RNA–Protein interactions for RNA: ENST00000219281.7

USB1-201, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USB1, Length 2,282 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-201ENST00000219281 ARHGAP35Q9NRY4 1499 aa25.42■■□□□ 1.66
USB1-201ENST00000219281 CLSPNQ9HAW4 1339 aa25.41■■□□□ 1.66
USB1-201ENST00000219281 RRBP1Q9P2E9 1410 aaKnown RBP25.33■■□□□ 1.65
USB1-201ENST00000219281 KIF21AQ7Z4S6 1674 aa25.31■■□□□ 1.64
USB1-201ENST00000219281 TDRD9Q8NDG6 1382 aaKnown RBP25.27■■□□□ 1.64
USB1-201ENST00000219281 WDR97A6NE52 1622 aa25.25■■□□□ 1.63
USB1-201ENST00000219281 CCNB3Q8WWL7 1395 aa25.24■■□□□ 1.63
USB1-201ENST00000219281 CUL7Q14999 1698 aa25.19■■□□□ 1.62
USB1-201ENST00000219281 ITGAEP38570 1179 aa25.19■■□□□ 1.62
USB1-201ENST00000219281 ABCA5Q8WWZ7 1642 aa25.18■■□□□ 1.62
USB1-201ENST00000219281 GAPVD1Q14C86 1478 aa25.17■■□□□ 1.62
USB1-201ENST00000219281 P3H3Q8IVL6 736 aa25.14■■□□□ 1.61
USB1-201ENST00000219281 TARBP1Q13395 1621 aaKnown RBP25.13■■□□□ 1.61
USB1-201ENST00000219281 MRC2Q9UBG0 1479 aa25.08■■□□□ 1.6
USB1-201ENST00000219281 TIAM1Q13009 1591 aa25.04■■□□□ 1.6
USB1-201ENST00000219281 RAB3GAP2Q9H2M9 1393 aa25.04■■□□□ 1.6
USB1-201ENST00000219281 FHOD3Q2V2M9 1422 aa25.03■■□□□ 1.6
USB1-201ENST00000219281 FHAD1B1AJZ9 1412 aa25.02■■□□□ 1.6
USB1-201ENST00000219281 MAP3K1Q13233 1512 aa25.02■■□□□ 1.6
USB1-201ENST00000219281 CTTNBP2Q8WZ74 1663 aa25■■□□□ 1.59
USB1-201ENST00000219281 AQRO60306 1485 aaKnown RBP eCLIP25■■□□□ 1.59
USB1-201ENST00000219281 EFCAB5A4FU69 1503 aa24.98■■□□□ 1.59
USB1-201ENST00000219281 LRRC9Q6ZRR7 1453 aa24.97■■□□□ 1.59
USB1-201ENST00000219281 MAPKBP1O60336 1514 aa24.95■■□□□ 1.58
USB1-201ENST00000219281 PHLDB1Q86UU1 1377 aa24.94■■□□□ 1.58
USB1-201ENST00000219281 PCF11O94913 1555 aaKnown RBP24.94■■□□□ 1.58
USB1-201ENST00000219281 SETD5Q9C0A6 1442 aa24.93■■□□□ 1.58
USB1-201ENST00000219281 ATP1B4Q9UN42 357 aaPredicted RBP24.91■■□□□ 1.58
USB1-201ENST00000219281 WDR62O43379 1518 aa24.9■■□□□ 1.58
USB1-201ENST00000219281 FAM50AQ14320 339 aaKnown RBP24.9■■□□□ 1.58
USB1-201ENST00000219281 CASKIN1Q8WXD9 1431 aa24.89■■□□□ 1.58
USB1-201ENST00000219281 ZNF608Q9ULD9 1512 aaPredicted RBP24.87■■□□□ 1.57
USB1-201ENST00000219281 PBRM1Q86U86 1689 aa24.87■■□□□ 1.57
USB1-201ENST00000219281 IFT140Q96RY7 1462 aa24.86■■□□□ 1.57
USB1-201ENST00000219281 FYCO1Q9BQS8 1478 aa24.86■■□□□ 1.57
USB1-201ENST00000219281 SAMD9Q5K651 1589 aa24.84■■□□□ 1.57
USB1-201ENST00000219281 FMN1Q68DA7 1419 aa24.84■■□□□ 1.57
USB1-201ENST00000219281 GRIN2BQ13224 1484 aa24.84■■□□□ 1.57
USB1-201ENST00000219281 CFAP43Q8NDM7 1665 aa24.82■■□□□ 1.56
USB1-201ENST00000219281 SNAPC4Q5SXM2 1469 aa24.81■■□□□ 1.56
USB1-201ENST00000219281 SIN3AQ96ST3 1273 aa24.81■■□□□ 1.56
USB1-201ENST00000219281 SUPT16HQ9Y5B9 1047 aaKnown RBP24.81■■□□□ 1.56
USB1-201ENST00000219281 ADAMTS12P58397 1594 aa24.8■■□□□ 1.56
USB1-201ENST00000219281 ERCC6Q03468 1493 aa24.79■■□□□ 1.56
USB1-201ENST00000219281 KCNH8Q96L42 1107 aa24.74■■□□□ 1.55
USB1-201ENST00000219281 MYT1Q01538 1121 aa24.7■■□□□ 1.55
USB1-201ENST00000219281 THOC2Q8NI27 1593 aaKnown RBP24.69■■□□□ 1.54
USB1-201ENST00000219281 DDX10Q13206 875 aaKnown RBP24.68■■□□□ 1.54
USB1-201ENST00000219281 IQGAP2Q13576 1575 aa24.68■■□□□ 1.54
USB1-201ENST00000219281 TIMELESSQ9UNS1 1208 aa24.65■■□□□ 1.54
USB1-201ENST00000219281 EIF4G3O43432 1585 aaKnown RBP24.64■■□□□ 1.54
USB1-201ENST00000219281 LRRIQ1Q96JM4 1722 aa24.64■■□□□ 1.54
USB1-201ENST00000219281 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.63■■□□□ 1.53
USB1-201ENST00000219281 MTUS2Q5JR59 1369 aa24.61■■□□□ 1.53
USB1-201ENST00000219281 PPP1R15AO75807 674 aaPredicted RBP24.59■■□□□ 1.53
USB1-201ENST00000219281 UGGT2Q9NYU1 1516 aa24.58■■□□□ 1.52
USB1-201ENST00000219281 KIAA0586Q9BVV6 1533 aa24.57■■□□□ 1.52
USB1-201ENST00000219281 GRIN2AQ12879 1464 aa24.57■■□□□ 1.52
USB1-201ENST00000219281 HIRIP3Q9BW71 556 aaPredicted RBP24.57■■□□□ 1.52
USB1-201ENST00000219281 FGD6Q6ZV73 1430 aa24.57■■□□□ 1.52
USB1-201ENST00000219281 MAGI1Q96QZ7 1491 aaPredicted RBP24.51■■□□□ 1.51
USB1-201ENST00000219281 MAGI3Q5TCQ9 1506 aa24.51■■□□□ 1.51
USB1-201ENST00000219281 NCOA2Q15596 1464 aa24.5■■□□□ 1.51
USB1-201ENST00000219281 DISP1Q96F81 1524 aa24.5■■□□□ 1.51
USB1-201ENST00000219281 CHMP7Q8WUX9 453 aaPredicted RBP24.5■■□□□ 1.51
USB1-201ENST00000219281 PTPRKQ15262 1439 aa24.48■■□□□ 1.51
USB1-201ENST00000219281 CCDC18Q5T9S5 1454 aa24.47■■□□□ 1.51
USB1-201ENST00000219281 SYNJ2O15056 1496 aa24.46■■□□□ 1.51
USB1-201ENST00000219281 EPRSP07814 1512 aaKnown RBP24.46■■□□□ 1.51
USB1-201ENST00000219281 TONSLQ96HA7 1378 aa24.46■■□□□ 1.51
USB1-201ENST00000219281 EHBP1L1Q8N3D4 1523 aa24.45■■□□□ 1.5
USB1-201ENST00000219281 HECW1Q76N89 1606 aa24.44■■□□□ 1.5
USB1-201ENST00000219281 FBLN2P98095 1184 aa24.44■■□□□ 1.5
USB1-201ENST00000219281 HFM1A2PYH4 1435 aa24.44■■□□□ 1.5
USB1-201ENST00000219281 MYOM3Q5VTT5 1437 aa24.44■■□□□ 1.5
USB1-201ENST00000219281 KIAA0556O60303 1618 aa24.43■■□□□ 1.5
USB1-201ENST00000219281 TSHZ2Q9NRE2 1034 aa24.42■■□□□ 1.5
USB1-201ENST00000219281 ARHGEF11O15085 1522 aa24.42■■□□□ 1.5
USB1-201ENST00000219281 UACAQ9BZF9 1416 aa24.42■■□□□ 1.5
USB1-201ENST00000219281 ARID3CA6NKF2 412 aa24.42■■□□□ 1.5
USB1-201ENST00000219281 SUPT6HQ7KZ85 1726 aaKnown RBP24.42■■□□□ 1.5
USB1-201ENST00000219281 CEP170Q5SW79 1584 aa24.41■■□□□ 1.5
USB1-201ENST00000219281 ANP32CO43423 234 aa24.41■■□□□ 1.5
USB1-201ENST00000219281 CDK13Q14004 1512 aaKnown RBP24.41■■□□□ 1.5
USB1-201ENST00000219281 PTPN23Q9H3S7 1636 aa24.4■■□□□ 1.5
USB1-201ENST00000219281 CCER2I3L3R5 266 aa24.4■■□□□ 1.5
USB1-201ENST00000219281 BCANQ96GW7 911 aa24.38■■□□□ 1.49
USB1-201ENST00000219281 NAIPQ13075 1403 aa24.37■■□□□ 1.49
USB1-201ENST00000219281 FKBP8Q14318 412 aa24.36■■□□□ 1.49
USB1-201ENST00000219281 NUP160Q12769 1436 aa24.35■■□□□ 1.49
USB1-201ENST00000219281 JPH4Q96JJ6 628 aa24.33■■□□□ 1.49
USB1-201ENST00000219281 NUP153P49790 1475 aaKnown RBP24.32■■□□□ 1.48
USB1-201ENST00000219281 TRIM52Q96A61 297 aa24.32■■□□□ 1.48
USB1-201ENST00000219281 TCOF1Q13428 1488 aaKnown RBP24.26■■□□□ 1.47
USB1-201ENST00000219281 RRP7BPQ9NSQ0 103 aa24.26■■□□□ 1.47
USB1-201ENST00000219281 RAPGEF6Q8TEU7 1601 aa24.26■■□□□ 1.47
USB1-201ENST00000219281 CHIC2Q9UKJ5 165 aa24.24■■□□□ 1.47
USB1-201ENST00000219281 NEFLP07196 543 aa24.23■■□□□ 1.47
USB1-201ENST00000219281 PLB1Q6P1J6 1458 aa24.23■■□□□ 1.47
USB1-201ENST00000219281 KDM5BQ9UGL1 1544 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms