RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 EFCAB5A4FU69 1503 aa24.13■■□□□ 1.45
UBE3D-201ENST00000237186 ABCA5Q8WWZ7 1642 aa24.11■■□□□ 1.45
UBE3D-201ENST00000237186 TDRD9Q8NDG6 1382 aaKnown RBP24.11■■□□□ 1.45
UBE3D-201ENST00000237186 ERCC6Q03468 1493 aa24.11■■□□□ 1.45
UBE3D-201ENST00000237186 TARBP1Q13395 1621 aaKnown RBP24.09■■□□□ 1.45
UBE3D-201ENST00000237186 GAPVD1Q14C86 1478 aa24.09■■□□□ 1.45
UBE3D-201ENST00000237186 LRRC9Q6ZRR7 1453 aa24.09■■□□□ 1.45
UBE3D-201ENST00000237186 WDR62O43379 1518 aa24.08■■□□□ 1.45
UBE3D-201ENST00000237186 AQRO60306 1485 aaKnown RBP eCLIP24.07■■□□□ 1.44
UBE3D-201ENST00000237186 ZNF316A6NFI3 1004 aaPredicted RBP24.03■■□□□ 1.44
UBE3D-201ENST00000237186 DIEXFQ68CQ4 756 aaKnown RBP24.02■■□□□ 1.44
UBE3D-201ENST00000237186 DHX57Q6P158 1386 aaKnown RBP24.02■■□□□ 1.44
UBE3D-201ENST00000237186 CASKIN1Q8WXD9 1431 aa24.02■■□□□ 1.44
UBE3D-201ENST00000237186 FYCO1Q9BQS8 1478 aa24.01■■□□□ 1.43
UBE3D-201ENST00000237186 FHOD3Q2V2M9 1422 aa24.01■■□□□ 1.43
UBE3D-201ENST00000237186 CTTNBP2Q8WZ74 1663 aa24■■□□□ 1.43
UBE3D-201ENST00000237186 PCF11O94913 1555 aaKnown RBP23.99■■□□□ 1.43
UBE3D-201ENST00000237186 P3H3Q8IVL6 736 aa23.98■■□□□ 1.43
UBE3D-201ENST00000237186 FMN1Q68DA7 1419 aa23.97■■□□□ 1.43
UBE3D-201ENST00000237186 CFAP43Q8NDM7 1665 aa23.97■■□□□ 1.43
UBE3D-201ENST00000237186 IFT140Q96RY7 1462 aa23.96■■□□□ 1.43
UBE3D-201ENST00000237186 THOC2Q8NI27 1593 aaKnown RBP23.96■■□□□ 1.43
UBE3D-201ENST00000237186 PHLDB1Q86UU1 1377 aa23.94■■□□□ 1.42
UBE3D-201ENST00000237186 SAMD9Q5K651 1589 aa23.9■■□□□ 1.42
UBE3D-201ENST00000237186 SNAPC4Q5SXM2 1469 aa23.88■■□□□ 1.41
UBE3D-201ENST00000237186 PBRM1Q86U86 1689 aa23.87■■□□□ 1.41
UBE3D-201ENST00000237186 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.87■■□□□ 1.41
UBE3D-201ENST00000237186 ZNF608Q9ULD9 1512 aaPredicted RBP23.86■■□□□ 1.41
UBE3D-201ENST00000237186 GRIN2BQ13224 1484 aa23.84■■□□□ 1.41
UBE3D-201ENST00000237186 ATP1B4Q9UN42 357 aaPredicted RBP23.82■■□□□ 1.4
UBE3D-201ENST00000237186 RAB3GAP2Q9H2M9 1393 aa23.8■■□□□ 1.4
UBE3D-201ENST00000237186 SETD5Q9C0A6 1442 aa23.79■■□□□ 1.4
UBE3D-201ENST00000237186 ITGAEP38570 1179 aa23.78■■□□□ 1.4
UBE3D-201ENST00000237186 ADAMTS12P58397 1594 aa23.77■■□□□ 1.4
UBE3D-201ENST00000237186 EIF4G3O43432 1585 aaKnown RBP23.75■■□□□ 1.39
UBE3D-201ENST00000237186 FAM50AQ14320 339 aaKnown RBP23.73■■□□□ 1.39
UBE3D-201ENST00000237186 MTUS2Q5JR59 1369 aa23.7■■□□□ 1.38
UBE3D-201ENST00000237186 FGD6Q6ZV73 1430 aa23.69■■□□□ 1.38
UBE3D-201ENST00000237186 IQGAP2Q13576 1575 aa23.67■■□□□ 1.38
UBE3D-201ENST00000237186 MAPKBP1O60336 1514 aa23.65■■□□□ 1.38
UBE3D-201ENST00000237186 CCDC18Q5T9S5 1454 aa23.63■■□□□ 1.37
UBE3D-201ENST00000237186 UGGT2Q9NYU1 1516 aa23.62■■□□□ 1.37
UBE3D-201ENST00000237186 EHBP1L1Q8N3D4 1523 aa23.61■■□□□ 1.37
UBE3D-201ENST00000237186 NCOA2Q15596 1464 aa23.61■■□□□ 1.37
UBE3D-201ENST00000237186 MAGI1Q96QZ7 1491 aaPredicted RBP23.6■■□□□ 1.37
UBE3D-201ENST00000237186 ACIN1Q9UKV3 1341 aaKnown RBP23.6■■□□□ 1.37
UBE3D-201ENST00000237186 LRRIQ1Q96JM4 1722 aa23.59■■□□□ 1.37
UBE3D-201ENST00000237186 MYOM3Q5VTT5 1437 aa23.59■■□□□ 1.37
UBE3D-201ENST00000237186 ARHGEF11O15085 1522 aa23.58■■□□□ 1.37
UBE3D-201ENST00000237186 KIAA0586Q9BVV6 1533 aa23.57■■□□□ 1.36
UBE3D-201ENST00000237186 CENPBP07199 599 aaPredicted RBP23.56■■□□□ 1.36
UBE3D-201ENST00000237186 GRIN2AQ12879 1464 aa23.55■■□□□ 1.36
UBE3D-201ENST00000237186 SCAF1Q9H7N4 1312 aaKnown RBP23.55■■□□□ 1.36
UBE3D-201ENST00000237186 HECW1Q76N89 1606 aa23.55■■□□□ 1.36
UBE3D-201ENST00000237186 TIMELESSQ9UNS1 1208 aa23.54■■□□□ 1.36
UBE3D-201ENST00000237186 SUPT6HQ7KZ85 1726 aaKnown RBP23.54■■□□□ 1.36
UBE3D-201ENST00000237186 SYNJ2O15056 1496 aa23.52■■□□□ 1.36
UBE3D-201ENST00000237186 MIER1Q8N108 512 aa23.52■■□□□ 1.36
UBE3D-201ENST00000237186 HFM1A2PYH4 1435 aa23.51■■□□□ 1.35
UBE3D-201ENST00000237186 EPRSP07814 1512 aaKnown RBP23.51■■□□□ 1.35
UBE3D-201ENST00000237186 NEUROD1Q13562 356 aa23.51■■□□□ 1.35
UBE3D-201ENST00000237186 MAGI3Q5TCQ9 1506 aa23.5■■□□□ 1.35
UBE3D-201ENST00000237186 CHMP7Q8WUX9 453 aaPredicted RBP23.5■■□□□ 1.35
UBE3D-201ENST00000237186 PTPRKQ15262 1439 aa23.5■■□□□ 1.35
UBE3D-201ENST00000237186 TCOF1Q13428 1488 aaKnown RBP23.46■■□□□ 1.35
UBE3D-201ENST00000237186 DISP1Q96F81 1524 aa23.46■■□□□ 1.35
UBE3D-201ENST00000237186 FBLN2P98095 1184 aa23.44■■□□□ 1.34
UBE3D-201ENST00000237186 MIA2Q96PC5 1412 aa23.42■■□□□ 1.34
UBE3D-201ENST00000237186 NAIPQ13075 1403 aa23.41■■□□□ 1.34
UBE3D-201ENST00000237186 KIAA0556O60303 1618 aa23.41■■□□□ 1.34
UBE3D-201ENST00000237186 PTPN23Q9H3S7 1636 aa23.41■■□□□ 1.34
UBE3D-201ENST00000237186 CEP170Q5SW79 1584 aa23.4■■□□□ 1.34
UBE3D-201ENST00000237186 UACAQ9BZF9 1416 aa23.4■■□□□ 1.34
UBE3D-201ENST00000237186 SIN3AQ96ST3 1273 aa23.39■■□□□ 1.33
UBE3D-201ENST00000237186 CDK13Q14004 1512 aaKnown RBP23.37■■□□□ 1.33
UBE3D-201ENST00000237186 NUP160Q12769 1436 aa23.36■■□□□ 1.33
UBE3D-201ENST00000237186 AKNAQ7Z591 1439 aa23.35■■□□□ 1.33
UBE3D-201ENST00000237186 NUP153P49790 1475 aaKnown RBP23.32■■□□□ 1.32
UBE3D-201ENST00000237186 PPP1R15AO75807 674 aaPredicted RBP23.3■■□□□ 1.32
UBE3D-201ENST00000237186 CDK11AQ9UQ88 783 aaPredicted RBP23.28■■□□□ 1.32
UBE3D-201ENST00000237186 RAPGEF6Q8TEU7 1601 aa23.27■■□□□ 1.32
UBE3D-201ENST00000237186 JPH4Q96JJ6 628 aa23.24■■□□□ 1.31
UBE3D-201ENST00000237186 CARMIL2Q6F5E8 1435 aa23.22■■□□□ 1.31
UBE3D-201ENST00000237186 GTF3C3Q9Y5Q9 886 aa23.2■■□□□ 1.3
UBE3D-201ENST00000237186 YTHDC1Q96MU7 727 aaKnown RBP23.19■■□□□ 1.3
UBE3D-201ENST00000237186 ROCK1Q13464 1354 aa23.19■■□□□ 1.3
UBE3D-201ENST00000237186 GCC2Q8IWJ2 1684 aa23.19■■□□□ 1.3
UBE3D-201ENST00000237186 ARID3CA6NKF2 412 aa23.19■■□□□ 1.3
UBE3D-201ENST00000237186 RRP7BPQ9NSQ0 103 aa23.19■■□□□ 1.3
UBE3D-201ENST00000237186 TROQ12816 1431 aaPredicted RBP23.18■■□□□ 1.3
UBE3D-201ENST00000237186 CHD1O14646 1710 aa23.18■■□□□ 1.3
UBE3D-201ENST00000237186 TONSLQ96HA7 1378 aa23.17■■□□□ 1.3
UBE3D-201ENST00000237186 CHIC2Q9UKJ5 165 aa23.17■■□□□ 1.3
UBE3D-201ENST00000237186 PLB1Q6P1J6 1458 aa23.14■■□□□ 1.3
UBE3D-201ENST00000237186 DAPK1P53355 1430 aa23.14■■□□□ 1.29
UBE3D-201ENST00000237186 ABCC5O15440 1437 aa23.13■■□□□ 1.29
UBE3D-201ENST00000237186 PRG4Q92954 1404 aaPredicted RBP23.11■■□□□ 1.29
UBE3D-201ENST00000237186 DENND4BO75064 1496 aaPredicted RBP23.11■■□□□ 1.29
UBE3D-201ENST00000237186 DNMT1P26358 1616 aaKnown RBP23.1■■□□□ 1.29
UBE3D-201ENST00000237186 GPATCH8Q9UKJ3 1502 aaKnown RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms