RNA–Protein interactions for RNA: YER049W

TPA1, Transcript of Poly(rA)-binding protein, yeast

Gene TPA1, Length 1,935 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPA1	YER049W	PIF1	P07271	859 aa		4.58	□□□□□ -1.68
TPA1	YER049W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
TPA1	YER049W	MCM3	P24279	971 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	URA1	P28272	314 aa	Predicted RBP	4.58	□□□□□ -1.68
TPA1	YER049W	YEL043W	P32618	956 aa		4.58	□□□□□ -1.68
TPA1	YER049W	YKL133C	P36066	463 aa		4.58	□□□□□ -1.68
TPA1	YER049W	GLY1	P37303	387 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	ADE17	P38009	592 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	MED8	P38304	223 aa		4.58	□□□□□ -1.68
TPA1	YER049W	RTT107	P38850	1070 aa		4.58	□□□□□ -1.68
TPA1	YER049W	YMR147W	P40218	223 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	OSW7	P43611	510 aa		4.58	□□□□□ -1.68
TPA1	YER049W	APT1	P49435	187 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	YGL140C	P53120	1219 aa		4.58	□□□□□ -1.68
TPA1	YER049W	CAF130	P53280	1122 aa	Predicted RBP	4.58	□□□□□ -1.68
TPA1	YER049W	PIN2	Q12057	282 aa		4.58	□□□□□ -1.68
TPA1	YER049W	SEC23	P15303	768 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	IDI1	P15496	288 aa		4.58	□□□□□ -1.68
TPA1	YER049W	BMH1	P29311	267 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	MCM5	P29496	775 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	BMH2	P34730	273 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	RER2	P35196	286 aa		4.58	□□□□□ -1.68
TPA1	YER049W	RPN10	P38886	268 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	CAJ1	P39101	391 aa		4.58	□□□□□ -1.68
TPA1	YER049W	ECM1	P39715	212 aa		4.58	□□□□□ -1.68
TPA1	YER049W	YER156C	P40093	338 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	CTK3	P46963	296 aa	Predicted RBP	4.58	□□□□□ -1.68
TPA1	YER049W	MON1	P53129	644 aa		4.58	□□□□□ -1.68
TPA1	YER049W	ALD6	P54115	500 aa	Known RBP	4.58	□□□□□ -1.68
TPA1	YER049W	GYL1	Q04322	720 aa		4.58	□□□□□ -1.68
TPA1	YER049W	VPS38	Q05919	439 aa		4.58	□□□□□ -1.68
TPA1	YER049W	EST2	Q06163	884 aa		4.58	□□□□□ -1.68
TPA1	YER049W	POM152	P39685	1337 aa		4.58	□□□□□ -1.68
TPA1	YER049W	RPO26	P20435	155 aa		4.57	□□□□□ -1.68
TPA1	YER049W	SWI4	P25302	1093 aa	Known RBP	4.57	□□□□□ -1.68
TPA1	YER049W	MUD2	P36084	527 aa	Known RBP	4.57	□□□□□ -1.68
TPA1	YER049W	CCT4	P39078	528 aa	Known RBP	4.57	□□□□□ -1.68
TPA1	YER049W	BUD16	P39988	312 aa		4.57	□□□□□ -1.68
TPA1	YER049W	BOP3	P53958	396 aa		4.57	□□□□□ -1.68
TPA1	YER049W	YPL109C	Q02981	657 aa		4.57	□□□□□ -1.68
TPA1	YER049W	YMR102C	Q03177	834 aa		4.57	□□□□□ -1.68
TPA1	YER049W	RBA50	Q04418	439 aa		4.57	□□□□□ -1.68
TPA1	YER049W	GFD1	Q04839	188 aa	Known RBP	4.57	□□□□□ -1.68
TPA1	YER049W	HCR1	Q05775	265 aa	Known RBP	4.57	□□□□□ -1.68
TPA1	YER049W	PPM2	Q08282	695 aa		4.57	□□□□□ -1.68
TPA1	YER049W	CDC6	P09119	513 aa		4.56	□□□□□ -1.68
TPA1	YER049W	PRE9	P23638	258 aa	Known RBP	4.56	□□□□□ -1.68
TPA1	YER049W	PET112	P33893	541 aa		4.56	□□□□□ -1.68
TPA1	YER049W	STO1	P34160	861 aa	Known RBP	4.56	□□□□□ -1.68
TPA1	YER049W	SAP190	P36123	1033 aa		4.56	□□□□□ -1.68
TPA1	YER049W	NCL1	P38205	684 aa	Known RBP	4.56	□□□□□ -1.68
TPA1	YER049W	REI1	P38344	393 aa	Predicted RBP	4.56	□□□□□ -1.68
TPA1	YER049W	MSC7	P38694	644 aa		4.56	□□□□□ -1.68
TPA1	YER049W	AKR1	P39010	764 aa		4.56	□□□□□ -1.68
TPA1	YER049W	NDC80	P40460	691 aa		4.56	□□□□□ -1.68
TPA1	YER049W	NUT1	P53114	1132 aa		4.56	□□□□□ -1.68
TPA1	YER049W	SCW11	P53189	542 aa		4.56	□□□□□ -1.68
TPA1	YER049W	RRB1	Q04225	511 aa	Known RBP	4.56	□□□□□ -1.68
TPA1	YER049W	YLR346C	Q06139	101 aa		4.56	□□□□□ -1.68
TPA1	YER049W	GET3	Q12154	354 aa	Known RBP	4.56	□□□□□ -1.68
TPA1	YER049W	GRX1	P25373	110 aa	Known RBP	4.56	□□□□□ -1.68
TPA1	YER049W	EFM2	P38347	419 aa		4.56	□□□□□ -1.68
TPA1	YER049W	RIX1	P38883	763 aa	Predicted RBP	4.56	□□□□□ -1.68
TPA1	YER049W	SEC9	P40357	651 aa		4.56	□□□□□ -1.68
TPA1	YER049W	MAD1	P40957	749 aa		4.56	□□□□□ -1.68
TPA1	YER049W	PPT1	P53043	513 aa		4.56	□□□□□ -1.68
TPA1	YER049W	ULP1	Q02724	621 aa		4.56	□□□□□ -1.68
TPA1	YER049W	AFT2	Q08957	416 aa		4.56	□□□□□ -1.68
TPA1	YER049W	MCD1	Q12158	566 aa		4.56	□□□□□ -1.68
TPA1	YER049W	SPO11	P23179	398 aa		4.55	□□□□□ -1.68
TPA1	YER049W	MCX1	P38323	520 aa	Predicted RBP	4.55	□□□□□ -1.68
TPA1	YER049W	RIM11	P38615	370 aa		4.55	□□□□□ -1.68
TPA1	YER049W	BCD1	P38772	366 aa		4.55	□□□□□ -1.68
TPA1	YER049W	VAC8	P39968	578 aa		4.55	□□□□□ -1.68
TPA1	YER049W	PIC2	P40035	300 aa		4.55	□□□□□ -1.68
TPA1	YER049W	ENP2	P48234	707 aa	Known RBP	4.55	□□□□□ -1.68
TPA1	YER049W	VTC3	Q02725	835 aa		4.55	□□□□□ -1.68
TPA1	YER049W	HMI1	Q12039	706 aa		4.55	□□□□□ -1.68
TPA1	YER049W	ATG9	Q12142	997 aa		4.55	□□□□□ -1.68
TPA1	YER049W	CCP1	P00431	361 aa		4.54	□□□□□ -1.68
TPA1	YER049W	COQ1	P18900	473 aa		4.54	□□□□□ -1.68
TPA1	YER049W	HCA4	P20448	770 aa	Known RBP	4.54	□□□□□ -1.68
TPA1	YER049W	VPS1	P21576	704 aa	Known RBP	4.54	□□□□□ -1.68
TPA1	YER049W	MSH3	P25336	1018 aa		4.54	□□□□□ -1.68
TPA1	YER049W	RRP43	P25359	394 aa	Predicted RBP	4.54	□□□□□ -1.68
TPA1	YER049W	YET1	P35723	206 aa		4.54	□□□□□ -1.68
TPA1	YER049W	VPS8	P39702	1274 aa		4.54	□□□□□ -1.68
TPA1	YER049W	EFM4	P40516	257 aa		4.54	□□□□□ -1.68
TPA1	YER049W	HUL4	P40985	892 aa		4.54	□□□□□ -1.68
TPA1	YER049W	IOC3	P43596	787 aa		4.54	□□□□□ -1.68
TPA1	YER049W	ROG3	P43602	733 aa		4.54	□□□□□ -1.68
TPA1	YER049W	IRC8	P47046	822 aa		4.54	□□□□□ -1.68
TPA1	YER049W	ERG5	P54781	538 aa		4.54	□□□□□ -1.68
TPA1	YER049W	MMR1	Q06324	491 aa		4.54	□□□□□ -1.68
TPA1	YER049W	ATG23	Q06671	453 aa		4.54	□□□□□ -1.68
TPA1	YER049W	VAC14	Q06708	880 aa		4.54	□□□□□ -1.68
TPA1	YER049W	RRI2	Q12348	645 aa		4.54	□□□□□ -1.68
TPA1	YER049W	CMR1	Q12510	522 aa	Known RBP	4.54	□□□□□ -1.68
TPA1	YER049W	PTC5	Q12511	572 aa		4.54	□□□□□ -1.68
TPA1	YER049W	FUS1	P11710	512 aa		4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms