa14.33□□□□□ -0.12
TMEM258-201ENST00000257262 JPH4Q96JJ6 628 aa14.32□□□□□ -0.12
TMEM258-201ENST00000257262 RAPGEF2Q9Y4G8 1499 aa14.31□□□□□ -0.12
TMEM258-201ENST00000257262 HOXD11P31277 338 aaPredicted RBP14.31□□□□□ -0.12
TMEM258-201ENST00000257262 KIAA0586Q9BVV6 1533 aa14.31□□□□□ -0.12
TMEM258-201ENST00000257262 RNF216Q9NWF9 866 aaPredicted RBP14.29□□□□□ -0.12
TMEM258-201ENST00000257262 PRG4Q92954 1404 aaPredicted RBP14.28□□□□□ -0.12
TMEM258-201ENST00000257262 CSRNP3Q8WYN3 585 aa14.27□□□□□ -0.13
TMEM258-201ENST00000257262 PRXQ9BXM0 1461 aa14.25□□□□□ -0.13
TMEM258-201ENST00000257262 FAM9AQ8IZU1 332 aaPredicted RBP14.25□□□□□ -0.13
TMEM258-201ENST00000257262 EEA1Q15075 1411 aa14.24□□□□□ -0.13
TMEM258-201ENST00000257262 IQGAP2Q13576 1575 aa14.23□□□□□ -0.13
TMEM258-201ENST00000257262 CTTNBP2Q8WZ74 1663 aa14.22□□□□□ -0.13
TMEM258-201ENST00000257262 TRHP20396 242 aaPredicted RBP14.16□□□□□ -0.14
TMEM258-201ENST00000257262 CARMIL2Q6F5E8 1435 aa14.15□□□□□ -0.14
TMEM258-201ENST00000257262 UGGT2Q9NYU1 1516 aa14.15□□□□□ -0.14
TMEM258-201ENST00000257262 DISP1Q96F81 1524 aa14.14□□□□□ -0.15
TMEM258-201ENST00000257262 TTBK1Q5TCY1 1321 aaPredicted RBP14.13□□□□□ -0.15
TMEM258-201ENST00000257262 KIF21BO75037 1637 aa14.12□□□□□ -0.15
TMEM258-201ENST00000257262 DCAF8L1A6NGE4 600 aa14.12□□□□□ -0.15
TMEM258-201ENST00000257262 TNIKQ9UKE5 1360 aa14.1□□□□□ -0.15
TMEM258-201ENST00000257262 PTPRGP23470 1445 aa14.1□□□□□ -0.15
TMEM258-201ENST00000257262 KIAA0556O60303 1618 aa14.1□□□□□ -0.15
TMEM258-201ENST00000257262 EHMT2Q96KQ7 1210 aa14.09□□□□□ -0.15
TMEM258-201ENST00000257262 NPM3O75607 178 aaKnown RBP14.08□□□□□ -0.16
TMEM258-201ENST00000257262 ADCY10Q96PN6 1610 aa14.08□□□□□ -0.16
TMEM258-201ENST00000257262 GOLGA3Q08378 1498 aa14.06□□□□□ -0.16
TMEM258-201ENST00000257262 NPM1P06748 294 aaKnown RBP eCLIP14.04□□□□□ -0.16
TMEM258-201ENST00000257262 RANGAP1P46060 587 aaPredicted RBP14.03□□□□□ -0.16
TMEM258-201ENST00000257262 P3H3Q8IVL6 736 aa14.03□□□□□ -0.16
TMEM258-201ENST00000257262 UBTFP17480 764 aaKnown RBP14.02□□□□□ -0.17
TMEM258-201ENST00000257262 SAMD9Q5K651 1589 aa14.01□□□□□ -0.17
TMEM258-201ENST00000257262 UACAQ9BZF9 1416 aa14.01□□□□□ -0.17
TMEM258-201ENST00000257262 KCNA4P22459 653 aa14.01□□□□□ -0.17
TMEM258-201ENST00000257262 UHRF1BP1LA0JNW5 1464 aa13.99□□□□□ -0.17
TMEM258-201ENST00000257262 ABCC2Q92887 1545 aa13.98□□□□□ -0.17
TMEM258-201ENST00000257262 PLB1Q6P1J6 1458 aa13.97□□□□□ -0.17
TMEM258-201ENST00000257262 MAPKBP1O60336 1514 aa13.96□□□□□ -0.17
TMEM258-201ENST00000257262 KIF13AQ9H1H9 1805 aa13.95□□□□□ -0.18
TMEM258-201ENST00000257262 ABCA8O94911 1581 aa13.95□□□□□ -0.18
TMEM258-201ENST00000257262 ZCCHC11Q5TAX3 1644 aaKnown RBP13.93□□□□□ -0.18
TMEM258-201ENST00000257262 KDM5BQ9UGL1 1544 aa13.93□□□□□ -0.18
TMEM258-201ENST00000257262 EFCAB5A4FU69 1503 aa13.92□□□□□ -0.18
TMEM258-201ENST00000257262 FHOD3Q2V2M9 1422 aa13.91□□□□□ -0.18
TMEM258-201ENST00000257262 ABCC10Q5T3U5 1492 aa13.91□□□□□ -0.18
TMEM258-201ENST00000257262 FAM69CQ0P6D2 419 aa13.9□□□□□ -0.18
TMEM258-201ENST00000257262 DIP2BQ9P265 1576 aa13.9□□□□□ -0.18
TMEM258-201ENST00000257262 ASXL2Q76L83 1435 aa13.9□□□□□ -0.19
TMEM258-201ENST00000257262 RAPGEF6Q8TEU7 1601 aa13.88□□□□□ -0.19
TMEM258-201ENST00000257262 ARHGAP35Q9NRY4 1499 aa13.87□□□□□ -0.19
TMEM258-201ENST00000257262 ARID3CA6NKF2 412 aa13.86□□□□□ -0.19
TMEM258-201ENST00000257262 ATP10BO94823 1461 aa13.84□□□□□ -0.19
TMEM258-201ENST00000257262 TSPOAP1O95153 1857 aa13.82□□□□□ -0.2
TMEM258-201ENST00000257262 NUP153P49790 1475 aaKnown RBP13.81□□□□□ -0.2
TMEM258-201ENST00000257262 EPRSP07814 1512 aaKnown RBP13.81□□□□□ -0.2
TMEM258-201ENST00000257262 GLI2P10070 1586 aa13.81□□□□□ -0.2
TMEM258-201ENST00000257262 WDR7Q9Y4E6 1490 aa13.8□□□□□ -0.2
TMEM258-201ENST00000257262 LOC105371045A0A1W2PR82 267 aa13.8□□□□□ -0.2
TMEM258-201ENST00000257262 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.8□□□□□ -0.2
TMEM258-201ENST00000257262 HNRNPUL2Q1KMD3 747 aaKnown RBP13.8□□□□□ -0.2
TMEM258-201ENST00000257262 KCNH8Q96L42 1107 aa13.8□□□□□ -0.2
TMEM258-201ENST00000257262 FMN1Q68DA7 1419 aa13.8□□□□□ -0.2
TMEM258-201ENST00000257262 CLIP1P30622 1438 aa13.78□□□□□ -0.2
TMEM258-201ENST00000257262 ATP1B4Q9UN42 357 aaPredicted RBP13.77□□□□□ -0.21
TMEM258-201ENST00000257262 MAP3K4Q9Y6R4 1608 aa13.77□□□□□ -0.21
TMEM258-201ENST00000257262 PPRC1Q5VV67 1664 aaKnown RBP13.75□□□□□ -0.21
TMEM258-201ENST00000257262 HECW1Q76N89 1606 aa13.75□□□□□ -0.21
TMEM258-201ENST00000257262 LRRIQ1Q96JM4 1722 aa13.73□□□□□ -0.21
TMEM258-201ENST00000257262 CFAP43Q8NDM7 1665 aa13.73□□□□□ -0.21
TMEM258-201ENST00000257262 PLEKHD1A6NEE1 506 aa13.73□□□□□ -0.21
TMEM258-201ENST00000257262 CDK13Q14004 1512 aaKnown RBP13.73□□□□□ -0.21
TMEM258-201ENST00000257262 RNF39Q9H2S5 420 aa13.72□□□□□ -0.21
TMEM258-201ENST00000257262 CEP162Q5TB80 1403 aa13.72□□□□□ -0.21
TMEM258-201ENST00000257262 PCF11O94913 1555 aaKnown RBP13.71□□□□□ -0.22
TMEM258-201ENST00000257262 CD109Q6YHK3 1445 aa13.7□□□□□ -0.22
TMEM258-201ENST00000257262 CASKIN1Q8WXD9 1431 aa13.69□□□□□ -0.22
TMEM258-201ENST00000257262 KDM6BO15054 1643 aa13.68□□□□□ -0.22
TMEM258-201ENST00000257262 ABCA9Q8IUA7 1624 aa13.68□□□□□ -0.22
TMEM258-201ENST00000257262 TEX14Q8IWB6 1497 aa13.67□□□□□ -0.22
TMEM258-201ENST00000257262 MAGI3Q5TCQ9 1506 aa13.66□□□□□ -0.22
TMEM258-201ENST00000257262 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.65□□□□□ -0.22
TMEM258-201ENST00000257262 CDK11AQ9UQ88 783 aaPredicted RBP13.65□□□□□ -0.22
TMEM258-201ENST00000257262 FYCO1Q9BQS8 1478 aa13.65□□□□□ -0.22
TMEM258-201ENST00000257262 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.64□□□□□ -0.231e-9■■■■■ 62
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms