RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 TIAM1Q13009 1591 aa29.11■■■□□ 2.25
YBX3-201ENST00000228251 PBRM1Q86U86 1689 aa29.07■■■□□ 2.24
YBX3-201ENST00000228251 RRBP1Q9P2E9 1410 aaKnown RBP29.07■■■□□ 2.24
YBX3-201ENST00000228251 CFAP43Q8NDM7 1665 aa29.06■■■□□ 2.24
YBX3-201ENST00000228251 PCF11O94913 1555 aaKnown RBP29.05■■■□□ 2.24
YBX3-201ENST00000228251 FHAD1B1AJZ9 1412 aa29.04■■■□□ 2.24
YBX3-201ENST00000228251 WDR62O43379 1518 aa29.02■■■□□ 2.24
YBX3-201ENST00000228251 SAMD9Q5K651 1589 aa29■■■□□ 2.23
YBX3-201ENST00000228251 AQRO60306 1485 aaKnown RBP eCLIP28.98■■■□□ 2.239e-7■■■■□ 22.7
YBX3-201ENST00000228251 HNRNPUL2Q1KMD3 747 aaKnown RBP28.96■■■□□ 2.23
YBX3-201ENST00000228251 FHOD3Q2V2M9 1422 aa28.95■■■□□ 2.22
YBX3-201ENST00000228251 FYCO1Q9BQS8 1478 aa28.95■■■□□ 2.22
YBX3-201ENST00000228251 LRRC9Q6ZRR7 1453 aa28.93■■■□□ 2.22
YBX3-201ENST00000228251 ADAMTS12P58397 1594 aa28.93■■■□□ 2.22
YBX3-201ENST00000228251 CASKIN1Q8WXD9 1431 aa28.91■■■□□ 2.22
YBX3-201ENST00000228251 IFT140Q96RY7 1462 aa28.88■■■□□ 2.21
YBX3-201ENST00000228251 SNAPC4Q5SXM2 1469 aa28.86■■■□□ 2.21
YBX3-201ENST00000228251 CCNB3Q8WWL7 1395 aa28.84■■■□□ 2.21
YBX3-201ENST00000228251 GRIN2BQ13224 1484 aa28.83■■■□□ 2.21
YBX3-201ENST00000228251 THOC2Q8NI27 1593 aaKnown RBP28.82■■■□□ 2.2
YBX3-201ENST00000228251 FMN1Q68DA7 1419 aa28.82■■■□□ 2.2
YBX3-201ENST00000228251 P3H3Q8IVL6 736 aa28.8■■■□□ 2.2
YBX3-201ENST00000228251 LRRIQ1Q96JM4 1722 aa28.78■■■□□ 2.2
YBX3-201ENST00000228251 ZNF608Q9ULD9 1512 aaPredicted RBP28.78■■■□□ 2.2
YBX3-201ENST00000228251 IQGAP2Q13576 1575 aa28.73■■■□□ 2.19
YBX3-201ENST00000228251 PHLDB1Q86UU1 1377 aa28.71■■■□□ 2.19
YBX3-201ENST00000228251 EIF4G3O43432 1585 aaKnown RBP28.71■■■□□ 2.19
YBX3-201ENST00000228251 ERCC6Q03468 1493 aa28.66■■■□□ 2.18
YBX3-201ENST00000228251 DHX57Q6P158 1386 aaKnown RBP28.64■■■□□ 2.18
YBX3-201ENST00000228251 UGGT2Q9NYU1 1516 aa28.62■■■□□ 2.17
YBX3-201ENST00000228251 CLSPNQ9HAW4 1339 aa28.62■■■□□ 2.17
YBX3-201ENST00000228251 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.56■■■□□ 2.16
YBX3-201ENST00000228251 GRIN2AQ12879 1464 aa28.53■■■□□ 2.16
YBX3-201ENST00000228251 KIAA0586Q9BVV6 1533 aa28.52■■■□□ 2.16
YBX3-201ENST00000228251 MAGI1Q96QZ7 1491 aaPredicted RBP28.52■■■□□ 2.16
YBX3-201ENST00000228251 ATP1B4Q9UN42 357 aaPredicted RBP28.5■■■□□ 2.15
YBX3-201ENST00000228251 HECW1Q76N89 1606 aa28.5■■■□□ 2.15
YBX3-201ENST00000228251 EHBP1L1Q8N3D4 1523 aa28.5■■■□□ 2.15
YBX3-201ENST00000228251 CCDC18Q5T9S5 1454 aa28.49■■■□□ 2.15
YBX3-201ENST00000228251 ARHGEF11O15085 1522 aa28.47■■■□□ 2.15
YBX3-201ENST00000228251 SUPT6HQ7KZ85 1726 aaKnown RBP28.46■■■□□ 2.15
YBX3-201ENST00000228251 MAGI3Q5TCQ9 1506 aa28.45■■■□□ 2.15
YBX3-201ENST00000228251 FGD6Q6ZV73 1430 aa28.45■■■□□ 2.15
YBX3-201ENST00000228251 KIAA0556O60303 1618 aa28.45■■■□□ 2.14
YBX3-201ENST00000228251 DISP1Q96F81 1524 aa28.44■■■□□ 2.14
YBX3-201ENST00000228251 MTUS2Q5JR59 1369 aa28.43■■■□□ 2.14
YBX3-201ENST00000228251 RAB3GAP2Q9H2M9 1393 aa28.43■■■□□ 2.14
YBX3-201ENST00000228251 NCOA2Q15596 1464 aa28.41■■■□□ 2.14
YBX3-201ENST00000228251 SYNJ2O15056 1496 aa28.41■■■□□ 2.14
YBX3-201ENST00000228251 SETD5Q9C0A6 1442 aa28.4■■■□□ 2.14
YBX3-201ENST00000228251 CEP170Q5SW79 1584 aa28.39■■■□□ 2.14
YBX3-201ENST00000228251 EPRSP07814 1512 aaKnown RBP28.38■■■□□ 2.13
YBX3-201ENST00000228251 ITGAEP38570 1179 aa28.37■■■□□ 2.13
YBX3-201ENST00000228251 MYOM3Q5VTT5 1437 aa28.35■■■□□ 2.13
YBX3-201ENST00000228251 MAPKBP1O60336 1514 aa28.35■■■□□ 2.13
YBX3-201ENST00000228251 ZNF316A6NFI3 1004 aaPredicted RBP28.33■■■□□ 2.13
YBX3-201ENST00000228251 FAM50AQ14320 339 aaKnown RBP28.33■■■□□ 2.13
YBX3-201ENST00000228251 NUP160Q12769 1436 aa28.3■■■□□ 2.12
YBX3-201ENST00000228251 CDK13Q14004 1512 aaKnown RBP28.29■■■□□ 2.12
YBX3-201ENST00000228251 PTPN23Q9H3S7 1636 aa28.26■■■□□ 2.12
YBX3-201ENST00000228251 RAPGEF6Q8TEU7 1601 aa28.25■■■□□ 2.11
YBX3-201ENST00000228251 DIEXFQ68CQ4 756 aaKnown RBP28.25■■■□□ 2.11
YBX3-201ENST00000228251 TCOF1Q13428 1488 aaKnown RBP28.24■■■□□ 2.11
YBX3-201ENST00000228251 PTPRKQ15262 1439 aa28.23■■■□□ 2.11
YBX3-201ENST00000228251 NUP153P49790 1475 aaKnown RBP28.22■■■□□ 2.11
YBX3-201ENST00000228251 CHMP7Q8WUX9 453 aaPredicted RBP28.17■■■□□ 2.1
YBX3-201ENST00000228251 HFM1A2PYH4 1435 aa28.16■■■□□ 2.1
YBX3-201ENST00000228251 MIA2Q96PC5 1412 aa28.12■■■□□ 2.09
YBX3-201ENST00000228251 NAIPQ13075 1403 aa28.08■■■□□ 2.09
YBX3-201ENST00000228251 GCC2Q8IWJ2 1684 aa28.07■■■□□ 2.08
YBX3-201ENST00000228251 CARMIL2Q6F5E8 1435 aa28.04■■■□□ 2.08
YBX3-201ENST00000228251 AKNAQ7Z591 1439 aa28.03■■■□□ 2.08
YBX3-201ENST00000228251 ADCY10Q96PN6 1610 aa28.02■■■□□ 2.08
YBX3-201ENST00000228251 PLB1Q6P1J6 1458 aa28.02■■■□□ 2.08
YBX3-201ENST00000228251 JPH4Q96JJ6 628 aa28.01■■■□□ 2.08
YBX3-201ENST00000228251 ABCA8O94911 1581 aa28■■■□□ 2.07
YBX3-201ENST00000228251 UACAQ9BZF9 1416 aa28■■■□□ 2.07
YBX3-201ENST00000228251 CHD1O14646 1710 aa27.98■■■□□ 2.07
YBX3-201ENST00000228251 FBLN2P98095 1184 aa27.98■■■□□ 2.07
YBX3-201ENST00000228251 TROQ12816 1431 aaPredicted RBP27.96■■■□□ 2.07
YBX3-201ENST00000228251 DNMT1P26358 1616 aaKnown RBP27.93■■■□□ 2.06
YBX3-201ENST00000228251 ARID3CA6NKF2 412 aa27.92■■■□□ 2.06
YBX3-201ENST00000228251 ITSN2Q9NZM3 1697 aa27.91■■■□□ 2.06
YBX3-201ENST00000228251 PRG4Q92954 1404 aaPredicted RBP27.89■■■□□ 2.06
YBX3-201ENST00000228251 SHROOM2Q13796 1616 aa27.89■■■□□ 2.05
YBX3-201ENST00000228251 KIF14Q15058 1648 aa27.89■■■□□ 2.05
YBX3-201ENST00000228251 TIMELESSQ9UNS1 1208 aa27.88■■■□□ 2.05
YBX3-201ENST00000228251 CDK11AQ9UQ88 783 aaPredicted RBP27.88■■■□□ 2.05
YBX3-201ENST00000228251 KDM6BO15054 1643 aa27.87■■■□□ 2.05
YBX3-201ENST00000228251 SIN3AQ96ST3 1273 aa27.86■■■□□ 2.05
YBX3-201ENST00000228251 DAPK1P53355 1430 aa27.84■■■□□ 2.05
YBX3-201ENST00000228251 ROCK1Q13464 1354 aa27.82■■■□□ 2.04
YBX3-201ENST00000228251 ABCC5O15440 1437 aa27.82■■■□□ 2.04
YBX3-201ENST00000228251 GPATCH8Q9UKJ3 1502 aaKnown RBP27.81■■■□□ 2.04
YBX3-201ENST00000228251 DENND4BO75064 1496 aaPredicted RBP27.8■■■□□ 2.04
YBX3-201ENST00000228251 ATP10BO94823 1461 aa27.8■■■□□ 2.04
YBX3-201ENST00000228251 CDC42BPAQ5VT25 1732 aa27.77■■■□□ 2.04
YBX3-201ENST00000228251 ABCC10Q5T3U5 1492 aa27.76■■■□□ 2.03
YBX3-201ENST00000228251 CROCC2H7BZ55 1655 aa27.76■■■□□ 2.03
YBX3-201ENST00000228251 CAMSAP2Q08AD1 1489 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms