RNA–Protein interactions for RNA: ENST00000217315.9

TM9SF4-201, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2 BASIC

Gene TM9SF4, Length 4,032 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-201ENST00000217315 KIF21BO75037 1637 aa17.24■□□□□ 0.35
TM9SF4-201ENST00000217315 EIF4G1Q04637 1599 aaKnown RBP17.24■□□□□ 0.35
TM9SF4-201ENST00000217315 RAB3GAP2Q9H2M9 1393 aa17.23■□□□□ 0.35
TM9SF4-201ENST00000217315 UNC13AQ9UPW8 1703 aa17.23■□□□□ 0.35
TM9SF4-201ENST00000217315 IGF1RP08069 1367 aa17.22■□□□□ 0.35
TM9SF4-201ENST00000217315 DHX57Q6P158 1386 aaKnown RBP17.21■□□□□ 0.35
TM9SF4-201ENST00000217315 FKBP8Q14318 412 aa17.2■□□□□ 0.34
TM9SF4-201ENST00000217315 SETD5Q9C0A6 1442 aa17.19■□□□□ 0.34
TM9SF4-201ENST00000217315 FHOD3Q2V2M9 1422 aa17.18■□□□□ 0.34
TM9SF4-201ENST00000217315 CHMP7Q8WUX9 453 aaPredicted RBP17.18■□□□□ 0.34
TM9SF4-201ENST00000217315 MYT1Q01538 1121 aa17.17■□□□□ 0.34
TM9SF4-201ENST00000217315 HNRNPUQ00839 825 aaKnown RBP eCLIP17.15■□□□□ 0.34
TM9SF4-201ENST00000217315 FANCD2Q9BXW9 1451 aa17.15■□□□□ 0.34
TM9SF4-201ENST00000217315 ARAP1Q96P48 1450 aa17.14■□□□□ 0.33
TM9SF4-201ENST00000217315 FGD5Q6ZNL6 1462 aa17.14■□□□□ 0.33
TM9SF4-201ENST00000217315 CFTRP13569 1480 aa17.14■□□□□ 0.33
TM9SF4-201ENST00000217315 TOP2BQ02880 1626 aa17.13■□□□□ 0.33
TM9SF4-201ENST00000217315 PRXQ9BXM0 1461 aa17.13■□□□□ 0.33
TM9SF4-201ENST00000217315 ARHGAP35Q9NRY4 1499 aa17.12■□□□□ 0.33
TM9SF4-201ENST00000217315 SLC4A1APQ9BWU0 796 aaKnown RBP17.11■□□□□ 0.33
TM9SF4-201ENST00000217315 CUX1P39880 1505 aa17.1■□□□□ 0.33
TM9SF4-201ENST00000217315 PEG3Q9GZU2 1588 aa17.09■□□□□ 0.33
TM9SF4-201ENST00000217315 FAM9BQ8IZU0 186 aa17.08■□□□□ 0.32
TM9SF4-201ENST00000217315 RAD54L2Q9Y4B4 1467 aa17.08■□□□□ 0.32
TM9SF4-201ENST00000217315 EIF4G2P78344 907 aaKnown RBP eCLIP17.07■□□□□ 0.322e-10■■■■□ 24
TM9SF4-201ENST00000217315 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
TM9SF4-201ENST00000217315 ERICH3Q5RHP9 1530 aa17.06■□□□□ 0.32
TM9SF4-201ENST00000217315 FMN1Q68DA7 1419 aa17.06■□□□□ 0.32
TM9SF4-201ENST00000217315 HMGXB3Q12766 1538 aa17.04■□□□□ 0.32
TM9SF4-201ENST00000217315 CFDP1Q9UEE9 299 aaPredicted RBP17.03■□□□□ 0.32
TM9SF4-201ENST00000217315 TIMELESSQ9UNS1 1208 aa17.03■□□□□ 0.32
TM9SF4-201ENST00000217315 TSPY4P0CV99 314 aa17.02■□□□□ 0.31
TM9SF4-201ENST00000217315 TSPY10P0CW01 314 aa17.02■□□□□ 0.31
TM9SF4-201ENST00000217315 KDM2AQ9Y2K7 1162 aa17■□□□□ 0.31
TM9SF4-201ENST00000217315 PHLDB1Q86UU1 1377 aa16.99■□□□□ 0.31
TM9SF4-201ENST00000217315 PPP1R15AO75807 674 aaPredicted RBP16.99■□□□□ 0.31
TM9SF4-201ENST00000217315 MRS2Q9HD23 443 aa16.99■□□□□ 0.31
TM9SF4-201ENST00000217315 PLEKHD1A6NEE1 506 aa16.98■□□□□ 0.31
TM9SF4-201ENST00000217315 FOXD1Q16676 465 aa16.98■□□□□ 0.31
TM9SF4-201ENST00000217315 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.97■□□□□ 0.312e-7■□□□□ 9
TM9SF4-201ENST00000217315 IRX6P78412 446 aaPredicted RBP16.96■□□□□ 0.31
TM9SF4-201ENST00000217315 SUPT16HQ9Y5B9 1047 aaKnown RBP16.96■□□□□ 0.31
TM9SF4-201ENST00000217315 KCNH8Q96L42 1107 aa16.95■□□□□ 0.3
TM9SF4-201ENST00000217315 NESP48681 1621 aa16.94■□□□□ 0.3
TM9SF4-201ENST00000217315 RRBP1Q9P2E9 1410 aaKnown RBP16.93■□□□□ 0.3
TM9SF4-201ENST00000217315 LRRC9Q6ZRR7 1453 aa16.92■□□□□ 0.3
TM9SF4-201ENST00000217315 ERCC6Q03468 1493 aa16.91■□□□□ 0.3
TM9SF4-201ENST00000217315 GAPVD1Q14C86 1478 aa16.87■□□□□ 0.29
TM9SF4-201ENST00000217315 SENP3-EIF4A1A0A087X0R7 540 aa16.87■□□□□ 0.29
TM9SF4-201ENST00000217315 MPHOSPH9Q99550 1183 aa16.87■□□□□ 0.29
TM9SF4-201ENST00000217315 HSPA5P11021 654 aaKnown RBP16.87■□□□□ 0.29
TM9SF4-201ENST00000217315 SALL2Q9Y467 1007 aaPredicted RBP16.86■□□□□ 0.29
TM9SF4-201ENST00000217315 CC2D2AQ9P2K1 1620 aa16.86■□□□□ 0.29
TM9SF4-201ENST00000217315 TMC1Q8TDI8 760 aa16.86■□□□□ 0.29
TM9SF4-201ENST00000217315 RGL3Q3MIN7 710 aa16.84■□□□□ 0.29
TM9SF4-201ENST00000217315 POLA1P09884 1462 aaPredicted RBP16.83■□□□□ 0.28
TM9SF4-201ENST00000217315 CCER2I3L3R5 266 aa16.82■□□□□ 0.28
TM9SF4-201ENST00000217315 FGD6Q6ZV73 1430 aa16.81■□□□□ 0.28
TM9SF4-201ENST00000217315 TOPBP1Q92547 1522 aa16.81■□□□□ 0.28
TM9SF4-201ENST00000217315 L3MBTL2Q969R5 705 aa16.81■□□□□ 0.28
TM9SF4-201ENST00000217315 DNAJC5BQ9UF47 199 aa16.8■□□□□ 0.28
TM9SF4-201ENST00000217315 BIVM-ERCC5R4GMW8 1640 aa16.8■□□□□ 0.28
TM9SF4-201ENST00000217315 CASKIN1Q8WXD9 1431 aa16.79■□□□□ 0.28
TM9SF4-201ENST00000217315 CCDC18Q5T9S5 1454 aa16.79■□□□□ 0.28
TM9SF4-201ENST00000217315 CARD11Q9BXL7 1154 aa16.77■□□□□ 0.28
TM9SF4-201ENST00000217315 TIAM1Q13009 1591 aa16.77■□□□□ 0.27
TM9SF4-201ENST00000217315 AQRO60306 1485 aaKnown RBP eCLIP16.76■□□□□ 0.275e-7■■■■□ 23.8
TM9SF4-201ENST00000217315 PKD2Q13563 968 aa16.76■□□□□ 0.27
TM9SF4-201ENST00000217315 MYOM3Q5VTT5 1437 aa16.73■□□□□ 0.27
TM9SF4-201ENST00000217315 FYCO1Q9BQS8 1478 aa16.72■□□□□ 0.27
TM9SF4-201ENST00000217315 JPH4Q96JJ6 628 aa16.71■□□□□ 0.27
TM9SF4-201ENST00000217315 ZNF644Q9H582 1327 aaPredicted RBP16.7■□□□□ 0.26
TM9SF4-201ENST00000217315 NCOA2Q15596 1464 aa16.7■□□□□ 0.26
TM9SF4-201ENST00000217315 CHGAP10645 457 aaKnown RBP16.7■□□□□ 0.26
TM9SF4-201ENST00000217315 DCAF11Q8TEB1 546 aa16.7■□□□□ 0.26
TM9SF4-201ENST00000217315 DNMBPQ6XZF7 1577 aa16.69■□□□□ 0.26
TM9SF4-201ENST00000217315 CARMIL2Q6F5E8 1435 aa16.69■□□□□ 0.26
TM9SF4-201ENST00000217315 DAXXQ9UER7 740 aaPredicted RBP16.68■□□□□ 0.26
TM9SF4-201ENST00000217315 CCDC136Q96JN2 1154 aa16.67■□□□□ 0.26
TM9SF4-201ENST00000217315 ABCA10Q8WWZ4 1543 aa16.67■□□□□ 0.26
TM9SF4-201ENST00000217315 UACAQ9BZF9 1416 aa16.67■□□□□ 0.26
TM9SF4-201ENST00000217315 EFCAB5A4FU69 1503 aa16.65■□□□□ 0.26
TM9SF4-201ENST00000217315 NUP155O75694 1391 aa16.65■□□□□ 0.26
TM9SF4-201ENST00000217315 HNRNPMP52272 730 aaKnown RBP eCLIP16.63■□□□□ 0.253e-7■■■□□ 15.8
TM9SF4-201ENST00000217315 PCF11O94913 1555 aaKnown RBP16.63■□□□□ 0.25
TM9SF4-201ENST00000217315 ANKRD30AQ9BXX3 1397 aa16.62■□□□□ 0.25
TM9SF4-201ENST00000217315 NPM1P06748 294 aaKnown RBP eCLIP16.59■□□□□ 0.25
TM9SF4-201ENST00000217315 WDR97A6NE52 1622 aa16.58■□□□□ 0.25
TM9SF4-201ENST00000217315 TSHZ2Q9NRE2 1034 aa16.58■□□□□ 0.24
TM9SF4-201ENST00000217315 RTL5Q5HYW3 569 aaPredicted RBP16.57■□□□□ 0.24
TM9SF4-201ENST00000217315 NPM2Q86SE8 214 aaKnown RBP16.57■□□□□ 0.24
TM9SF4-201ENST00000217315 B4GALNT3Q6L9W6 998 aa16.57■□□□□ 0.24
TM9SF4-201ENST00000217315 MAP3K1Q13233 1512 aa16.57■□□□□ 0.24
TM9SF4-201ENST00000217315 HFM1A2PYH4 1435 aa16.56■□□□□ 0.24
TM9SF4-201ENST00000217315 GRIN2BQ13224 1484 aa16.55■□□□□ 0.24
TM9SF4-201ENST00000217315 ANP32AP39687 249 aaKnown RBP16.55■□□□□ 0.24
TM9SF4-201ENST00000217315 PPP4R2Q9NY27 417 aa16.54■□□□□ 0.24
TM9SF4-201ENST00000217315 URB2Q14146 1524 aaKnown RBP16.54■□□□□ 0.24
TM9SF4-201ENST00000217315 WDR43Q15061 677 aaKnown RBP eCLIP16.53■□□□□ 0.24
TM9SF4-201ENST00000217315 PRKRIP1Q9H875 184 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms