RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 KIF21BO75037 1637 aa16.99■□□□□ 0.31
USHBP1-201ENST00000252597 PRDM2Q13029 1718 aa16.96■□□□□ 0.31
USHBP1-201ENST00000252597 CUX2O14529 1486 aa16.95■□□□□ 0.3
USHBP1-201ENST00000252597 ANP32CO43423 234 aa16.94■□□□□ 0.3
USHBP1-201ENST00000252597 FGD5Q6ZNL6 1462 aa16.94■□□□□ 0.3
USHBP1-201ENST00000252597 SENP3-EIF4A1A0A087X0R7 540 aa16.93■□□□□ 0.3
USHBP1-201ENST00000252597 ANP32EQ9BTT0 268 aa16.93■□□□□ 0.3
USHBP1-201ENST00000252597 CCNB3Q8WWL7 1395 aa16.91■□□□□ 0.3
USHBP1-201ENST00000252597 ARID3CA6NKF2 412 aa16.91■□□□□ 0.3
USHBP1-201ENST00000252597 ERICH6Q7L0X2 663 aa16.91■□□□□ 0.3
USHBP1-201ENST00000252597 RAB3GAP2Q9H2M9 1393 aa16.89■□□□□ 0.29
USHBP1-201ENST00000252597 PRXQ9BXM0 1461 aa16.89■□□□□ 0.29
USHBP1-201ENST00000252597 POLR3GLQ9BT43 218 aa16.88■□□□□ 0.29
USHBP1-201ENST00000252597 RAD54L2Q9Y4B4 1467 aa16.86■□□□□ 0.29
USHBP1-201ENST00000252597 HNRNPUQ00839 825 aaKnown RBP eCLIP16.86■□□□□ 0.29
USHBP1-201ENST00000252597 CLSPNQ9HAW4 1339 aa16.84■□□□□ 0.29
USHBP1-201ENST00000252597 IGF1RP08069 1367 aa16.84■□□□□ 0.29
USHBP1-201ENST00000252597 TOPBP1Q92547 1522 aa16.82■□□□□ 0.28
USHBP1-201ENST00000252597 ARAP1Q96P48 1450 aa16.82■□□□□ 0.28
USHBP1-201ENST00000252597 RBM19Q9Y4C8 960 aaKnown RBP16.81■□□□□ 0.28
USHBP1-201ENST00000252597 ERICH3Q5RHP9 1530 aa16.81■□□□□ 0.28
USHBP1-201ENST00000252597 CHIC2Q9UKJ5 165 aa16.8■□□□□ 0.28
USHBP1-201ENST00000252597 LAMC3Q9Y6N6 1575 aa16.8■□□□□ 0.28
USHBP1-201ENST00000252597 CARMIL1Q5VZK9 1371 aa16.79■□□□□ 0.28
USHBP1-201ENST00000252597 POLA1P09884 1462 aaPredicted RBP16.79■□□□□ 0.28
USHBP1-201ENST00000252597 DNMBPQ6XZF7 1577 aa16.79■□□□□ 0.28
USHBP1-201ENST00000252597 PDS5BQ9NTI5 1447 aa16.78■□□□□ 0.28
USHBP1-201ENST00000252597 URB2Q14146 1524 aaKnown RBP16.76■□□□□ 0.27
USHBP1-201ENST00000252597 FAM9BQ8IZU0 186 aa16.75■□□□□ 0.27
USHBP1-201ENST00000252597 TONSLQ96HA7 1378 aa16.74■□□□□ 0.27
USHBP1-201ENST00000252597 TDRD9Q8NDG6 1382 aaKnown RBP16.73■□□□□ 0.27
USHBP1-201ENST00000252597 BCL11AQ9H165 835 aa16.73■□□□□ 0.27
USHBP1-201ENST00000252597 RRP7BPQ9NSQ0 103 aa16.7■□□□□ 0.26
USHBP1-201ENST00000252597 KIF21AQ7Z4S6 1674 aa16.69■□□□□ 0.26
USHBP1-201ENST00000252597 SETD5Q9C0A6 1442 aa16.69■□□□□ 0.26
USHBP1-201ENST00000252597 CDK11AQ9UQ88 783 aaPredicted RBP16.68■□□□□ 0.26
USHBP1-201ENST00000252597 ABCA10Q8WWZ4 1543 aa16.68■□□□□ 0.26
USHBP1-201ENST00000252597 ZNF326Q5BKZ1 582 aaKnown RBP16.67■□□□□ 0.26
USHBP1-201ENST00000252597 ERCC6Q03468 1493 aa16.66■□□□□ 0.26
USHBP1-201ENST00000252597 PPP1R15AO75807 674 aaPredicted RBP16.66■□□□□ 0.26
USHBP1-201ENST00000252597 PHLDB1Q86UU1 1377 aa16.65■□□□□ 0.26
USHBP1-201ENST00000252597 ARHGAP35Q9NRY4 1499 aa16.64■□□□□ 0.25
USHBP1-201ENST00000252597 FOXD1Q16676 465 aa16.63■□□□□ 0.25
USHBP1-201ENST00000252597 WDR97A6NE52 1622 aa16.61■□□□□ 0.25
USHBP1-201ENST00000252597 RRBP1Q9P2E9 1410 aaKnown RBP16.61■□□□□ 0.25
USHBP1-201ENST00000252597 B4GALNT3Q6L9W6 998 aa16.61■□□□□ 0.25
USHBP1-201ENST00000252597 NBR1Q14596 966 aa16.58■□□□□ 0.24
USHBP1-201ENST00000252597 GAPVD1Q14C86 1478 aa16.58■□□□□ 0.24
USHBP1-201ENST00000252597 FHOD3Q2V2M9 1422 aa16.57■□□□□ 0.24
USHBP1-201ENST00000252597 MRS2Q9HD23 443 aa16.55■□□□□ 0.24
USHBP1-201ENST00000252597 MTUS2Q5JR59 1369 aa16.55■□□□□ 0.24
USHBP1-201ENST00000252597 CCDC184Q52MB2 194 aa16.53■□□□□ 0.24
USHBP1-201ENST00000252597 SALL2Q9Y467 1007 aaPredicted RBP16.53■□□□□ 0.24
USHBP1-201ENST00000252597 AQRO60306 1485 aaKnown RBP eCLIP16.53■□□□□ 0.24
USHBP1-201ENST00000252597 MRC2Q9UBG0 1479 aa16.52■□□□□ 0.24
USHBP1-201ENST00000252597 MSH5O43196 834 aa16.52■□□□□ 0.24
USHBP1-201ENST00000252597 HSPA5P11021 654 aaKnown RBP16.52■□□□□ 0.23
USHBP1-201ENST00000252597 CCER2I3L3R5 266 aa16.51■□□□□ 0.23
USHBP1-201ENST00000252597 FBLN2P98095 1184 aa16.5■□□□□ 0.23
USHBP1-201ENST00000252597 MAPKBP1O60336 1514 aa16.49■□□□□ 0.23
USHBP1-201ENST00000252597 CUL7Q14999 1698 aa16.48■□□□□ 0.23
USHBP1-201ENST00000252597 ABCA5Q8WWZ7 1642 aa16.48■□□□□ 0.23
USHBP1-201ENST00000252597 TARBP1Q13395 1621 aaKnown RBP16.45■□□□□ 0.22
USHBP1-201ENST00000252597 EIF4G2P78344 907 aaKnown RBP eCLIP16.45■□□□□ 0.22
USHBP1-201ENST00000252597 NPM2Q86SE8 214 aaKnown RBP16.44■□□□□ 0.22
USHBP1-201ENST00000252597 LRRC9Q6ZRR7 1453 aa16.44■□□□□ 0.22
USHBP1-201ENST00000252597 ZNF608Q9ULD9 1512 aaPredicted RBP16.43■□□□□ 0.22
USHBP1-201ENST00000252597 FHAD1B1AJZ9 1412 aa16.4■□□□□ 0.22
USHBP1-201ENST00000252597 ZNF777Q9ULD5 760 aaPredicted RBP16.4■□□□□ 0.22
USHBP1-201ENST00000252597 WASHC2AQ641Q2 1341 aa16.39■□□□□ 0.21
USHBP1-201ENST00000252597 CTTNBP2Q8WZ74 1663 aa16.38■□□□□ 0.21
USHBP1-201ENST00000252597 L3MBTL2Q969R5 705 aa16.38■□□□□ 0.21
USHBP1-201ENST00000252597 PCF11O94913 1555 aaKnown RBP16.37■□□□□ 0.21
USHBP1-201ENST00000252597 TIMELESSQ9UNS1 1208 aa16.36■□□□□ 0.21
USHBP1-201ENST00000252597 PPP4R2Q9NY27 417 aa16.35■□□□□ 0.21
USHBP1-201ENST00000252597 IFT140Q96RY7 1462 aa16.35■□□□□ 0.21
USHBP1-201ENST00000252597 CCDC136Q96JN2 1154 aa16.35■□□□□ 0.21
USHBP1-201ENST00000252597 TIAM1Q13009 1591 aa16.35■□□□□ 0.21
USHBP1-201ENST00000252597 GRIN2BQ13224 1484 aa16.34■□□□□ 0.21
USHBP1-201ENST00000252597 WDR62O43379 1518 aa16.34■□□□□ 0.21
USHBP1-201ENST00000252597 PBRM1Q86U86 1689 aa16.34■□□□□ 0.21
USHBP1-201ENST00000252597 C11orf95C9JLR9 678 aaPredicted RBP16.34■□□□□ 0.21
USHBP1-201ENST00000252597 CCDC18Q5T9S5 1454 aa16.32■□□□□ 0.2
USHBP1-201ENST00000252597 SLC4A1APQ9BWU0 796 aaKnown RBP16.32■□□□□ 0.2
USHBP1-201ENST00000252597 EFCAB5A4FU69 1503 aa16.32■□□□□ 0.2
USHBP1-201ENST00000252597 KDM2AQ9Y2K7 1162 aa16.32■□□□□ 0.2
USHBP1-201ENST00000252597 FMN1Q68DA7 1419 aa16.3■□□□□ 0.2
USHBP1-201ENST00000252597 MPHOSPH9Q99550 1183 aa16.29■□□□□ 0.2
USHBP1-201ENST00000252597 DEKP35659 375 aaKnown RBP16.29■□□□□ 0.2
USHBP1-201ENST00000252597 CHMP7Q8WUX9 453 aaPredicted RBP16.29■□□□□ 0.2
USHBP1-201ENST00000252597 SNAPC4Q5SXM2 1469 aa16.28■□□□□ 0.2
USHBP1-201ENST00000252597 CASKIN1Q8WXD9 1431 aa16.28■□□□□ 0.2
USHBP1-201ENST00000252597 PRKRIP1Q9H875 184 aaPredicted RBP16.28■□□□□ 0.2
USHBP1-201ENST00000252597 ADAMTS12P58397 1594 aa16.27■□□□□ 0.2
USHBP1-201ENST00000252597 FYCO1Q9BQS8 1478 aa16.27■□□□□ 0.19
USHBP1-201ENST00000252597 RTL5Q5HYW3 569 aaPredicted RBP16.26■□□□□ 0.19
USHBP1-201ENST00000252597 PTPRKQ15262 1439 aa16.26■□□□□ 0.19
USHBP1-201ENST00000252597 FGD6Q6ZV73 1430 aa16.26■□□□□ 0.19
USHBP1-201ENST00000252597 PAK3O75914 559 aaPredicted RBP16.25■□□□□ 0.19
USHBP1-201ENST00000252597 TMC1Q8TDI8 760 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms