RNA–Protein interactions for RNA: ENST00000219281.7

USB1-201, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USB1, Length 2,282 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-201ENST00000219281 NISCHQ9Y2I1 1504 aa36.14■■■■□ 3.38
USB1-201ENST00000219281 CCDC180Q9P1Z9 1646 aa31■■■□□ 2.55
USB1-201ENST00000219281 ZCCHC6Q5VYS8 1495 aaKnown RBP30.45■■■□□ 2.47
USB1-201ENST00000219281 SHROOM4Q9ULL8 1493 aa30.28■■■□□ 2.44
USB1-201ENST00000219281 DCAF8L2P0C7V8 631 aa29.94■■■□□ 2.38
USB1-201ENST00000219281 SUPT5HO00267 1087 aaKnown RBP29.8■■■□□ 2.36
USB1-201ENST00000219281 DCAF1Q9Y4B6 1507 aa29.74■■■□□ 2.35
USB1-201ENST00000219281 MYO15BQ96JP2 1530 aa29.13■■■□□ 2.25
USB1-201ENST00000219281 ABCC9O60706 1549 aa29.11■■■□□ 2.25
USB1-201ENST00000219281 CHIC1Q5VXU3 224 aa29.05■■■□□ 2.24
USB1-201ENST00000219281 SCRIBQ14160 1630 aa28.84■■■□□ 2.21
USB1-201ENST00000219281 NACADO15069 1562 aa28.82■■■□□ 2.2
USB1-201ENST00000219281 HRCP23327 699 aa28.5■■■□□ 2.15
USB1-201ENST00000219281 RB1CC1Q8TDY2 1594 aa28.43■■■□□ 2.14
USB1-201ENST00000219281 PCGF6Q9BYE7 350 aa28.38■■■□□ 2.13
USB1-201ENST00000219281 RSF1Q96T23 1441 aaPredicted RBP28.37■■■□□ 2.13
USB1-201ENST00000219281 LOC105371045A0A1W2PR82 267 aa28.23■■■□□ 2.11
USB1-201ENST00000219281 CECR2Q9BXF3 1484 aa28.19■■■□□ 2.1
USB1-201ENST00000219281 MROH2BQ7Z745 1585 aa28.03■■■□□ 2.08
USB1-201ENST00000219281 UNC13AQ9UPW8 1703 aa27.95■■■□□ 2.07
USB1-201ENST00000219281 PPARGC1BQ86YN6 1023 aaKnown RBP27.9■■■□□ 2.06
USB1-201ENST00000219281 WIZO95785 1651 aa27.81■■■□□ 2.04
USB1-201ENST00000219281 BAZ1AQ9NRL2 1556 aaPredicted RBP27.78■■■□□ 2.04
USB1-201ENST00000219281 TRIM26Q12899 539 aaPredicted RBP27.77■■■□□ 2.04
USB1-201ENST00000219281 TRIM41Q8WV44 630 aa27.72■■■□□ 2.03
USB1-201ENST00000219281 PABPN1Q86U42 306 aaKnown RBP eCLIP27.72■■■□□ 2.03
USB1-201ENST00000219281 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
USB1-201ENST00000219281 SMARCA4P51532 1647 aa27.61■■■□□ 2.01
USB1-201ENST00000219281 FAM9AQ8IZU1 332 aaPredicted RBP27.54■■■□□ 2
USB1-201ENST00000219281 TOP2AP11388 1531 aaKnown RBP27.41■■□□□ 1.98
USB1-201ENST00000219281 EHMT2Q96KQ7 1210 aa27.33■■□□□ 1.97
USB1-201ENST00000219281 CCDC88BA6NC98 1476 aa27.29■■□□□ 1.96
USB1-201ENST00000219281 SMARCA2P51531 1590 aa27.24■■□□□ 1.95
USB1-201ENST00000219281 EIF4G1Q04637 1599 aaKnown RBP27.24■■□□□ 1.95
USB1-201ENST00000219281 ZEB1P37275 1124 aaPredicted RBP27.24■■□□□ 1.95
USB1-201ENST00000219281 PEG3Q9GZU2 1588 aa27.19■■□□□ 1.94
USB1-201ENST00000219281 ATAD2BQ9ULI0 1458 aa27.08■■□□□ 1.93
USB1-201ENST00000219281 ABCC8Q09428 1581 aa26.95■■□□□ 1.9
USB1-201ENST00000219281 BAZ1BQ9UIG0 1483 aaKnown RBP26.91■■□□□ 1.9
USB1-201ENST00000219281 NCAPD3P42695 1498 aa26.7■■□□□ 1.87
USB1-201ENST00000219281 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.64■■□□□ 1.86
USB1-201ENST00000219281 WRNQ14191 1432 aaPredicted RBP eCLIP26.63■■□□□ 1.85
USB1-201ENST00000219281 SOGA1O94964 1423 aa26.62■■□□□ 1.85
USB1-201ENST00000219281 HMGXB3Q12766 1538 aa26.61■■□□□ 1.85
USB1-201ENST00000219281 CCER1Q8TC90 406 aaPredicted RBP26.58■■□□□ 1.85
USB1-201ENST00000219281 CEP162Q5TB80 1403 aa26.54■■□□□ 1.84
USB1-201ENST00000219281 RUSC2Q8N2Y8 1516 aa26.53■■□□□ 1.84
USB1-201ENST00000219281 SYNJ1O43426 1573 aa26.5■■□□□ 1.83
USB1-201ENST00000219281 TTBK1Q5TCY1 1321 aaPredicted RBP26.49■■□□□ 1.83
USB1-201ENST00000219281 TNIKQ9UKE5 1360 aa26.48■■□□□ 1.83
USB1-201ENST00000219281 CSRNP3Q8WYN3 585 aa26.46■■□□□ 1.83
USB1-201ENST00000219281 EEA1Q15075 1411 aa26.44■■□□□ 1.82
USB1-201ENST00000219281 UBTFP17480 764 aaKnown RBP26.4■■□□□ 1.82
USB1-201ENST00000219281 SCAF1Q9H7N4 1312 aaKnown RBP26.38■■□□□ 1.81
USB1-201ENST00000219281 CFTRP13569 1480 aa26.3■■□□□ 1.8
USB1-201ENST00000219281 GOLGA3Q08378 1498 aa26.29■■□□□ 1.8
USB1-201ENST00000219281 TOP2BQ02880 1626 aa26.26■■□□□ 1.79
USB1-201ENST00000219281 CC2D2AQ9P2K1 1620 aa26.26■■□□□ 1.79
USB1-201ENST00000219281 BIVM-ERCC5R4GMW8 1640 aa26.17■■□□□ 1.78
USB1-201ENST00000219281 DIEXFQ68CQ4 756 aaKnown RBP26.17■■□□□ 1.78
USB1-201ENST00000219281 CUX1P39880 1505 aa26.13■■□□□ 1.77
USB1-201ENST00000219281 CADPSQ9ULU8 1353 aa26.11■■□□□ 1.77
USB1-201ENST00000219281 CEP164Q9UPV0 1460 aa26.11■■□□□ 1.77
USB1-201ENST00000219281 ACIN1Q9UKV3 1341 aaKnown RBP26.07■■□□□ 1.76
USB1-201ENST00000219281 KIF21BO75037 1637 aa26.07■■□□□ 1.76
USB1-201ENST00000219281 NEUROD1Q13562 356 aa26.03■■□□□ 1.76
USB1-201ENST00000219281 PELP1Q8IZL8 1130 aaKnown RBP26.02■■□□□ 1.76
USB1-201ENST00000219281 CLIP1P30622 1438 aa26.01■■□□□ 1.75
USB1-201ENST00000219281 RAPGEF2Q9Y4G8 1499 aa26■■□□□ 1.75
USB1-201ENST00000219281 PRDM2Q13029 1718 aa25.97■■□□□ 1.75
USB1-201ENST00000219281 HNRNPUL2Q1KMD3 747 aaKnown RBP25.94■■□□□ 1.74
USB1-201ENST00000219281 ZNF316A6NFI3 1004 aaPredicted RBP25.92■■□□□ 1.74
USB1-201ENST00000219281 VPS8Q8N3P4 1428 aa25.91■■□□□ 1.74
USB1-201ENST00000219281 CENPBP07199 599 aaPredicted RBP25.89■■□□□ 1.74
USB1-201ENST00000219281 PRXQ9BXM0 1461 aa25.88■■□□□ 1.73
USB1-201ENST00000219281 KIF27Q86VH2 1401 aa25.86■■□□□ 1.73
USB1-201ENST00000219281 RANGAP1P46060 587 aaPredicted RBP25.85■■□□□ 1.73
USB1-201ENST00000219281 APLP2Q06481 763 aa25.84■■□□□ 1.73
USB1-201ENST00000219281 FANCD2Q9BXW9 1451 aa25.81■■□□□ 1.72
USB1-201ENST00000219281 GTF3C3Q9Y5Q9 886 aa25.79■■□□□ 1.72
USB1-201ENST00000219281 DNAJC5BQ9UF47 199 aa25.79■■□□□ 1.72
USB1-201ENST00000219281 NESP48681 1621 aa25.79■■□□□ 1.72
USB1-201ENST00000219281 ERICH3Q5RHP9 1530 aa25.78■■□□□ 1.72
USB1-201ENST00000219281 FGD5Q6ZNL6 1462 aa25.74■■□□□ 1.71
USB1-201ENST00000219281 CUX2O14529 1486 aa25.71■■□□□ 1.71
USB1-201ENST00000219281 IGF1RP08069 1367 aa25.69■■□□□ 1.7
USB1-201ENST00000219281 LAMC3Q9Y6N6 1575 aa25.6■■□□□ 1.69
USB1-201ENST00000219281 DNMBPQ6XZF7 1577 aa25.59■■□□□ 1.69
USB1-201ENST00000219281 TOPBP1Q92547 1522 aa25.59■■□□□ 1.69
USB1-201ENST00000219281 MIER1Q8N108 512 aa25.58■■□□□ 1.69
USB1-201ENST00000219281 YTHDC1Q96MU7 727 aaKnown RBP25.58■■□□□ 1.69
USB1-201ENST00000219281 ARAP1Q96P48 1450 aa25.56■■□□□ 1.68
USB1-201ENST00000219281 RAD54L2Q9Y4B4 1467 aa25.55■■□□□ 1.68
USB1-201ENST00000219281 POLA1P09884 1462 aaPredicted RBP25.54■■□□□ 1.68
USB1-201ENST00000219281 CARMIL1Q5VZK9 1371 aa25.53■■□□□ 1.68
USB1-201ENST00000219281 KANK4Q5T7N3 995 aaPredicted RBP25.49■■□□□ 1.67
USB1-201ENST00000219281 URB2Q14146 1524 aaKnown RBP25.48■■□□□ 1.67
USB1-201ENST00000219281 ABCA10Q8WWZ4 1543 aa25.48■■□□□ 1.67
USB1-201ENST00000219281 PDS5BQ9NTI5 1447 aa25.45■■□□□ 1.66
USB1-201ENST00000219281 DHX57Q6P158 1386 aaKnown RBP25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms