RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 NISCHQ9Y2I1 1504 aa23.64■■□□□ 1.38
USHBP1-201ENST00000252597 SHROOM4Q9ULL8 1493 aa20.9■□□□□ 0.94
USHBP1-201ENST00000252597 SUPT5HO00267 1087 aaKnown RBP20.76■□□□□ 0.91
USHBP1-201ENST00000252597 DCAF8L2P0C7V8 631 aa20.46■□□□□ 0.87
USHBP1-201ENST00000252597 CCDC180Q9P1Z9 1646 aa20.23■□□□□ 0.83
USHBP1-201ENST00000252597 PCGF6Q9BYE7 350 aa20.02■□□□□ 0.79
USHBP1-201ENST00000252597 ZCCHC6Q5VYS8 1495 aaKnown RBP19.88■□□□□ 0.77
USHBP1-201ENST00000252597 PPARGC1BQ86YN6 1023 aaKnown RBP19.82■□□□□ 0.76
USHBP1-201ENST00000252597 HRCP23327 699 aa19.73■□□□□ 0.75
USHBP1-201ENST00000252597 CHIC1Q5VXU3 224 aa19.71■□□□□ 0.75
USHBP1-201ENST00000252597 EHMT2Q96KQ7 1210 aa19.67■□□□□ 0.74
USHBP1-201ENST00000252597 LOC105371045A0A1W2PR82 267 aa19.62■□□□□ 0.73
USHBP1-201ENST00000252597 MYO15BQ96JP2 1530 aa19.53■□□□□ 0.72
USHBP1-201ENST00000252597 ABCC9O60706 1549 aa19.4■□□□□ 0.7
USHBP1-201ENST00000252597 FAM9AQ8IZU1 332 aaPredicted RBP19.39■□□□□ 0.69
USHBP1-201ENST00000252597 DCAF1Q9Y4B6 1507 aa19.31■□□□□ 0.68
USHBP1-201ENST00000252597 TRIM26Q12899 539 aaPredicted RBP19.05■□□□□ 0.64
USHBP1-201ENST00000252597 SCRIBQ14160 1630 aa19.04■□□□□ 0.64
USHBP1-201ENST00000252597 TTBK1Q5TCY1 1321 aaPredicted RBP19.03■□□□□ 0.64
USHBP1-201ENST00000252597 TRIM41Q8WV44 630 aa18.99■□□□□ 0.63
USHBP1-201ENST00000252597 NACADO15069 1562 aa18.87■□□□□ 0.61
USHBP1-201ENST00000252597 RB1CC1Q8TDY2 1594 aa18.7■□□□□ 0.58
USHBP1-201ENST00000252597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.69■□□□□ 0.58
USHBP1-201ENST00000252597 CCER1Q8TC90 406 aaPredicted RBP18.65■□□□□ 0.58
USHBP1-201ENST00000252597 ZEB1P37275 1124 aaPredicted RBP18.65■□□□□ 0.58
USHBP1-201ENST00000252597 SCAF1Q9H7N4 1312 aaKnown RBP18.59■□□□□ 0.57
USHBP1-201ENST00000252597 RSF1Q96T23 1441 aaPredicted RBP18.56■□□□□ 0.56
USHBP1-201ENST00000252597 PABPN1Q86U42 306 aaKnown RBP eCLIP18.55■□□□□ 0.56
USHBP1-201ENST00000252597 CECR2Q9BXF3 1484 aa18.53■□□□□ 0.56
USHBP1-201ENST00000252597 YTHDC1Q96MU7 727 aaKnown RBP18.45■□□□□ 0.54
USHBP1-201ENST00000252597 MROH2BQ7Z745 1585 aa18.39■□□□□ 0.53
USHBP1-201ENST00000252597 RANGAP1P46060 587 aaPredicted RBP18.38■□□□□ 0.53
USHBP1-201ENST00000252597 UNC13AQ9UPW8 1703 aa18.34■□□□□ 0.53
USHBP1-201ENST00000252597 NEUROD1Q13562 356 aa18.32■□□□□ 0.52
USHBP1-201ENST00000252597 PELP1Q8IZL8 1130 aaKnown RBP18.3■□□□□ 0.52
USHBP1-201ENST00000252597 GTF3C3Q9Y5Q9 886 aa18.29■□□□□ 0.52
USHBP1-201ENST00000252597 DIEXFQ68CQ4 756 aaKnown RBP18.29■□□□□ 0.52
USHBP1-201ENST00000252597 WIZO95785 1651 aa18.27■□□□□ 0.51
USHBP1-201ENST00000252597 UBTFP17480 764 aaKnown RBP18.25■□□□□ 0.51
USHBP1-201ENST00000252597 ACIN1Q9UKV3 1341 aaKnown RBP18.21■□□□□ 0.51
USHBP1-201ENST00000252597 CENPBP07199 599 aaPredicted RBP18.2■□□□□ 0.5
USHBP1-201ENST00000252597 BAZ1AQ9NRL2 1556 aaPredicted RBP18.2■□□□□ 0.5
USHBP1-201ENST00000252597 HNRNPUL2Q1KMD3 747 aaKnown RBP18.16■□□□□ 0.5
USHBP1-201ENST00000252597 BICRAQ9NZM4 1560 aa18.16■□□□□ 0.5
USHBP1-201ENST00000252597 SMARCA4P51532 1647 aa18.09■□□□□ 0.49
USHBP1-201ENST00000252597 TOP2AP11388 1531 aaKnown RBP17.93■□□□□ 0.46
USHBP1-201ENST00000252597 APLP2Q06481 763 aa17.91■□□□□ 0.46
USHBP1-201ENST00000252597 CCDC88BA6NC98 1476 aa17.9■□□□□ 0.46
USHBP1-201ENST00000252597 ZNF316A6NFI3 1004 aaPredicted RBP17.88■□□□□ 0.45
USHBP1-201ENST00000252597 MIER1Q8N108 512 aa17.85■□□□□ 0.45
USHBP1-201ENST00000252597 SMARCA2P51531 1590 aa17.82■□□□□ 0.44
USHBP1-201ENST00000252597 CSRNP3Q8WYN3 585 aa17.79■□□□□ 0.44
USHBP1-201ENST00000252597 ITGAEP38570 1179 aa17.78■□□□□ 0.44
USHBP1-201ENST00000252597 ATAD2BQ9ULI0 1458 aa17.77■□□□□ 0.44
USHBP1-201ENST00000252597 SOGA1O94964 1423 aa17.74■□□□□ 0.43
USHBP1-201ENST00000252597 BAZ1BQ9UIG0 1483 aaKnown RBP17.74■□□□□ 0.43
USHBP1-201ENST00000252597 CEP162Q5TB80 1403 aa17.73■□□□□ 0.43
USHBP1-201ENST00000252597 ABCC8Q09428 1581 aa17.73■□□□□ 0.43
USHBP1-201ENST00000252597 EIF4G1Q04637 1599 aaKnown RBP17.69■□□□□ 0.42
USHBP1-201ENST00000252597 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
USHBP1-201ENST00000252597 RUSC2Q8N2Y8 1516 aa17.62■□□□□ 0.41
USHBP1-201ENST00000252597 BCANQ96GW7 911 aa17.57■□□□□ 0.4
USHBP1-201ENST00000252597 ATP1B4Q9UN42 357 aaPredicted RBP17.52■□□□□ 0.4
USHBP1-201ENST00000252597 WRNQ14191 1432 aaPredicted RBP eCLIP17.48■□□□□ 0.39
USHBP1-201ENST00000252597 TNIKQ9UKE5 1360 aa17.48■□□□□ 0.39
USHBP1-201ENST00000252597 NCAPD3P42695 1498 aa17.48■□□□□ 0.39
USHBP1-201ENST00000252597 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
USHBP1-201ENST00000252597 CLIP1P30622 1438 aa17.4■□□□□ 0.38
USHBP1-201ENST00000252597 HIRIP3Q9BW71 556 aaPredicted RBP17.38■□□□□ 0.37
USHBP1-201ENST00000252597 SYNJ1O43426 1573 aa17.37■□□□□ 0.37
USHBP1-201ENST00000252597 MYT1Q01538 1121 aa17.37■□□□□ 0.37
USHBP1-201ENST00000252597 GOLGA3Q08378 1498 aa17.34■□□□□ 0.37
USHBP1-201ENST00000252597 KCNH8Q96L42 1107 aa17.33■□□□□ 0.37
USHBP1-201ENST00000252597 CC2D2AQ9P2K1 1620 aa17.33■□□□□ 0.36
USHBP1-201ENST00000252597 DNAJC5BQ9UF47 199 aa17.32■□□□□ 0.36
USHBP1-201ENST00000252597 KANK4Q5T7N3 995 aaPredicted RBP17.3■□□□□ 0.36
USHBP1-201ENST00000252597 SUPT16HQ9Y5B9 1047 aaKnown RBP17.29■□□□□ 0.36
USHBP1-201ENST00000252597 P3H3Q8IVL6 736 aa17.26■□□□□ 0.35
USHBP1-201ENST00000252597 DDX10Q13206 875 aaKnown RBP17.26■□□□□ 0.35
USHBP1-201ENST00000252597 FAM50AQ14320 339 aaKnown RBP17.25■□□□□ 0.35
USHBP1-201ENST00000252597 EEA1Q15075 1411 aa17.23■□□□□ 0.35
USHBP1-201ENST00000252597 CFTRP13569 1480 aa17.22■□□□□ 0.35
USHBP1-201ENST00000252597 FKBP8Q14318 412 aa17.21■□□□□ 0.34
USHBP1-201ENST00000252597 TRIM52Q96A61 297 aa17.2■□□□□ 0.34
USHBP1-201ENST00000252597 RAPGEF2Q9Y4G8 1499 aa17.17■□□□□ 0.34
USHBP1-201ENST00000252597 CADPSQ9ULU8 1353 aa17.17■□□□□ 0.34
USHBP1-201ENST00000252597 CNGB1Q14028 1251 aaPredicted RBP17.17■□□□□ 0.34
USHBP1-201ENST00000252597 TOP2BQ02880 1626 aa17.16■□□□□ 0.34
USHBP1-201ENST00000252597 CEP164Q9UPV0 1460 aa17.15■□□□□ 0.34
USHBP1-201ENST00000252597 SIN3AQ96ST3 1273 aa17.15■□□□□ 0.34
USHBP1-201ENST00000252597 CUX1P39880 1505 aa17.14■□□□□ 0.33
USHBP1-201ENST00000252597 VPS8Q8N3P4 1428 aa17.14■□□□□ 0.33
USHBP1-201ENST00000252597 NEFLP07196 543 aa17.13■□□□□ 0.33
USHBP1-201ENST00000252597 TSHZ2Q9NRE2 1034 aa17.09■□□□□ 0.33
USHBP1-201ENST00000252597 DHX57Q6P158 1386 aaKnown RBP17.08■□□□□ 0.33
USHBP1-201ENST00000252597 BIVM-ERCC5R4GMW8 1640 aa17.07■□□□□ 0.32
USHBP1-201ENST00000252597 IRX6P78412 446 aaPredicted RBP17.07■□□□□ 0.32
USHBP1-201ENST00000252597 NESP48681 1621 aa17.07■□□□□ 0.32
USHBP1-201ENST00000252597 FANCD2Q9BXW9 1451 aa17.01■□□□□ 0.31
USHBP1-201ENST00000252597 KIF27Q86VH2 1401 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms