RNA–Protein interactions for RNA: ENSMUST00000113706.9

Trim39-203, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,204 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-203ENSMUST00000113706 Ap3b1Q9Z1T1 1105 aa24.16■■□□□ 1.46
Trim39-203ENSMUST00000113706 Plb1Q3TTY0 1478 aa24.16■■□□□ 1.46
Trim39-203ENSMUST00000113706 Pcf11G3X9Z4 1553 aa24.14■■□□□ 1.46
Trim39-203ENSMUST00000113706 Lmo7E9PYF4 1699 aaKnown RBP24.13■■□□□ 1.45
Trim39-203ENSMUST00000113706 Urb2E9Q7L1 1524 aaKnown RBP24.13■■□□□ 1.45
Trim39-203ENSMUST00000113706 Tiam1Q60610 1591 aa24.12■■□□□ 1.45
Trim39-203ENSMUST00000113706 Pcgf6Q99NA9 353 aa24.11■■□□□ 1.45
Trim39-203ENSMUST00000113706 Pla2r1Q62028 1487 aa24.09■■□□□ 1.45
Trim39-203ENSMUST00000113706 Magi3Q9EQJ9 1476 aa24.09■■□□□ 1.45
Trim39-203ENSMUST00000113706 Polr1aO35134 1717 aaKnown RBP24.08■■□□□ 1.45
Trim39-203ENSMUST00000113706 Fyco1Q8VDC1 1437 aa24.04■■□□□ 1.44
Trim39-203ENSMUST00000113706 Disp1Q3TDN0 1521 aa24.03■■□□□ 1.44
Trim39-203ENSMUST00000113706 Grin2aP35436 1464 aa24.03■■□□□ 1.44
Trim39-203ENSMUST00000113706 Naip1Q9QWK5 1403 aa24.02■■□□□ 1.44
Trim39-203ENSMUST00000113706 NefmP08553 848 aa24.02■■□□□ 1.44
Trim39-203ENSMUST00000113706 Lrriq1Q0P5X1 1673 aa24.01■■□□□ 1.43
Trim39-203ENSMUST00000113706 Slx4Q6P1D7 1565 aa24.01■■□□□ 1.43
Trim39-203ENSMUST00000113706 Setd1bQ8CFT2 1985 aa24■■□□□ 1.43
Trim39-203ENSMUST00000113706 EprsQ8CGC7 1512 aaKnown RBP24■■□□□ 1.43
Trim39-203ENSMUST00000113706 Rpap1Q80TE0 1409 aa23.97■■□□□ 1.43
Trim39-203ENSMUST00000113706 Ncapd3Q6ZQK0 1506 aa23.96■■□□□ 1.43
Trim39-203ENSMUST00000113706 Ift140E9PY46 1464 aa23.95■■□□□ 1.42
Trim39-203ENSMUST00000113706 CntlnA2AM05 1397 aa23.92■■□□□ 1.42
Trim39-203ENSMUST00000113706 Pbrm1Q8BSQ9 1634 aaKnown RBP23.91■■□□□ 1.42
Trim39-203ENSMUST00000113706 BlmO88700 1416 aa23.91■■□□□ 1.42
Trim39-203ENSMUST00000113706 Peg3Q3URU2 1571 aa23.9■■□□□ 1.42
Trim39-203ENSMUST00000113706 Gpatch8A2A6A1 1505 aa23.9■■□□□ 1.42
Trim39-203ENSMUST00000113706 Abca5Q8K448 1642 aa23.89■■□□□ 1.42
Trim39-203ENSMUST00000113706 Supt5hO55201 1082 aaKnown RBP23.89■■□□□ 1.41
Trim39-203ENSMUST00000113706 Adamts12Q811B3 1600 aa23.89■■□□□ 1.41
Trim39-203ENSMUST00000113706 WizO88286 1684 aaKnown RBP23.88■■□□□ 1.41
Trim39-203ENSMUST00000113706 Nup160Q9Z0W3 1402 aaKnown RBP23.87■■□□□ 1.41
Trim39-203ENSMUST00000113706 CadpsQ80TJ1 1355 aa23.87■■□□□ 1.41
Trim39-203ENSMUST00000113706 Aebp1Q640N1 1128 aa23.85■■□□□ 1.41
Trim39-203ENSMUST00000113706 Gm7298A0A0N4SVU1 1476 aa23.84■■□□□ 1.41
Trim39-203ENSMUST00000113706 Abca16E9PWJ7 1678 aa23.79■■□□□ 1.4
Trim39-203ENSMUST00000113706 TchhA0A0B4J1F9 1599 aa23.78■■□□□ 1.4
Trim39-203ENSMUST00000113706 PxdnQ3UQ28 1475 aa23.77■■□□□ 1.4
Trim39-203ENSMUST00000113706 Lmod2Q3UHZ5 550 aa23.76■■□□□ 1.39
Trim39-203ENSMUST00000113706 Gm1043A0A140LJC2 1431 aa23.76■■□□□ 1.39
Trim39-203ENSMUST00000113706 Soga1E1U8D0 1418 aa23.73■■□□□ 1.39
Trim39-203ENSMUST00000113706 Cc2d2bA0A286YDU8 1405 aa23.7■■□□□ 1.39
Trim39-203ENSMUST00000113706 Kdm5bQ80Y84 1544 aa23.65■■□□□ 1.38
Trim39-203ENSMUST00000113706 Rusc2Q80U22 1514 aa23.64■■□□□ 1.38
Trim39-203ENSMUST00000113706 Eif4g3Q80XI3 1579 aaKnown RBP23.63■■□□□ 1.37
Trim39-203ENSMUST00000113706 Abcc2Q8VI47 1543 aa23.62■■□□□ 1.37
Trim39-203ENSMUST00000113706 Kif27Q7M6Z4 1394 aa23.62■■□□□ 1.37
Trim39-203ENSMUST00000113706 3425401B19RikD3Z1D3 1412 aa23.62■■□□□ 1.37
Trim39-203ENSMUST00000113706 WrnO09053 1401 aa23.56■■□□□ 1.36
Trim39-203ENSMUST00000113706 Arhgap27A2AB59 869 aa23.54■■□□□ 1.36
Trim39-203ENSMUST00000113706 Lmtk2Q3TYD6 1471 aa23.53■■□□□ 1.36
Trim39-203ENSMUST00000113706 Shroom2A2ALU4 1481 aa23.52■■□□□ 1.36
Trim39-203ENSMUST00000113706 BC005561E9Q5E2 1589 aa23.51■■□□□ 1.35
Trim39-203ENSMUST00000113706 NexmifQ5DTT1 1515 aa23.48■■□□□ 1.35
Trim39-203ENSMUST00000113706 Rapgef6Q5NCJ1 1609 aa23.48■■□□□ 1.35
Trim39-203ENSMUST00000113706 Ccnb3Q810T2 1396 aa23.47■■□□□ 1.35
Trim39-203ENSMUST00000113706 Gcc2Q8CHG3 1679 aa23.47■■□□□ 1.35
Trim39-203ENSMUST00000113706 Fam50aQ9WV03 339 aaKnown RBP23.44■■□□□ 1.34
Trim39-203ENSMUST00000113706 Sall2Q9QX96 1004 aa23.44■■□□□ 1.34
Trim39-203ENSMUST00000113706 Map3k4O08648 1597 aa23.44■■□□□ 1.34
Trim39-203ENSMUST00000113706 Dnmt1P13864 1620 aaKnown RBP23.41■■□□□ 1.34
Trim39-203ENSMUST00000113706 A2mQ6GQT1 1474 aa23.4■■□□□ 1.34
Trim39-203ENSMUST00000113706 Mug1P28665 1476 aa23.38■■□□□ 1.33
Trim39-203ENSMUST00000113706 Naip2Q9QUK4 1447 aa23.38■■□□□ 1.33
Trim39-203ENSMUST00000113706 Ncoa3O09000 1398 aa23.37■■□□□ 1.33
Trim39-203ENSMUST00000113706 Arhgef11Q68FM7 1552 aa23.37■■□□□ 1.33
Trim39-203ENSMUST00000113706 Las1lA2BE28 776 aaKnown RBP23.37■■□□□ 1.33
Trim39-203ENSMUST00000113706 TonslQ6NZL6 1363 aa23.36■■□□□ 1.33
Trim39-203ENSMUST00000113706 Zcchc11B2RX14 1644 aaKnown RBP23.36■■□□□ 1.33
Trim39-203ENSMUST00000113706 Fhad1A6PWD2 1420 aa23.36■■□□□ 1.33
Trim39-203ENSMUST00000113706 Mia2Q91ZV0 1396 aa23.34■■□□□ 1.33
Trim39-203ENSMUST00000113706 Arhgap31A6X8Z5 1425 aa23.33■■□□□ 1.33
Trim39-203ENSMUST00000113706 Aebp2Q9Z248 504 aaKnown RBP23.33■■□□□ 1.32
Trim39-203ENSMUST00000113706 Cdc42bpaQ3UU96 1719 aa23.32■■□□□ 1.32
Trim39-203ENSMUST00000113706 Vps8Q0P5W1 1427 aa23.31■■□□□ 1.32
Trim39-203ENSMUST00000113706 Neo1P97798 1493 aa23.3■■□□□ 1.32
Trim39-203ENSMUST00000113706 Eid3Q3V124 375 aa23.29■■□□□ 1.32
Trim39-203ENSMUST00000113706 Ccdc141E9Q8Q6 1531 aa23.27■■□□□ 1.32
Trim39-203ENSMUST00000113706 Mroh2aD3Z750 1679 aa23.27■■□□□ 1.32
Trim39-203ENSMUST00000113706 Kiaa1551Q5DTW7 1521 aa23.26■■□□□ 1.31
Trim39-203ENSMUST00000113706 Fgd6Q69ZL1 1399 aa23.26■■□□□ 1.31
Trim39-203ENSMUST00000113706 Ncoa2Q61026 1462 aa23.26■■□□□ 1.31
Trim39-203ENSMUST00000113706 AknaQ80VW7 1404 aa23.24■■□□□ 1.31
Trim39-203ENSMUST00000113706 Arhgef12Q8R4H2 1543 aaKnown RBP23.23■■□□□ 1.31
Trim39-203ENSMUST00000113706 Magi1Q6RHR9 1471 aa23.21■■□□□ 1.31
Trim39-203ENSMUST00000113706 Arhgef40Q3UPH7 1517 aa23.2■■□□□ 1.31
Trim39-203ENSMUST00000113706 Rrbp1Q99PL5 1605 aaKnown RBP23.2■■□□□ 1.3
Trim39-203ENSMUST00000113706 UacaQ8CGB3 1411 aa23.19■■□□□ 1.3
Trim39-203ENSMUST00000113706 Chic2Q9D9G3 165 aa23.19■■□□□ 1.3
Trim39-203ENSMUST00000113706 Adcy10Q8C0T9 1614 aa23.18■■□□□ 1.3
Trim39-203ENSMUST00000113706 Dennd4bQ3U1Y4 1499 aa23.18■■□□□ 1.3
Trim39-203ENSMUST00000113706 Jph4Q80WT0 628 aa23.18■■□□□ 1.3
Trim39-203ENSMUST00000113706 Prex2Q3LAC4 1598 aa23.17■■□□□ 1.3
Trim39-203ENSMUST00000113706 Wdr66E9Q743 1299 aa23.17■■□□□ 1.3
Trim39-203ENSMUST00000113706 Kdm6bQ5NCY0 1641 aa23.16■■□□□ 1.3
Trim39-203ENSMUST00000113706 Dhx57Q6P5D3 1388 aaKnown RBP23.16■■□□□ 1.3
Trim39-203ENSMUST00000113706 Mapkbp1Q6NS57 1503 aa23.15■■□□□ 1.3
Trim39-203ENSMUST00000113706 Ccer2J3QPU5 274 aa23.14■■□□□ 1.29
Trim39-203ENSMUST00000113706 Abcc5Q9R1X5 1436 aa23.13■■□□□ 1.29
Trim39-203ENSMUST00000113706 ClspnQ80YR7 1315 aa23.12■■□□□ 1.29
Retrieved 100 of 22,080 RNA–protein pairs in 13.8 ms