RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 CCNB3Q8WWL7 1395 aa15.67■□□□□ 0.1
NOD1-201ENST00000222823 MTUS2Q5JR59 1369 aa15.66■□□□□ 0.1
NOD1-201ENST00000222823 FKBP8Q14318 412 aa15.66■□□□□ 0.1
NOD1-201ENST00000222823 CARMIL1Q5VZK9 1371 aa15.65■□□□□ 0.1
NOD1-201ENST00000222823 TSPY4P0CV99 314 aa15.65■□□□□ 0.1
NOD1-201ENST00000222823 TSPY10P0CW01 314 aa15.65■□□□□ 0.1
NOD1-201ENST00000222823 FAM9BQ8IZU0 186 aa15.65■□□□□ 0.1
NOD1-201ENST00000222823 FHAD1B1AJZ9 1412 aa15.63■□□□□ 0.09
NOD1-201ENST00000222823 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.62■□□□□ 0.09
NOD1-201ENST00000222823 STAG3Q9UJ98 1225 aa15.62■□□□□ 0.09
NOD1-201ENST00000222823 ANP32AP39687 249 aaKnown RBP15.62■□□□□ 0.09
NOD1-201ENST00000222823 KANK4Q5T7N3 995 aaPredicted RBP15.62■□□□□ 0.09
NOD1-201ENST00000222823 KIF21BO75037 1637 aa15.6■□□□□ 0.09
NOD1-201ENST00000222823 CHMP7Q8WUX9 453 aaPredicted RBP15.59■□□□□ 0.09
NOD1-201ENST00000222823 TMC1Q8TDI8 760 aa15.58■□□□□ 0.08
NOD1-201ENST00000222823 SALL2Q9Y467 1007 aaPredicted RBP15.58■□□□□ 0.08
NOD1-201ENST00000222823 SYNJ1O43426 1573 aa15.57■□□□□ 0.08
NOD1-201ENST00000222823 NPM2Q86SE8 214 aaKnown RBP15.56■□□□□ 0.08
NOD1-201ENST00000222823 KDM2AQ9Y2K7 1162 aa15.56■□□□□ 0.08
NOD1-201ENST00000222823 CADPSQ9ULU8 1353 aa15.54■□□□□ 0.08
NOD1-201ENST00000222823 NCAPD3P42695 1498 aa15.53■□□□□ 0.08
NOD1-201ENST00000222823 HIRIP3Q9BW71 556 aaPredicted RBP15.52■□□□□ 0.08
NOD1-201ENST00000222823 MRS2Q9HD23 443 aa15.52■□□□□ 0.08
NOD1-201ENST00000222823 BICRAQ9NZM4 1560 aa15.51■□□□□ 0.07
NOD1-201ENST00000222823 RRP7BPQ9NSQ0 103 aa15.51■□□□□ 0.07
NOD1-201ENST00000222823 EIF4G2P78344 907 aaKnown RBP eCLIP15.48■□□□□ 0.07
NOD1-201ENST00000222823 SETD5Q9C0A6 1442 aa15.48■□□□□ 0.07
NOD1-201ENST00000222823 PLPPR3Q6T4P5 718 aa15.47■□□□□ 0.07
NOD1-201ENST00000222823 EIF4G1Q04637 1599 aaKnown RBP15.47■□□□□ 0.07
NOD1-201ENST00000222823 PEG3Q9GZU2 1588 aa15.47■□□□□ 0.07
NOD1-201ENST00000222823 TIMELESSQ9UNS1 1208 aa15.47■□□□□ 0.07
NOD1-201ENST00000222823 ERICH3Q5RHP9 1530 aa15.46■□□□□ 0.07
NOD1-201ENST00000222823 CCDC136Q96JN2 1154 aa15.46■□□□□ 0.07
NOD1-201ENST00000222823 TOP2BQ02880 1626 aa15.45■□□□□ 0.06
NOD1-201ENST00000222823 UNC13AQ9UPW8 1703 aa15.45■□□□□ 0.06
NOD1-201ENST00000222823 PLEKHD1A6NEE1 506 aa15.45■□□□□ 0.06
NOD1-201ENST00000222823 DHX57Q6P158 1386 aaKnown RBP15.44■□□□□ 0.06
NOD1-201ENST00000222823 WDR43Q15061 677 aaKnown RBP eCLIP15.44■□□□□ 0.06
NOD1-201ENST00000222823 RAB3GAP2Q9H2M9 1393 aa15.43■□□□□ 0.06
NOD1-201ENST00000222823 SIN3AQ96ST3 1273 aa15.43■□□□□ 0.06
NOD1-201ENST00000222823 ARHGAP35Q9NRY4 1499 aa15.42■□□□□ 0.06
NOD1-201ENST00000222823 UPF2Q9HAU5 1272 aaKnown RBP15.41■□□□□ 0.06
NOD1-201ENST00000222823 KCNH8Q96L42 1107 aa15.41■□□□□ 0.06
NOD1-201ENST00000222823 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.41■□□□□ 0.06
NOD1-201ENST00000222823 HMGXB3Q12766 1538 aa15.4■□□□□ 0.06
NOD1-201ENST00000222823 PRXQ9BXM0 1461 aa15.4■□□□□ 0.06
NOD1-201ENST00000222823 HSP90AA1P07900 732 aaKnown RBP15.39■□□□□ 0.05
NOD1-201ENST00000222823 FMN1Q68DA7 1419 aa15.39■□□□□ 0.05
NOD1-201ENST00000222823 CFTRP13569 1480 aa15.39■□□□□ 0.05
NOD1-201ENST00000222823 IGF1RP08069 1367 aa15.38■□□□□ 0.05
NOD1-201ENST00000222823 RGL3Q3MIN7 710 aa15.36■□□□□ 0.05
NOD1-201ENST00000222823 CFDP1Q9UEE9 299 aaPredicted RBP15.36■□□□□ 0.05
NOD1-201ENST00000222823 FANCD2Q9BXW9 1451 aa15.34■□□□□ 0.05
NOD1-201ENST00000222823 IRX6P78412 446 aaPredicted RBP15.34■□□□□ 0.05
NOD1-201ENST00000222823 FGD5Q6ZNL6 1462 aa15.34■□□□□ 0.05
NOD1-201ENST00000222823 ARAP1Q96P48 1450 aa15.33■□□□□ 0.04
NOD1-201ENST00000222823 FHOD3Q2V2M9 1422 aa15.32■□□□□ 0.04
NOD1-201ENST00000222823 PDS5BQ9NTI5 1447 aa15.32■□□□□ 0.04
NOD1-201ENST00000222823 CUX1P39880 1505 aa15.31■□□□□ 0.04
NOD1-201ENST00000222823 TDRD9Q8NDG6 1382 aaKnown RBP15.29■□□□□ 0.04
NOD1-201ENST00000222823 RRBP1Q9P2E9 1410 aaKnown RBP15.29■□□□□ 0.04
NOD1-201ENST00000222823 ANP32BQ92688 251 aaKnown RBP15.27■□□□□ 0.03
NOD1-201ENST00000222823 SENP3Q9H4L4 574 aaPredicted RBP15.27■□□□□ 0.03
NOD1-201ENST00000222823 SUPT16HQ9Y5B9 1047 aaKnown RBP15.25■□□□□ 0.03
NOD1-201ENST00000222823 PPP1R15AO75807 674 aaPredicted RBP15.23■□□□□ 0.03
NOD1-201ENST00000222823 CCER2I3L3R5 266 aa15.23■□□□□ 0.03
NOD1-201ENST00000222823 CARD11Q9BXL7 1154 aa15.23■□□□□ 0.03
NOD1-201ENST00000222823 LRRC9Q6ZRR7 1453 aa15.22■□□□□ 0.03
NOD1-201ENST00000222823 CDCA8Q53HL2 280 aa15.21■□□□□ 0.03
NOD1-201ENST00000222823 BIVM-ERCC5R4GMW8 1640 aa15.2■□□□□ 0.02
NOD1-201ENST00000222823 KNSTRNQ9Y448 316 aa15.19■□□□□ 0.02
NOD1-201ENST00000222823 SENP3-EIF4A1A0A087X0R7 540 aa15.19■□□□□ 0.02
NOD1-201ENST00000222823 NBR1Q14596 966 aa15.19■□□□□ 0.02
NOD1-201ENST00000222823 RAD54L2Q9Y4B4 1467 aa15.18■□□□□ 0.02
NOD1-201ENST00000222823 PHLDB1Q86UU1 1377 aa15.18■□□□□ 0.02
NOD1-201ENST00000222823 MYH16Q9H6N6 1097 aa15.17■□□□□ 0.02
NOD1-201ENST00000222823 CFAP53Q96M91 514 aa15.15■□□□□ 0.02
NOD1-201ENST00000222823 CASKIN1Q8WXD9 1431 aa15.13■□□□□ 0.01
NOD1-201ENST00000222823 C14orf37Q86TY3 774 aa15.13■□□□□ 0.01
NOD1-201ENST00000222823 TIAM1Q13009 1591 aa15.12■□□□□ 0.01
NOD1-201ENST00000222823 PLEKHG5O94827 1062 aa15.11■□□□□ 0.01
NOD1-201ENST00000222823 GAPVD1Q14C86 1478 aa15.11■□□□□ 0.01
NOD1-201ENST00000222823 EIF5BO60841 1220 aaKnown RBP15.11■□□□□ 0.01
NOD1-201ENST00000222823 FYCO1Q9BQS8 1478 aa15.11■□□□□ 0.01
NOD1-201ENST00000222823 FGD6Q6ZV73 1430 aa15.1■□□□□ 0.01
NOD1-201ENST00000222823 CCDC18Q5T9S5 1454 aa15.1■□□□□ 0.01
NOD1-201ENST00000222823 EFCAB5A4FU69 1503 aa15.1■□□□□ 0.01
NOD1-201ENST00000222823 PPM1GO15355 546 aaPredicted RBP15.09■□□□□ 0.01
NOD1-201ENST00000222823 ZBTB7CA1YPR0 619 aa15.09■□□□□ 0.01
NOD1-201ENST00000222823 HSPA5P11021 654 aaKnown RBP15.09■□□□□ 0.01
NOD1-201ENST00000222823 MPHOSPH9Q99550 1183 aa15.09■□□□□ 0.01
NOD1-201ENST00000222823 ARID4BQ4LE39 1312 aaPredicted RBP15.08■□□□□ 0
NOD1-201ENST00000222823 NEUROD2Q15784 382 aa15.07■□□□□ 0
NOD1-201ENST00000222823 ARXQ96QS3 562 aa15.07■□□□□ 0
NOD1-201ENST00000222823 ERCC6Q03468 1493 aa15.07■□□□□ 0
NOD1-201ENST00000222823 MAP3K1Q13233 1512 aa15.06■□□□□ 0
NOD1-201ENST00000222823 TOPBP1Q92547 1522 aa15.05■□□□□ 0
NOD1-201ENST00000222823 CC2D2AQ9P2K1 1620 aa15.05■□□□□ 0
NOD1-201ENST00000222823 DCAF11Q8TEB1 546 aa15.05■□□□□ -0
NOD1-201ENST00000222823 MYOM3Q5VTT5 1437 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms