RNA–Protein interactions for RNA: ENST00000249806.10

CLN6-201, Transcript of CLN6, transmembrane ER protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN6, Length 2,243 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-201ENST00000249806 FHAD1B1AJZ9 1412 aa32.44■■■□□ 2.78
CLN6-201ENST00000249806 FHOD3Q2V2M9 1422 aa32.44■■■□□ 2.78
CLN6-201ENST00000249806 MAP3K1Q13233 1512 aa32.42■■■□□ 2.78
CLN6-201ENST00000249806 TARBP1Q13395 1621 aaKnown RBP32.42■■■□□ 2.78
CLN6-201ENST00000249806 ATP1B4Q9UN42 357 aaPredicted RBP32.38■■■□□ 2.77
CLN6-201ENST00000249806 PCF11O94913 1555 aaKnown RBP32.38■■■□□ 2.77
CLN6-201ENST00000249806 CCNB3Q8WWL7 1395 aa32.38■■■□□ 2.77
CLN6-201ENST00000249806 EFCAB5A4FU69 1503 aa32.37■■■□□ 2.77
CLN6-201ENST00000249806 LRRC9Q6ZRR7 1453 aa32.35■■■□□ 2.77
CLN6-201ENST00000249806 MRC2Q9UBG0 1479 aa32.31■■■□□ 2.76
CLN6-201ENST00000249806 ITGAEP38570 1179 aa32.27■■■□□ 2.76
CLN6-201ENST00000249806 CFAP43Q8NDM7 1665 aa32.25■■■□□ 2.75
CLN6-201ENST00000249806 AQRO60306 1485 aaKnown RBP eCLIP32.25■■■□□ 2.752e-7■■■■□ 23.4
CLN6-201ENST00000249806 CASKIN1Q8WXD9 1431 aa32.23■■■□□ 2.75
CLN6-201ENST00000249806 FYCO1Q9BQS8 1478 aa32.23■■■□□ 2.75
CLN6-201ENST00000249806 PHLDB1Q86UU1 1377 aa32.22■■■□□ 2.75
CLN6-201ENST00000249806 DHX57Q6P158 1386 aaKnown RBP32.2■■■□□ 2.75
CLN6-201ENST00000249806 PBRM1Q86U86 1689 aa32.19■■■□□ 2.74
CLN6-201ENST00000249806 FMN1Q68DA7 1419 aa32.18■■■□□ 2.74
CLN6-201ENST00000249806 SAMD9Q5K651 1589 aa32.16■■■□□ 2.74
CLN6-201ENST00000249806 DIEXFQ68CQ4 756 aaKnown RBP32.15■■■□□ 2.74
CLN6-201ENST00000249806 ZNF316A6NFI3 1004 aaPredicted RBP32.11■■■□□ 2.73
CLN6-201ENST00000249806 SNAPC4Q5SXM2 1469 aa32.11■■■□□ 2.73
CLN6-201ENST00000249806 ZNF608Q9ULD9 1512 aaPredicted RBP32.07■■■□□ 2.72
CLN6-201ENST00000249806 CLSPNQ9HAW4 1339 aa32.07■■■□□ 2.72
CLN6-201ENST00000249806 FAM50AQ14320 339 aaKnown RBP32.07■■■□□ 2.72
CLN6-201ENST00000249806 WDR62O43379 1518 aa32.07■■■□□ 2.72
CLN6-201ENST00000249806 GRIN2BQ13224 1484 aa32.05■■■□□ 2.72
CLN6-201ENST00000249806 ADAMTS12P58397 1594 aa32.05■■■□□ 2.72
CLN6-201ENST00000249806 IFT140Q96RY7 1462 aa32.03■■■□□ 2.72
CLN6-201ENST00000249806 LRRIQ1Q96JM4 1722 aa31.99■■■□□ 2.71
CLN6-201ENST00000249806 RAB3GAP2Q9H2M9 1393 aa31.98■■■□□ 2.71
CLN6-201ENST00000249806 ERCC6Q03468 1493 aa31.96■■■□□ 2.71
CLN6-201ENST00000249806 IQGAP2Q13576 1575 aa31.94■■■□□ 2.7
CLN6-201ENST00000249806 MTUS2Q5JR59 1369 aa31.93■■■□□ 2.7
CLN6-201ENST00000249806 SETD5Q9C0A6 1442 aa31.9■■■□□ 2.7
CLN6-201ENST00000249806 EIF4G3O43432 1585 aaKnown RBP31.83■■■□□ 2.69
CLN6-201ENST00000249806 THOC2Q8NI27 1593 aaKnown RBP31.83■■■□□ 2.69
CLN6-201ENST00000249806 FGD6Q6ZV73 1430 aa31.82■■■□□ 2.68
CLN6-201ENST00000249806 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.81■■■□□ 2.681e-10■■□□□ 12.6
CLN6-201ENST00000249806 NCOA2Q15596 1464 aa31.77■■■□□ 2.68
CLN6-201ENST00000249806 MAPKBP1O60336 1514 aa31.74■■■□□ 2.67
CLN6-201ENST00000249806 UGGT2Q9NYU1 1516 aa31.74■■■□□ 2.67
CLN6-201ENST00000249806 MAGI3Q5TCQ9 1506 aa31.73■■■□□ 2.67
CLN6-201ENST00000249806 EHBP1L1Q8N3D4 1523 aa31.72■■■□□ 2.67
CLN6-201ENST00000249806 GRIN2AQ12879 1464 aa31.71■■■□□ 2.67
CLN6-201ENST00000249806 KIAA0586Q9BVV6 1533 aa31.71■■■□□ 2.67
CLN6-201ENST00000249806 SUPT6HQ7KZ85 1726 aaKnown RBP31.71■■■□□ 2.67
CLN6-201ENST00000249806 CCDC18Q5T9S5 1454 aa31.71■■■□□ 2.67
CLN6-201ENST00000249806 HECW1Q76N89 1606 aa31.7■■■□□ 2.66
CLN6-201ENST00000249806 MYOM3Q5VTT5 1437 aa31.69■■■□□ 2.66
CLN6-201ENST00000249806 EPRSP07814 1512 aaKnown RBP31.67■■■□□ 2.66
CLN6-201ENST00000249806 ARID3CA6NKF2 412 aa31.67■■■□□ 2.66
CLN6-201ENST00000249806 DISP1Q96F81 1524 aa31.63■■■□□ 2.65
CLN6-201ENST00000249806 PTPRKQ15262 1439 aa31.63■■■□□ 2.65
CLN6-201ENST00000249806 CDK13Q14004 1512 aaKnown RBP31.63■■■□□ 2.65
CLN6-201ENST00000249806 CHMP7Q8WUX9 453 aaPredicted RBP31.62■■■□□ 2.65
CLN6-201ENST00000249806 MAGI1Q96QZ7 1491 aaPredicted RBP31.61■■■□□ 2.65
CLN6-201ENST00000249806 ARHGEF11O15085 1522 aa31.61■■■□□ 2.65
CLN6-201ENST00000249806 KIAA0556O60303 1618 aa31.6■■■□□ 2.65
CLN6-201ENST00000249806 FBLN2P98095 1184 aa31.59■■■□□ 2.65
CLN6-201ENST00000249806 MIER1Q8N108 512 aa31.56■■■□□ 2.64
CLN6-201ENST00000249806 SIN3AQ96ST3 1273 aa31.55■■■□□ 2.64
CLN6-201ENST00000249806 SYNJ2O15056 1496 aa31.55■■■□□ 2.64
CLN6-201ENST00000249806 PTPN23Q9H3S7 1636 aa31.54■■■□□ 2.64
CLN6-201ENST00000249806 CEP170Q5SW79 1584 aa31.52■■■□□ 2.64
CLN6-201ENST00000249806 NEUROD1Q13562 356 aa31.51■■■□□ 2.63
CLN6-201ENST00000249806 HFM1A2PYH4 1435 aa31.49■■■□□ 2.63
CLN6-201ENST00000249806 SCAF1Q9H7N4 1312 aaKnown RBP31.46■■■□□ 2.63
CLN6-201ENST00000249806 NAIPQ13075 1403 aa31.44■■■□□ 2.62
CLN6-201ENST00000249806 NUP153P49790 1475 aaKnown RBP31.44■■■□□ 2.62
CLN6-201ENST00000249806 ACIN1Q9UKV3 1341 aaKnown RBP31.42■■■□□ 2.62
CLN6-201ENST00000249806 RAPGEF6Q8TEU7 1601 aa31.41■■■□□ 2.62
CLN6-201ENST00000249806 TCOF1Q13428 1488 aaKnown RBP31.41■■■□□ 2.62
CLN6-201ENST00000249806 CHIC2Q9UKJ5 165 aa31.4■■■□□ 2.62
CLN6-201ENST00000249806 JPH4Q96JJ6 628 aa31.38■■■□□ 2.61
CLN6-201ENST00000249806 NUP160Q12769 1436 aa31.37■■■□□ 2.61
CLN6-201ENST00000249806 RRP7BPQ9NSQ0 103 aa31.36■■■□□ 2.61
CLN6-201ENST00000249806 MIA2Q96PC5 1412 aa31.35■■■□□ 2.61
CLN6-201ENST00000249806 UACAQ9BZF9 1416 aa31.35■■■□□ 2.61
CLN6-201ENST00000249806 CENPBP07199 599 aaPredicted RBP31.34■■■□□ 2.61
CLN6-201ENST00000249806 PLB1Q6P1J6 1458 aa31.32■■■□□ 2.6
CLN6-201ENST00000249806 YTHDC1Q96MU7 727 aaKnown RBP31.3■■■□□ 2.6
CLN6-201ENST00000249806 CDK11AQ9UQ88 783 aaPredicted RBP31.29■■■□□ 2.6
CLN6-201ENST00000249806 TIMELESSQ9UNS1 1208 aa31.28■■■□□ 2.6
CLN6-201ENST00000249806 CARMIL2Q6F5E8 1435 aa31.28■■■□□ 2.6
CLN6-201ENST00000249806 PRG4Q92954 1404 aaPredicted RBP31.23■■■□□ 2.59
CLN6-201ENST00000249806 ZNF644Q9H582 1327 aaPredicted RBP31.22■■■□□ 2.59
CLN6-201ENST00000249806 PPP1R15AO75807 674 aaPredicted RBP31.21■■■□□ 2.59
CLN6-201ENST00000249806 GCC2Q8IWJ2 1684 aa31.2■■■□□ 2.58
CLN6-201ENST00000249806 TROQ12816 1431 aaPredicted RBP31.17■■■□□ 2.58
CLN6-201ENST00000249806 KDM6BO15054 1643 aa31.17■■■□□ 2.58
CLN6-201ENST00000249806 AKNAQ7Z591 1439 aa31.16■■■□□ 2.58
CLN6-201ENST00000249806 TRIM52Q96A61 297 aa31.13■■■□□ 2.57
CLN6-201ENST00000249806 DAPK1P53355 1430 aa31.13■■■□□ 2.57
CLN6-201ENST00000249806 TONSLQ96HA7 1378 aa31.12■■■□□ 2.57
CLN6-201ENST00000249806 ABCC5O15440 1437 aa31.1■■■□□ 2.57
CLN6-201ENST00000249806 DNMT1P26358 1616 aaKnown RBP31.08■■■□□ 2.57
CLN6-201ENST00000249806 KIF14Q15058 1648 aa31.08■■■□□ 2.57
CLN6-201ENST00000249806 DENND4BO75064 1496 aaPredicted RBP31.07■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms