RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 NISCHQ9Y2I1 1504 aa21.23■□□□□ 0.99
NOD1-201ENST00000222823 DCAF8L2P0C7V8 631 aa20.13■□□□□ 0.81
NOD1-201ENST00000222823 SUPT5HO00267 1087 aaKnown RBP19.18■□□□□ 0.66
NOD1-201ENST00000222823 SHROOM4Q9ULL8 1493 aa18.94■□□□□ 0.62
NOD1-201ENST00000222823 EHMT2Q96KQ7 1210 aa18.44■□□□□ 0.54
NOD1-201ENST00000222823 APLP2Q06481 763 aa18.08■□□□□ 0.49
NOD1-201ENST00000222823 FAM9AQ8IZU1 332 aaPredicted RBP18.07■□□□□ 0.48
NOD1-201ENST00000222823 PCGF6Q9BYE7 350 aa17.87■□□□□ 0.45
NOD1-201ENST00000222823 ZCCHC6Q5VYS8 1495 aaKnown RBP17.82■□□□□ 0.44
NOD1-201ENST00000222823 TTBK1Q5TCY1 1321 aaPredicted RBP17.81■□□□□ 0.44
NOD1-201ENST00000222823 PELP1Q8IZL8 1130 aaKnown RBP17.8■□□□□ 0.44
NOD1-201ENST00000222823 CCDC180Q9P1Z9 1646 aa17.79■□□□□ 0.44
NOD1-201ENST00000222823 CHIC1Q5VXU3 224 aa17.79■□□□□ 0.44
NOD1-201ENST00000222823 TRIM41Q8WV44 630 aa17.76■□□□□ 0.43
NOD1-201ENST00000222823 RANGAP1P46060 587 aaPredicted RBP17.65■□□□□ 0.42
NOD1-201ENST00000222823 UBTFP17480 764 aaKnown RBP17.52■□□□□ 0.4
NOD1-201ENST00000222823 CCER1Q8TC90 406 aaPredicted RBP17.51■□□□□ 0.39
NOD1-201ENST00000222823 ZEB1P37275 1124 aaPredicted RBP17.51■□□□□ 0.39
NOD1-201ENST00000222823 ATP1B4Q9UN42 357 aaPredicted RBP17.47■□□□□ 0.39
NOD1-201ENST00000222823 HRCP23327 699 aa17.45■□□□□ 0.38
NOD1-201ENST00000222823 LOC105371045A0A1W2PR82 267 aa17.39■□□□□ 0.37
NOD1-201ENST00000222823 CENPBP07199 599 aaPredicted RBP17.37■□□□□ 0.37
NOD1-201ENST00000222823 TRIM26Q12899 539 aaPredicted RBP17.35■□□□□ 0.37
NOD1-201ENST00000222823 PPARGC1BQ86YN6 1023 aaKnown RBP17.23■□□□□ 0.35
NOD1-201ENST00000222823 ABCC9O60706 1549 aa17.21■□□□□ 0.35
NOD1-201ENST00000222823 DCAF1Q9Y4B6 1507 aa17.2■□□□□ 0.34
NOD1-201ENST00000222823 SCRIBQ14160 1630 aa17.09■□□□□ 0.33
NOD1-201ENST00000222823 MYO15BQ96JP2 1530 aa17.04■□□□□ 0.32
NOD1-201ENST00000222823 YTHDC1Q96MU7 727 aaKnown RBP17.03■□□□□ 0.32
NOD1-201ENST00000222823 ERICH6Q7L0X2 663 aa17.02■□□□□ 0.31
NOD1-201ENST00000222823 NEFLP07196 543 aa16.98■□□□□ 0.31
NOD1-201ENST00000222823 ITGAEP38570 1179 aa16.94■□□□□ 0.3
NOD1-201ENST00000222823 RSF1Q96T23 1441 aaPredicted RBP16.9■□□□□ 0.3
NOD1-201ENST00000222823 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.87■□□□□ 0.29
NOD1-201ENST00000222823 HNRNPUL2Q1KMD3 747 aaKnown RBP16.87■□□□□ 0.29
NOD1-201ENST00000222823 NACADO15069 1562 aa16.8■□□□□ 0.28
NOD1-201ENST00000222823 PABPN1Q86U42 306 aaKnown RBP eCLIP16.73■□□□□ 0.27
NOD1-201ENST00000222823 MYT1LQ9UL68 1186 aa16.73■□□□□ 0.27
NOD1-201ENST00000222823 POLR3GLQ9BT43 218 aa16.7■□□□□ 0.26
NOD1-201ENST00000222823 RB1CC1Q8TDY2 1594 aa16.68■□□□□ 0.26
NOD1-201ENST00000222823 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.25
NOD1-201ENST00000222823 CNGB1Q14028 1251 aaPredicted RBP16.55■□□□□ 0.24
NOD1-201ENST00000222823 CECR2Q9BXF3 1484 aa16.55■□□□□ 0.24
NOD1-201ENST00000222823 FAM50AQ14320 339 aaKnown RBP16.5■□□□□ 0.23
NOD1-201ENST00000222823 BAZ1AQ9NRL2 1556 aaPredicted RBP16.5■□□□□ 0.23
NOD1-201ENST00000222823 DIEXFQ68CQ4 756 aaKnown RBP16.49■□□□□ 0.23
NOD1-201ENST00000222823 MROH2BQ7Z745 1585 aa16.45■□□□□ 0.22
NOD1-201ENST00000222823 MYT1Q01538 1121 aa16.44■□□□□ 0.22
NOD1-201ENST00000222823 DAXXQ9UER7 740 aaPredicted RBP16.4■□□□□ 0.22
NOD1-201ENST00000222823 TRIM52Q96A61 297 aa16.39■□□□□ 0.21
NOD1-201ENST00000222823 EEA1Q15075 1411 aa16.38■□□□□ 0.21
NOD1-201ENST00000222823 NEUROD1Q13562 356 aa16.35■□□□□ 0.21
NOD1-201ENST00000222823 SLC4A1APQ9BWU0 796 aaKnown RBP16.33■□□□□ 0.2
NOD1-201ENST00000222823 CEP162Q5TB80 1403 aa16.28■□□□□ 0.2
NOD1-201ENST00000222823 WIZO95785 1651 aa16.27■□□□□ 0.2
NOD1-201ENST00000222823 TNIKQ9UKE5 1360 aa16.25■□□□□ 0.19
NOD1-201ENST00000222823 ZNF316A6NFI3 1004 aaPredicted RBP16.24■□□□□ 0.19
NOD1-201ENST00000222823 FBLN2P98095 1184 aa16.24■□□□□ 0.19
NOD1-201ENST00000222823 WRNQ14191 1432 aaPredicted RBP eCLIP16.24■□□□□ 0.19
NOD1-201ENST00000222823 GOLGA3Q08378 1498 aa16.24■□□□□ 0.19
NOD1-201ENST00000222823 CCDC88BA6NC98 1476 aa16.2■□□□□ 0.18
NOD1-201ENST00000222823 TOP2AP11388 1531 aaKnown RBP16.19■□□□□ 0.18
NOD1-201ENST00000222823 ZNF326Q5BKZ1 582 aaKnown RBP16.19■□□□□ 0.18
NOD1-201ENST00000222823 P3H3Q8IVL6 736 aa16.18■□□□□ 0.18
NOD1-201ENST00000222823 CLIP1P30622 1438 aa16.16■□□□□ 0.18
NOD1-201ENST00000222823 BAZ1BQ9UIG0 1483 aaKnown RBP16.16■□□□□ 0.18
NOD1-201ENST00000222823 ANP32CO43423 234 aa16.15■□□□□ 0.18
NOD1-201ENST00000222823 CLSPNQ9HAW4 1339 aa16.15■□□□□ 0.18
NOD1-201ENST00000222823 CEP164Q9UPV0 1460 aa16.13■□□□□ 0.17
NOD1-201ENST00000222823 ACIN1Q9UKV3 1341 aaKnown RBP16.12■□□□□ 0.17
NOD1-201ENST00000222823 ABCC8Q09428 1581 aa16.12■□□□□ 0.17
NOD1-201ENST00000222823 SOGA1O94964 1423 aa16.12■□□□□ 0.17
NOD1-201ENST00000222823 ARID3CA6NKF2 412 aa16.09■□□□□ 0.17
NOD1-201ENST00000222823 GTF3C3Q9Y5Q9 886 aa16.09■□□□□ 0.17
NOD1-201ENST00000222823 SMARCA4P51532 1647 aa16.08■□□□□ 0.17
NOD1-201ENST00000222823 BCANQ96GW7 911 aa16.05■□□□□ 0.16
NOD1-201ENST00000222823 RTL5Q5HYW3 569 aaPredicted RBP16.02■□□□□ 0.15
NOD1-201ENST00000222823 CDK11AQ9UQ88 783 aaPredicted RBP15.98■□□□□ 0.15
NOD1-201ENST00000222823 ZNF777Q9ULD5 760 aaPredicted RBP15.98■□□□□ 0.15
NOD1-201ENST00000222823 SMARCA2P51531 1590 aa15.97■□□□□ 0.15
NOD1-201ENST00000222823 KIF27Q86VH2 1401 aa15.93■□□□□ 0.14
NOD1-201ENST00000222823 SCAF1Q9H7N4 1312 aaKnown RBP15.91■□□□□ 0.14
NOD1-201ENST00000222823 VPS8Q8N3P4 1428 aa15.88■□□□□ 0.13
NOD1-201ENST00000222823 ATAD2BQ9ULI0 1458 aa15.86■□□□□ 0.13
NOD1-201ENST00000222823 ZBTB47Q9UFB7 747 aaPredicted RBP15.83■□□□□ 0.12
NOD1-201ENST00000222823 TONSLQ96HA7 1378 aa15.83■□□□□ 0.12
NOD1-201ENST00000222823 RUSC2Q8N2Y8 1516 aa15.81■□□□□ 0.12
NOD1-201ENST00000222823 NEFMP07197 916 aa15.8■□□□□ 0.12
NOD1-201ENST00000222823 CANXP27824 592 aaKnown RBP15.8■□□□□ 0.12
NOD1-201ENST00000222823 MIER1Q8N108 512 aa15.78■□□□□ 0.12
NOD1-201ENST00000222823 DDX10Q13206 875 aaKnown RBP15.76■□□□□ 0.11
NOD1-201ENST00000222823 SLC24A1O60721 1099 aa15.74■□□□□ 0.11
NOD1-201ENST00000222823 CHIC2Q9UKJ5 165 aa15.74■□□□□ 0.11
NOD1-201ENST00000222823 BCL11AQ9H165 835 aa15.72■□□□□ 0.11
NOD1-201ENST00000222823 RAPGEF2Q9Y4G8 1499 aa15.72■□□□□ 0.11
NOD1-201ENST00000222823 CHGAP10645 457 aaKnown RBP15.7■□□□□ 0.1
NOD1-201ENST00000222823 HNRNPUQ00839 825 aaKnown RBP eCLIP15.69■□□□□ 0.1
NOD1-201ENST00000222823 NPM1P06748 294 aaKnown RBP eCLIP15.68■□□□□ 0.1
NOD1-201ENST00000222823 CUX2O14529 1486 aa15.67■□□□□ 0.1
NOD1-201ENST00000222823 ESF1Q9H501 851 aaKnown RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms