RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 NISCHQ9Y2I1 1504 aa34.69■■■■□ 3.14
UBE3D-201ENST00000237186 CCDC180Q9P1Z9 1646 aa29.82■■■□□ 2.37
UBE3D-201ENST00000237186 ZCCHC6Q5VYS8 1495 aaKnown RBP29.3■■■□□ 2.28
UBE3D-201ENST00000237186 SHROOM4Q9ULL8 1493 aa28.88■■■□□ 2.21
UBE3D-201ENST00000237186 DCAF1Q9Y4B6 1507 aa28.68■■■□□ 2.18
UBE3D-201ENST00000237186 DCAF8L2P0C7V8 631 aa28.45■■■□□ 2.15
UBE3D-201ENST00000237186 SUPT5HO00267 1087 aaKnown RBP28.22■■■□□ 2.11
UBE3D-201ENST00000237186 ABCC9O60706 1549 aa28.15■■■□□ 2.1
UBE3D-201ENST00000237186 MYO15BQ96JP2 1530 aa28.05■■■□□ 2.08
UBE3D-201ENST00000237186 NACADO15069 1562 aa27.77■■■□□ 2.04
UBE3D-201ENST00000237186 SCRIBQ14160 1630 aa27.54■■■□□ 2
UBE3D-201ENST00000237186 RB1CC1Q8TDY2 1594 aa27.49■■□□□ 1.99
UBE3D-201ENST00000237186 CHIC1Q5VXU3 224 aa27.48■■□□□ 1.99
UBE3D-201ENST00000237186 RSF1Q96T23 1441 aaPredicted RBP27.28■■□□□ 1.96
UBE3D-201ENST00000237186 CECR2Q9BXF3 1484 aa26.93■■□□□ 1.9
UBE3D-201ENST00000237186 UNC13AQ9UPW8 1703 aa26.92■■□□□ 1.9
UBE3D-201ENST00000237186 MROH2BQ7Z745 1585 aa26.84■■□□□ 1.89
UBE3D-201ENST00000237186 BAZ1AQ9NRL2 1556 aaPredicted RBP26.68■■□□□ 1.86
UBE3D-201ENST00000237186 BICRAQ9NZM4 1560 aa26.68■■□□□ 1.86
UBE3D-201ENST00000237186 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
UBE3D-201ENST00000237186 WIZO95785 1651 aa26.59■■□□□ 1.85
UBE3D-201ENST00000237186 TRIM41Q8WV44 630 aa26.48■■□□□ 1.83
UBE3D-201ENST00000237186 LOC105371045A0A1W2PR82 267 aa26.46■■□□□ 1.83
UBE3D-201ENST00000237186 SMARCA4P51532 1647 aa26.44■■□□□ 1.82
UBE3D-201ENST00000237186 TOP2AP11388 1531 aaKnown RBP26.36■■□□□ 1.81
UBE3D-201ENST00000237186 EIF4G1Q04637 1599 aaKnown RBP26.25■■□□□ 1.79
UBE3D-201ENST00000237186 CCDC88BA6NC98 1476 aa26.17■■□□□ 1.78
UBE3D-201ENST00000237186 SMARCA2P51531 1590 aa26.14■■□□□ 1.78
UBE3D-201ENST00000237186 PEG3Q9GZU2 1588 aa26.12■■□□□ 1.77
UBE3D-201ENST00000237186 PCGF6Q9BYE7 350 aa26.06■■□□□ 1.76
UBE3D-201ENST00000237186 FAM9AQ8IZU1 332 aaPredicted RBP26.01■■□□□ 1.75
UBE3D-201ENST00000237186 HRCP23327 699 aa25.98■■□□□ 1.75
UBE3D-201ENST00000237186 ATAD2BQ9ULI0 1458 aa25.92■■□□□ 1.74
UBE3D-201ENST00000237186 TRIM26Q12899 539 aaPredicted RBP25.87■■□□□ 1.73
UBE3D-201ENST00000237186 ABCC8Q09428 1581 aa25.82■■□□□ 1.72
UBE3D-201ENST00000237186 BAZ1BQ9UIG0 1483 aaKnown RBP25.79■■□□□ 1.72
UBE3D-201ENST00000237186 EEA1Q15075 1411 aa25.66■■□□□ 1.7
UBE3D-201ENST00000237186 NCAPD3P42695 1498 aa25.65■■□□□ 1.7
UBE3D-201ENST00000237186 WRNQ14191 1432 aaPredicted RBP eCLIP25.61■■□□□ 1.69
UBE3D-201ENST00000237186 HMGXB3Q12766 1538 aa25.61■■□□□ 1.69
UBE3D-201ENST00000237186 EHMT2Q96KQ7 1210 aa25.59■■□□□ 1.69
UBE3D-201ENST00000237186 SOGA1O94964 1423 aa25.58■■□□□ 1.69
UBE3D-201ENST00000237186 CSRNP3Q8WYN3 585 aa25.51■■□□□ 1.67
UBE3D-201ENST00000237186 TNIKQ9UKE5 1360 aa25.46■■□□□ 1.67
UBE3D-201ENST00000237186 CC2D2AQ9P2K1 1620 aa25.43■■□□□ 1.66
UBE3D-201ENST00000237186 RUSC2Q8N2Y8 1516 aa25.43■■□□□ 1.66
UBE3D-201ENST00000237186 SYNJ1O43426 1573 aa25.42■■□□□ 1.66
UBE3D-201ENST00000237186 CEP162Q5TB80 1403 aa25.34■■□□□ 1.65
UBE3D-201ENST00000237186 GOLGA3Q08378 1498 aa25.32■■□□□ 1.64
UBE3D-201ENST00000237186 TOP2BQ02880 1626 aa25.25■■□□□ 1.63
UBE3D-201ENST00000237186 ZEB1P37275 1124 aaPredicted RBP25.25■■□□□ 1.63
UBE3D-201ENST00000237186 CEP164Q9UPV0 1460 aa25.25■■□□□ 1.63
UBE3D-201ENST00000237186 PPARGC1BQ86YN6 1023 aaKnown RBP25.23■■□□□ 1.63
UBE3D-201ENST00000237186 UBTFP17480 764 aaKnown RBP25.22■■□□□ 1.63
UBE3D-201ENST00000237186 KIF21BO75037 1637 aa25.22■■□□□ 1.63
UBE3D-201ENST00000237186 CFTRP13569 1480 aa25.2■■□□□ 1.62
UBE3D-201ENST00000237186 BIVM-ERCC5R4GMW8 1640 aa25.17■■□□□ 1.62
UBE3D-201ENST00000237186 CUX1P39880 1505 aa25.03■■□□□ 1.6
UBE3D-201ENST00000237186 CADPSQ9ULU8 1353 aa25.03■■□□□ 1.6
UBE3D-201ENST00000237186 RAPGEF2Q9Y4G8 1499 aa25■■□□□ 1.59
UBE3D-201ENST00000237186 CLIP1P30622 1438 aa24.97■■□□□ 1.59
UBE3D-201ENST00000237186 PRXQ9BXM0 1461 aa24.95■■□□□ 1.58
UBE3D-201ENST00000237186 PRDM2Q13029 1718 aa24.95■■□□□ 1.58
UBE3D-201ENST00000237186 ERICH3Q5RHP9 1530 aa24.93■■□□□ 1.58
UBE3D-201ENST00000237186 KIF27Q86VH2 1401 aa24.89■■□□□ 1.58
UBE3D-201ENST00000237186 VPS8Q8N3P4 1428 aa24.87■■□□□ 1.57
UBE3D-201ENST00000237186 DNAJC5BQ9UF47 199 aa24.82■■□□□ 1.56
UBE3D-201ENST00000237186 NESP48681 1621 aa24.77■■□□□ 1.56
UBE3D-201ENST00000237186 FANCD2Q9BXW9 1451 aa24.75■■□□□ 1.55
UBE3D-201ENST00000237186 LAMC3Q9Y6N6 1575 aa24.73■■□□□ 1.55
UBE3D-201ENST00000237186 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.7■■□□□ 1.55
UBE3D-201ENST00000237186 TTBK1Q5TCY1 1321 aaPredicted RBP24.69■■□□□ 1.54
UBE3D-201ENST00000237186 CCER1Q8TC90 406 aaPredicted RBP24.68■■□□□ 1.54
UBE3D-201ENST00000237186 IGF1RP08069 1367 aa24.66■■□□□ 1.54
UBE3D-201ENST00000237186 APLP2Q06481 763 aa24.64■■□□□ 1.53
UBE3D-201ENST00000237186 CUX2O14529 1486 aa24.63■■□□□ 1.53
UBE3D-201ENST00000237186 FGD5Q6ZNL6 1462 aa24.62■■□□□ 1.53
UBE3D-201ENST00000237186 ARAP1Q96P48 1450 aa24.61■■□□□ 1.53
UBE3D-201ENST00000237186 PDS5BQ9NTI5 1447 aa24.56■■□□□ 1.52
UBE3D-201ENST00000237186 RANGAP1P46060 587 aaPredicted RBP24.54■■□□□ 1.52
UBE3D-201ENST00000237186 DNMBPQ6XZF7 1577 aa24.54■■□□□ 1.52
UBE3D-201ENST00000237186 CARMIL1Q5VZK9 1371 aa24.52■■□□□ 1.52
UBE3D-201ENST00000237186 TOPBP1Q92547 1522 aa24.5■■□□□ 1.51
UBE3D-201ENST00000237186 ARHGAP35Q9NRY4 1499 aa24.48■■□□□ 1.51
UBE3D-201ENST00000237186 ABCA10Q8WWZ4 1543 aa24.45■■□□□ 1.5
UBE3D-201ENST00000237186 URB2Q14146 1524 aaKnown RBP24.44■■□□□ 1.5
UBE3D-201ENST00000237186 KIF21AQ7Z4S6 1674 aa24.42■■□□□ 1.5
UBE3D-201ENST00000237186 POLA1P09884 1462 aaPredicted RBP24.42■■□□□ 1.5
UBE3D-201ENST00000237186 RAD54L2Q9Y4B4 1467 aa24.36■■□□□ 1.49
UBE3D-201ENST00000237186 HNRNPUL2Q1KMD3 747 aaKnown RBP24.35■■□□□ 1.49
UBE3D-201ENST00000237186 KANK4Q5T7N3 995 aaPredicted RBP24.34■■□□□ 1.49
UBE3D-201ENST00000237186 MAP3K1Q13233 1512 aa24.29■■□□□ 1.48
UBE3D-201ENST00000237186 RRBP1Q9P2E9 1410 aaKnown RBP24.28■■□□□ 1.48
UBE3D-201ENST00000237186 MRC2Q9UBG0 1479 aa24.23■■□□□ 1.47
UBE3D-201ENST00000237186 CUL7Q14999 1698 aa24.22■■□□□ 1.47
UBE3D-201ENST00000237186 FHAD1B1AJZ9 1412 aa24.2■■□□□ 1.46
UBE3D-201ENST00000237186 WDR97A6NE52 1622 aa24.19■■□□□ 1.46
UBE3D-201ENST00000237186 CLSPNQ9HAW4 1339 aa24.15■■□□□ 1.46
UBE3D-201ENST00000237186 TIAM1Q13009 1591 aa24.14■■□□□ 1.46
UBE3D-201ENST00000237186 CCNB3Q8WWL7 1395 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms